Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Forward (+)

17173541 .. 17179182

Gene Structure 5642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1109300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCGTCGCAGGAGTACATGGACAAGATGCAGGTCCGACAGAACTACCGGAATCTCTGGCACTCCGACCTCATGGGCACCATTCAGGCCGACACTCGCTATTGCTGCTTTGCTGCGTTCTGTGCACCATGTGCTTCATACTTGCTCCGGAAACGAGCACTTTATAATGACATGTCAAGATATGTATGCTGTGCTGGTTATATGCCCTGTAGCGGTAGGTGTGGGGAAAGTAAATGTCCTGAATTCTGCCTGGCAACTGAGGTTTTCCTGTGTTTTGGGAATTCAGTGGCCTCAACCCGCTTTCTGTTGCAAGATGAATTCAATATACAGACAACGCAGTGTGATAATTGCATCATTGGTTTCATGTTCTGCCTACAACAACTTGCGTGTATTTTCTCCATAGTTGCAATGATTGTTGGAAGTGAAGAAATCTCAGAGGCATCTCAGTTGTTGAATTGTTTGGCTGACTTGGTGTACTGCACGGTCTGTGCATGTATGCAGACACAGCACAAGATTGAAATGGACAAACGAGATGGCAAGTTTGGACCGCAACCTATGGCAGTTCCTCAGTTTCAGCAGATGTCTCGCATTGATCAGCAAGTTCCTCCCACAGTTGGATATCCACCTCAACCAGCATATCCTGCTCAACCAGCTTACGGTCAGCCCTATGGTTATCCACCTGCTCCACAAGCTCAAGGCTACCCACCAGCCGGTTATCCTCCAAGCGGCTATCCACCCAGCGGTTATCCACCTTCCGGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.29

Weight (kDa)

5.59

Isoelectric Point (pI)

69.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AarI	CACCTGC	1 cut(s)	688
Acc36I	ACCTGC	2 cut(s)	22, 688
AccB1I	GGYRCC	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	147
AciI	CCGC	5 cut(s)	213, 298, 548, 726, 741
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	3 cut(s)	242, 280, 317
AdeI	CACNNNGTG	1 cut(s)	131
AfaI	GTAC	2 cut(s)	17, 476
AfiI	CCNNNNNNNGG	7 cut(s)	212, 614, 656, 710, 725, 740, 755
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	322, 454, 518
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	653, 692
AluI	AGCT	2 cut(s)	653, 692
Alw21I	GWGCWC	2 cut(s)	127, 160
Alw26I	GTCTC	1 cut(s)	588
Alw44I	GTGCAC	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	147
AoxI	GGCC	3 cut(s)	87, 288, 757
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	105, 113
ApoI	RAATTY	3 cut(s)	242, 280, 317
AspS9I	GGNCC	2 cut(s)	34, 545
AvaII	GGWCC	2 cut(s)	34, 545
BaeGI	GKGCMC	2 cut(s)	80, 127
BanI	GGYRCC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	127, 160
BbvI	GCAGC	2 cut(s)	92, 100
BccI	CCATC	1 cut(s)	527
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	208
BfuAI	ACCTGC	2 cut(s)	22, 688
BisI	GCNGC	3 cut(s)	106, 114, 727
BlsI	GCNGC	3 cut(s)	107, 115, 728
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	2 cut(s)	34, 545
BmgT120I	GGNCC	2 cut(s)	34, 545
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	3 cut(s)	18, 360, 449
BpuEI	CTTGAG	1 cut(s)	678
BsaWI	WCCGGW	2 cut(s)	48, 147
Bsc4I	CCNNNNNNNGG	7 cut(s)	212, 614, 656, 710, 725, 740, 755
Bse118I	RCCGGY	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	7 cut(s)	212, 614, 656, 710, 725, 740, 755
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	4 cut(s)	249, 447, 458, 581
BseSI	GKGCMC	2 cut(s)	80, 127
BseXI	GCAGC	2 cut(s)	92, 100
BseYI	CCCAGC	1 cut(s)	737
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	89, 290, 759
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	127, 160
BsiSI	CCGG	4 cut(s)	49, 148, 711, 756
BslI	CCNNNNNNNGG	7 cut(s)	212, 614, 656, 710, 725, 740, 755
BsmAI	GTCTC	1 cut(s)	588
BsnI	GGCC	3 cut(s)	89, 290, 759
Bsp1286I	GDGCHC	3 cut(s)	80, 127, 160
Bsp13I	TCCGGA	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	5 cut(s)	213, 298, 548, 726, 741
BspANI	GGCC	3 cut(s)	89, 290, 759
BspCNI	CTCAG	4 cut(s)	250, 446, 457, 580
BspEI	TCCGGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	79
BspMI	ACCTGC	2 cut(s)	22, 688
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	710
BssAI	RCCGGY	1 cut(s)	710
BssMI	GATC	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	484, 613, 659
BstAPI	GCANNNNNTGC	2 cut(s)	131, 641
BstDEI	CTNAG	4 cut(s)	258, 433, 444, 567
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	7 cut(s)	105, 122, 131, 505, 641, 650, 689
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	2 cut(s)	175, 495
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	208
BstSLI	GKGCMC	2 cut(s)	80, 127
BstV1I	GCAGC	2 cut(s)	92, 100
BsuRI	GGCC	3 cut(s)	89, 290, 759
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	291, 344
BveI	ACCTGC	2 cut(s)	22, 688
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	2 cut(s)	34, 545
Csp6I	GTAC	2 cut(s)	16, 475
CviAII	CATG	6 cut(s)	19, 73, 129, 172, 364, 492
CviQI	GTAC	2 cut(s)	16, 475
DdeI	CTNAG	4 cut(s)	258, 433, 444, 567
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
DraIII	CACNNNGTG	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	757
Eco32I	GATATC	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	34, 545
EcoRI	GAATTC	3 cut(s)	242, 280, 317
EcoRII	CCWGG	1 cut(s)	249
EcoRV	GATATC	1 cut(s)	620
FaeI	CATG	6 cut(s)	22, 76, 132, 175, 367, 495
FatI	CATG	6 cut(s)	18, 72, 128, 171, 363, 491
FauI	CCCGC	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	3 cut(s)	106, 114, 727
Fsp4HI	GCNGC	3 cut(s)	106, 114, 727
GluI	GCNGC	3 cut(s)	106, 114, 727
GsaI	CCCAGC	1 cut(s)	741
HaeIII	GGCC	3 cut(s)	89, 290, 759
HapII	CCGG	4 cut(s)	49, 148, 711, 756
Hin1II	CATG	6 cut(s)	22, 76, 132, 175, 367, 495
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	4 cut(s)	49, 148, 711, 756
Hpy166II	GTNNAC	2 cut(s)	125, 475
Hpy188I	TCNGA	3 cut(s)	38, 67, 436
Hpy188III	TCNNGA	3 cut(s)	148, 177, 239
Hpy8I	GTNNAC	2 cut(s)	125, 475
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	762
HpyCH4III	ACNGT	3 cut(s)	484, 613, 659
HpyCH4V	TGCA	8 cut(s)	31, 125, 310, 351, 407, 480, 491, 499
HpyF10VI	GCNNNNNNNGC	7 cut(s)	105, 122, 131, 505, 641, 650, 689
HpyF3I	CTNAG	4 cut(s)	258, 433, 444, 567
Hsp92II	CATG	6 cut(s)	22, 76, 132, 175, 367, 495
Kpn2I	TCCGGA	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	1 cut(s)	592
LmnI	GCTCC	2 cut(s)	150, 688
Lsp1109I	GCAGC	2 cut(s)	92, 100
LweI	GCATC	3 cut(s)	18, 360, 449
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	1 cut(s)	437
MhlI	GDGCHC	3 cut(s)	80, 127, 160
MluCI	AATT	5 cut(s)	242, 280, 317, 346, 454
MmeI	TCCRAC	4 cut(s)	61, 90, 397, 595
MnlI	CCTC	8 cut(s)	80, 253, 301, 430, 576, 615, 636, 729
MroI	TCCGGA	1 cut(s)	147
MseI	TTAA	1 cut(s)	763
MspA1I	CMGCKG	1 cut(s)	741
MspI	CCGG	4 cut(s)	49, 148, 711, 756
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	7 cut(s)	105, 122, 131, 505, 641, 650, 689
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	6 cut(s)	22, 76, 132, 175, 367, 495
NlaIV	GGNNCC	1 cut(s)	79
NspI	RCATGY	2 cut(s)	175, 495
PaqCI	CACCTGC	1 cut(s)	688
PciI	ACATGT	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	107, 115, 728
PscI	ACATGT	1 cut(s)	171
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	34, 545
RsaI	GTAC	2 cut(s)	17, 476
RsaNI	GTAC	2 cut(s)	16, 475
SaqAI	TTAA	1 cut(s)	763
SatI	GCNGC	3 cut(s)	106, 114, 727
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	2 cut(s)	34, 545
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	3 cut(s)	80, 127, 160
SfaNI	GCATC	3 cut(s)	18, 360, 449
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	2 cut(s)	34, 545
SmlI	CTYRAG	1 cut(s)	693
SmoI	CTYRAG	1 cut(s)	693
Sse9I	AATT	5 cut(s)	242, 280, 317, 346, 454
SsiI	CCGC	5 cut(s)	213, 298, 548, 726, 741
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	484, 613, 659
TasI	AATT	5 cut(s)	242, 280, 317, 346, 454
TatI	WGTACW	2 cut(s)	15, 474
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TscAI	CASTG	2 cut(s)	291, 344
TseI	GCWGC	2 cut(s)	105, 113
TspDTI	ATGAA	3 cut(s)	126, 330, 352
TspRI	CASTG	2 cut(s)	291, 344
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	34, 545
XapI	RAATTY	3 cut(s)	242, 280, 317
XceI	RCATGY	2 cut(s)	175, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.