AT5G41390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001223
Physical Location & Seq
Forward (+)
16565303 .. 16567483
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41390.1

Sequence Viewer

Length: 795 bp
ATGGCGCGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAGTTACCGGAATTTATGGCACTCCGATCTCATGGGCACCGTCTCGGCGGATACTCCATATTGTTTCTTCTCGTGTTTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAGAGAGCACTTTATAATGACATGTCAAGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAGTGTGGAGAAAGCAAATGCCCTCAATTTTGTCTTGCCACCGAGGTGTGTCTCTGTTTCGGGAACTCTGTGGCATCTACTCGTTTTATGTTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCATAATTGGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCATTGTTGGAAGTGATGAACTCTCTGAAGCGTCTCAGCTTCTTTCTTGCTTGGCGGATATGGTCTATTGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGACAAAAGAGATGGTTTGATTAGTCCTCAACCAATGTCAGTGCCACCAGCTCAGCAAATGTCTCGCATTGATCAACCGGTCCCTCCCTATGCCGGTTACCCTCCAGCCACTGGTTATCCCCAGCATTACTATCCACAGCCTGGCCATGGTTACCCTCCTGCTCCAGGCTATCCACCTCCCGGTCACGGTTACCCTCCTGCACCGGGCTATCCGCCAGCTCCGGGCTATCCATCGGGATATCCACCAGCACCAGGATATCCTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.01

Weight (kDa)

6.92

Isoelectric Point (pI)

77.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 2 cut(s) 635, 665
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 92, 467, 737
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 2 cut(s) 55, 320
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 174
AgeI ACCGGT 1 cut(s) 601
AgsI TTSAA 2 cut(s) 325, 789
AjnI CCWGG 3 cut(s) 664, 688, 775
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 4 cut(s) 22, 451, 575, 743
AluI AGCT 4 cut(s) 22, 451, 575, 743
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 4 cut(s) 91, 275, 450, 591
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 1 cut(s) 667
ApoI RAATTY 2 cut(s) 55, 320
AsiGI ACCGGT 1 cut(s) 601
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 128, 604
AsuC2I CCSGG 3 cut(s) 705, 729, 747
AvaII GGWCC 2 cut(s) 128, 604
BaeGI GKGCMC 1 cut(s) 83
BaeI ACNNNNGTAYC 2 cut(s) 175, 208
BalI TGGCCA 1 cut(s) 669
BanI GGYRCC 1 cut(s) 80
BauI CACGAG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 3 cut(s) 517, 530, 763
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 3 cut(s) 666, 690, 777
BciVI GTATCC 1 cut(s) 88
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 3 cut(s) 705, 729, 747
BcoDI GTCTC 4 cut(s) 91, 275, 450, 591
BfuI GTATCC 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 576
Bme1390I CCNGG 6 cut(s) 666, 690, 705, 729, 747, 777
Bme18I GGWCC 2 cut(s) 128, 604
BmgT120I GGNCC 2 cut(s) 128, 604
BmiI GGNNCC 2 cut(s) 82, 606
BmrFI CCNGG 6 cut(s) 666, 690, 705, 729, 747, 777
BmsI GCATC 2 cut(s) 21, 302
BpmI CTGGAG 2 cut(s) 612, 672
Bpu1102I GCTNAGC 1 cut(s) 576
BpuMI CCSGG 3 cut(s) 705, 729, 747
BsaJI CCNNGG 2 cut(s) 261, 670
BsaWI WCCGGW 2 cut(s) 51, 601
Bse118I RCCGGY 2 cut(s) 601, 617
Bse1I ACTGG 1 cut(s) 640
BseBI CCWGG 3 cut(s) 666, 690, 777
BseDI CCNNGG 2 cut(s) 261, 670
BseGI GGATG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 461, 590
BseNI ACTGG 1 cut(s) 640
BseSI GKGCMC 1 cut(s) 83
BseYI CCCAGC 1 cut(s) 645
BsgI GTGCAG 1 cut(s) 708
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 669
BshNI GGYRCC 1 cut(s) 80
BshTI ACCGGT 1 cut(s) 601
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 7 cut(s) 40, 52, 602, 618, 705, 728, 746
BslFI GGGAC 1 cut(s) 590
BsmAI GTCTC 4 cut(s) 91, 275, 450, 591
BsmBI CGTCTC 2 cut(s) 91, 450
BsmFI GGGAC 1 cut(s) 590
BsnI GGCC 1 cut(s) 669
Bsp1286I GDGCHC 2 cut(s) 83, 163
Bsp143I GATC 2 cut(s) 70, 595
Bsp1720I GCTNAGC 1 cut(s) 576
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 3 cut(s) 92, 467, 737
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 2 cut(s) 460, 589
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 82, 606
BspT107I GGYRCC 1 cut(s) 80
BsrFI RCCGGY 2 cut(s) 601, 617
BsrI ACTGG 1 cut(s) 640
BssAI RCCGGY 2 cut(s) 601, 617
BssECI CCNNGG 2 cut(s) 261, 670
BssMI GATC 2 cut(s) 70, 595
BssSI CACGAG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 670
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 3 cut(s) 666, 690, 777
Bst4CI ACNGT 3 cut(s) 85, 487, 713
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 391, 412, 741
BstDEI CTNAG 2 cut(s) 447, 576
BstDSI CCRYGG 1 cut(s) 670
BstEII GGTNACC 3 cut(s) 620, 674, 713
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 73, 598
BstMAI GTCTC 4 cut(s) 91, 275, 450, 591
BstMBI GATC 2 cut(s) 70, 595
BstMWI GCNNNNNNNGC 3 cut(s) 19, 40, 351
BstNI CCWGG 3 cut(s) 666, 690, 777
BstNSI RCATGY 2 cut(s) 178, 208
BstPI GGTNACC 3 cut(s) 620, 674, 713
BstSCI CCNGG 6 cut(s) 664, 688, 703, 727, 745, 775
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 1 cut(s) 7
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 669
BtgI CCRYGG 1 cut(s) 670
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 570, 633
Cac8I GCNNGC 3 cut(s) 391, 412, 741
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 601, 617
Cfr13I GGNCC 2 cut(s) 128, 604
CseI GACGC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 184
CspAI ACCGGT 1 cut(s) 601
CviAII CATG 4 cut(s) 76, 175, 205, 671
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 447, 576
DpnI GATC 2 cut(s) 72, 597
DpnII GATC 2 cut(s) 70, 595
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 3 cut(s) 107, 482, 726
Eco130I CCWWGG 1 cut(s) 670
Eco32I GATATC 2 cut(s) 764, 782
Eco47I GGWCC 2 cut(s) 128, 604
Eco57I CTGAAG 1 cut(s) 459
Eco91I GGTNACC 3 cut(s) 620, 674, 713
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoO65I GGTNACC 3 cut(s) 620, 674, 713
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 3 cut(s) 664, 688, 775
EcoRV GATATC 2 cut(s) 764, 782
EcoT14I CCWWGG 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 670
Esp3I CGTCTC 2 cut(s) 91, 450
FaeI CATG 4 cut(s) 79, 178, 208, 674
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 1 cut(s) 590
FatI CATG 4 cut(s) 75, 174, 204, 670
FbaI TGATCA 1 cut(s) 595
FokI GGATG 1 cut(s) 314
GlaI GCGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 649
GsuI CTGGAG 2 cut(s) 612, 672
HaeIII GGCC 1 cut(s) 669
HapII CCGG 7 cut(s) 40, 52, 602, 618, 705, 728, 746
HgaI GACGC 1 cut(s) 432
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 79, 178, 208, 674
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 20
HpaII CCGG 7 cut(s) 40, 52, 602, 618, 705, 728, 746
Hpy166II GTNNAC 2 cut(s) 128, 186
Hpy188I TCNGA 3 cut(s) 70, 153, 439
Hpy188III TCNNGA 2 cut(s) 280, 759
Hpy8I GTNNAC 2 cut(s) 128, 186
HpyAV CCTTC 1 cut(s) 795
HpyCH4III ACNGT 3 cut(s) 85, 487, 713
HpyCH4V TGCA 8 cut(s) 34, 313, 354, 393, 414, 483, 502, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 40, 351
HpyF3I CTNAG 2 cut(s) 447, 576
Hsp92II CATG 4 cut(s) 79, 178, 208, 674
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 2 cut(s) 70, 595
LmnI GCTCC 2 cut(s) 691, 748
LweI GCATC 2 cut(s) 21, 302
MaeIII GTNAC 6 cut(s) 47, 200, 620, 674, 707, 713
MalI GATC 2 cut(s) 72, 597
MboI GATC 2 cut(s) 70, 595
MboII GAAGA 2 cut(s) 103, 166
MfeI CAATTG 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 83, 163
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 5 cut(s) 55, 245, 320, 349, 357
MluNI TGGCCA 1 cut(s) 669
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 9 cut(s) 252, 256, 386, 561, 618, 636, 690, 711, 729
Mox20I TGGCCA 1 cut(s) 669
MscI TGGCCA 1 cut(s) 669
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 669
MspI CCGG 7 cut(s) 40, 52, 602, 618, 705, 728, 746
MspR9I CCNGG 6 cut(s) 666, 690, 705, 729, 747, 777
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 3 cut(s) 666, 690, 777
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 19, 40, 351
NciI CCSGG 3 cut(s) 705, 729, 747
NcoI CCATGG 1 cut(s) 670
NdeII GATC 2 cut(s) 70, 595
NlaIII CATG 4 cut(s) 79, 178, 208, 674
NlaIV GGNNCC 2 cut(s) 82, 606
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 707
NspI RCATGY 2 cut(s) 178, 208
OliI CACNNNNGTG 1 cut(s) 263
PciI ACATGT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PflMI CCANNNNNTGG 2 cut(s) 635, 665
PinAI ACCGGT 1 cut(s) 601
PscI ACATGT 1 cut(s) 174
PsiI TTATAA 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 664, 688, 775
PspEI GGTNACC 3 cut(s) 620, 674, 713
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 3 cut(s) 664, 688, 775
PspN4I GGNNCC 2 cut(s) 82, 606
PspPI GGNCC 2 cut(s) 128, 604
PstNI CAGNNNCTG 1 cut(s) 635
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 263
Sau3AI GATC 2 cut(s) 70, 595
Sau96I GGNCC 2 cut(s) 128, 604
ScrFI CCNGG 6 cut(s) 666, 690, 705, 729, 747, 777
SduI GDGCHC 2 cut(s) 83, 163
SetI ASST 8 cut(s) 24, 133, 185, 267, 453, 577, 703, 745
SfaNI GCATC 2 cut(s) 21, 302
SinI GGWCC 2 cut(s) 128, 604
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 5 cut(s) 55, 245, 320, 349, 357
SsiI CCGC 3 cut(s) 92, 467, 737
StyD4I CCNGG 6 cut(s) 664, 688, 703, 727, 745, 775
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 3 cut(s) 85, 487, 713
TasI AATT 5 cut(s) 55, 245, 320, 349, 357
TscAI CASTG 2 cut(s) 570, 640
TseFI GTSAC 1 cut(s) 707
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 3 cut(s) 129, 333, 444
TspRI CASTG 2 cut(s) 570, 640
Van91I CCANNNNNTGG 2 cut(s) 635, 665
VpaK11BI GGWCC 2 cut(s) 128, 604
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 2 cut(s) 55, 320
XceI RCATGY 2 cut(s) 178, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.