RLG00000003964

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001223
Physical Location & Seq
Forward (+)
54791279 .. 54794620
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003964

Sequence Viewer

Length: 759 bp
ATGGCGTCGTCTCAGGCCAACATGGAGAAGATGCAAGTCCGCCAGAATTACCGCAATCTTTGGCACTCTGACCTCATGGGAACCATTCAGGCCGATACTCGCTATTGCTGCTTCTCGTTTTTTTGTGCACCGTGTGCATCATACTTGCTCCGGAAAAGAGCTCTTTACAATGACATGTCAAGATATGTATGCTGTGCTGGTTATATGCCCTGCAGTGGTAGATGTGGGGAAAGTAAATGCCCTGAATTTTGCCTGGCCACTGAGGTGTTTTTGTGCTTTGGGAATTCCGTGGCTTCAACTCGCTTTCTGTTGCAAGATGAATTTAATATTCAGACCACGCAGTGTGATAATTGCATCATTGGTTTCATGGTCTGCCTACAACAAGTTGCATGTATTTTCTCCATAGTTGCAATGCTAGTTGGAAGTGAAGAAATCTCAGAGGCGTCTCAGTTATTGAACTGTTTGGCTGACGTGGTGTACTGCAGTGTGTGTGCATGTATGCAGACACAACACAAGATTGAAATGGACAAGCGTGATGGCATGTTTGGACCCCAACCAATGGCAGTACCTCAGTTTCAGCAGATGTCTCGCATTGATCAACAAATTCCTCCCAATGTCGGATATCCTCCTCAACCAGTATACGGGCAACCCTATGGGTATCCACCTCCTCCTCAGGCTCAAGGCTATCCACCTCCTCCTCAGGCTCAAGGCTATCCTCCAGCTGGATACCCTCCACCTGGTTATCCACCTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.12

Weight (kDa)

5.68

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 559
AccI GTMKAC 1 cut(s) 639
AccIII TCCGGA 1 cut(s) 150
AciI CCGC 2 cut(s) 40, 52
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 4 cut(s) 245, 283, 320, 603
AcyI GRCGYC 2 cut(s) 5, 443
AdeI CACNNNGTG 2 cut(s) 134, 342
AfaI GTAC 2 cut(s) 479, 567
AfiI CCNNNNNNNGG 6 cut(s) 215, 559, 617, 641, 722, 737
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 3 cut(s) 297, 457, 521
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 2 cut(s) 252, 736
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 2 cut(s) 161, 722
AluI AGCT 2 cut(s) 161, 722
Alw21I GWGCWC 2 cut(s) 130, 163
Alw26I GTCTC 3 cut(s) 15, 450, 591
Alw44I GTGCAC 1 cut(s) 126
Aor13HI TCCGGA 1 cut(s) 150
AoxI GGCC 3 cut(s) 15, 90, 255
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 4 cut(s) 245, 283, 320, 603
AspS9I GGNCC 1 cut(s) 548
AvaII GGWCC 1 cut(s) 548
AxyI CCTNAGG 2 cut(s) 672, 699
BaeGI GKGCMC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 130, 163
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 2 cut(s) 254, 738
BciVI GTATCC 2 cut(s) 669, 719
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 3 cut(s) 15, 450, 591
BfaI CTAG 2 cut(s) 416, 753
BfmI CTRYAG 2 cut(s) 211, 481
BfuI GTATCC 2 cut(s) 669, 719
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 254, 738
Bme18I GGWCC 1 cut(s) 548
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 2 cut(s) 82, 550
BmrFI CCNGG 2 cut(s) 254, 738
BmsI GCATC 3 cut(s) 21, 146, 363
BpmI CTGGAG 1 cut(s) 702
BpuEI CTTGAG 2 cut(s) 663, 690
BsaHI GRCGYC 2 cut(s) 5, 443
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 559, 617, 641, 722, 737
Bse1I ACTGG 1 cut(s) 635
Bse21I CCTNAGG 2 cut(s) 672, 699
Bse3DI GCAATG 1 cut(s) 417
BseAI TCCGGA 1 cut(s) 150
BseBI CCWGG 2 cut(s) 254, 738
BseDI CCNNGG 1 cut(s) 288
BseLI CCNNNNNNNGG 6 cut(s) 215, 559, 617, 641, 722, 737
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 7 cut(s) 26, 252, 450, 461, 584, 686, 713
BseNI ACTGG 1 cut(s) 635
BseRI GAGGAG 5 cut(s) 618, 657, 660, 684, 687
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 95
BshFI GGCC 3 cut(s) 17, 92, 257
BsiHKAI GWGCWC 2 cut(s) 130, 163
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 6 cut(s) 215, 559, 617, 641, 722, 737
BsmAI GTCTC 3 cut(s) 15, 450, 591
BsmBI CGTCTC 2 cut(s) 15, 450
BsnI GGCC 3 cut(s) 17, 92, 257
Bsp1286I GDGCHC 2 cut(s) 130, 163
Bsp13I TCCGGA 1 cut(s) 150
Bsp143I GATC 1 cut(s) 595
BspACI CCGC 2 cut(s) 40, 52
BspANI GGCC 3 cut(s) 17, 92, 257
BspCNI CTCAG 7 cut(s) 25, 253, 449, 460, 583, 685, 712
BspEI TCCGGA 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 82, 550
BspMAI CTGCAG 2 cut(s) 215, 485
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 595
BssNAI GTATAC 1 cut(s) 640
BssNI GRCGYC 2 cut(s) 5, 443
Bst1107I GTATAC 1 cut(s) 640
Bst2UI CCWGG 2 cut(s) 254, 738
Bst4CI ACNGT 2 cut(s) 132, 461
BstACI GRCGYC 2 cut(s) 5, 443
BstAPI GCANNNNNTGC 1 cut(s) 134
BstDEI CTNAG 7 cut(s) 12, 261, 436, 447, 570, 672, 699
BstDSI CCRYGG 1 cut(s) 288
BstKTI GATC 1 cut(s) 598
BstMAI GTCTC 3 cut(s) 15, 450, 591
BstMBI GATC 1 cut(s) 595
BstMWI GCNNNNNNNGC 2 cut(s) 108, 134
BstNI CCWGG 2 cut(s) 254, 738
BstNSI RCATGY 4 cut(s) 178, 393, 498, 544
BstSCI CCNGG 2 cut(s) 252, 736
BstSFI CTRYAG 2 cut(s) 211, 481
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 95
BstZ17I GTATAC 1 cut(s) 640
Bsu36I CCTNAGG 2 cut(s) 672, 699
BsuI GTATCC 2 cut(s) 669, 719
BsuRI GGCC 3 cut(s) 17, 92, 257
BtgI CCRYGG 1 cut(s) 288
BtrI CACGTC 1 cut(s) 472
BtsI GCAGTG 3 cut(s) 220, 347, 490
BtsIMutI CAGTG 4 cut(s) 220, 258, 347, 490
Cfr13I GGNCC 1 cut(s) 548
CseI GACGC 1 cut(s) 432
CsiI ACCWGGT 1 cut(s) 736
Csp6I GTAC 2 cut(s) 478, 566
CviAII CATG 7 cut(s) 22, 76, 175, 367, 390, 495, 541
CviQI GTAC 2 cut(s) 478, 566
DdeI CTNAG 7 cut(s) 12, 261, 436, 447, 570, 672, 699
DpnI GATC 1 cut(s) 597
DpnII GATC 1 cut(s) 595
DraIII CACNNNGTG 2 cut(s) 134, 342
EaeI YGGCCR 1 cut(s) 255
EciI GGCGGA 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 623
Eco47I GGWCC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 161
Eco81I CCTNAGG 2 cut(s) 672, 699
EcoICRI GAGCTC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 252, 736
EcoRV GATATC 1 cut(s) 623
EcoT38I GRGCYC 1 cut(s) 163
Esp3I CGTCTC 2 cut(s) 15, 450
FaeI CATG 7 cut(s) 25, 79, 178, 370, 393, 498, 544
FatI CATG 7 cut(s) 21, 75, 174, 366, 389, 494, 540
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 2 cut(s) 416, 753
GluI GCNGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 702
HaeIII GGCC 3 cut(s) 17, 92, 257
HapII CCGG 1 cut(s) 151
HgaI GACGC 1 cut(s) 432
Hin1I GRCGYC 2 cut(s) 5, 443
Hin1II CATG 7 cut(s) 25, 79, 178, 370, 393, 498, 544
HpaII CCGG 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 128, 478, 640
Hpy188I TCNGA 4 cut(s) 70, 333, 439, 620
Hpy188III TCNNGA 2 cut(s) 151, 180
Hpy8I GTNNAC 3 cut(s) 128, 478, 640
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 759
HpyCH4III ACNGT 2 cut(s) 132, 461
HpyCH4IV ACGT 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 134
HpyF3I CTNAG 7 cut(s) 12, 261, 436, 447, 570, 672, 699
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 2 cut(s) 5, 443
Hsp92II CATG 7 cut(s) 25, 79, 178, 370, 393, 498, 544
Kpn2I TCCGGA 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 1 cut(s) 595
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 3 cut(s) 21, 146, 363
MabI ACCWGGT 1 cut(s) 736
MaeI CTAG 2 cut(s) 416, 753
MaeII ACGT 1 cut(s) 471
MalI GATC 1 cut(s) 597
MboI GATC 1 cut(s) 595
MboII GAAGA 2 cut(s) 40, 440
MhlI GDGCHC 2 cut(s) 130, 163
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 6 cut(s) 46, 245, 283, 320, 349, 603
MluNI TGGCCA 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 400, 598
Mox20I TGGCCA 1 cut(s) 257
MroI TCCGGA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 257
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 254, 738
MvaI CCWGG 2 cut(s) 254, 738
MwoI GCNNNNNNNGC 2 cut(s) 108, 134
NdeII GATC 1 cut(s) 595
NlaIII CATG 7 cut(s) 25, 79, 178, 370, 393, 498, 544
NlaIV GGNNCC 2 cut(s) 82, 550
NspI RCATGY 4 cut(s) 178, 393, 498, 544
OliI CACNNNNGTG 1 cut(s) 263
PciI ACATGT 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 1 cut(s) 110
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 252, 736
PspGI CCWGG 2 cut(s) 252, 736
PspN4I GGNNCC 2 cut(s) 82, 550
PspPI GGNCC 1 cut(s) 548
PstI CTGCAG 2 cut(s) 215, 485
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 2 cut(s) 479, 567
RsaNI GTAC 2 cut(s) 478, 566
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 1 cut(s) 595
Sau96I GGNCC 1 cut(s) 548
ScrFI CCNGG 2 cut(s) 254, 738
SduI GDGCHC 2 cut(s) 130, 163
SexAI ACCWGGT 1 cut(s) 736
SfaNI GCATC 3 cut(s) 21, 146, 363
SfcI CTRYAG 2 cut(s) 211, 481
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 678, 705
SmoI CTYRAG 2 cut(s) 678, 705
Sse9I AATT 6 cut(s) 46, 245, 283, 320, 349, 603
SsiI CCGC 2 cut(s) 40, 52
SspI AATATT 1 cut(s) 328
SspMI CTAG 2 cut(s) 416, 753
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 252, 736
TaaI ACNGT 2 cut(s) 132, 461
TaiI ACGT 1 cut(s) 474
TasI AATT 6 cut(s) 46, 245, 283, 320, 349, 603
TatI WGTACW 1 cut(s) 477
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 4 cut(s) 220, 265, 347, 490
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 333, 355
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 4 cut(s) 220, 265, 347, 490
Van91I CCANNNNNTGG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 4 cut(s) 245, 283, 320, 603
XceI RCATGY 4 cut(s) 178, 393, 498, 544
XmiI GTMKAC 1 cut(s) 639
XspI CTAG 2 cut(s) 416, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.