Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Reverse (-)

19214689 .. 19217635

Gene Structure 2947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGGCTTGACGAAAATGTGGAGAAGATGCAGCAACGGCAGCACTACAAGAATCTATGGCACACCAATTTGATGGGCACCATCACTGCCGATACTGGCTATTGTTGCTTTGCTTGTTTCTGCGGTTATTGTGCTTCTTACATGTTACGGAAACGAGCCCTTTATGATGATATGACAAGTGGAAAATGTGGAGAAAGTAAATGCCCTGAATTTTGTCTTGTCACTGAGGTTTGTTGCTGCTTTGGAACGTCTGTTTCTTCAACTCGATATCTACTACAAGATGAATTCAACATACAGACGACTCCATGCGATAACTGCATCATTGGATTTATGATCATCCTAAAACAAGTTGCCTGTATATTCTCCATACTTGCTTGCATAACTGGAAGTGAAGAAATCAGGGATATTGCTGATGTATTGGGCTGCATTGCAGAAATAGTTTATTGCTCGGTCTGTGCTTGCATTCAGACCCAGCACAAAGTTGAAATGGACAAAAGAGACAACAAGTTAGATCCACAGCCAGCTATGGGAGTTCCTCTGACGCAGCACATGTCCCGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.02

Weight (kDa)

5.54

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	2 cut(s)	209, 284
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	2 cut(s)	141, 549
AgsI	TTSAA	3 cut(s)	261, 289, 485
AluBI	AGCT	1 cut(s)	524
AluI	AGCT	1 cut(s)	524
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	506
ApeKI	GCWGC	5 cut(s)	31, 40, 237, 423, 544
ApoI	RAATTY	2 cut(s)	209, 284
BaeGI	GKGCMC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	43, 52, 224, 410, 556
BccI	CCATC	2 cut(s)	67, 89
BceAI	ACGGC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	492
BisI	GCNGC	5 cut(s)	32, 41, 238, 424, 545
BlsI	GCNGC	5 cut(s)	33, 42, 239, 425, 546
BmiI	GGNNCC	1 cut(s)	79
BmsI	GCATC	2 cut(s)	18, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	100, 388
Bse3DI	GCAATG	1 cut(s)	426
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	100, 388
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	43, 52, 224, 410, 556
BseYI	CCCAGC	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	80, 160
Bsp143I	GATC	2 cut(s)	333, 511
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	100, 388
BssMI	GATC	2 cut(s)	333, 511
BstC8I	GCNNGC	3 cut(s)	376, 460, 522
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	2 cut(s)	336, 514
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	2 cut(s)	333, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 40, 105, 315
BstNSI	RCATGY	2 cut(s)	145, 553
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	5 cut(s)	43, 52, 224, 410, 556
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 222
Cac8I	GCNNGC	3 cut(s)	376, 460, 522
CseI	GACGC	1 cut(s)	550
CviAII	CATG	3 cut(s)	142, 306, 550
CviJI	RGCY	6 cut(s)	7, 99, 158, 423, 520, 524
CviKI_1	RGCY	6 cut(s)	7, 99, 158, 423, 520, 524
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	335, 513
DpnII	GATC	2 cut(s)	333, 511
Eco24I	GRGCYC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	3 cut(s)	145, 309, 553
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	3 cut(s)	141, 305, 549
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	5 cut(s)	32, 41, 238, 424, 545
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	5 cut(s)	32, 41, 238, 424, 545
GluI	GCNGC	5 cut(s)	32, 41, 238, 424, 545
GsaI	CCCAGC	1 cut(s)	475
HgaI	GACGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	145, 309, 553
HinfI	GANTC	2 cut(s)	52, 301
Hpy188I	TCNGA	2 cut(s)	468, 540
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	6 cut(s)	31, 318, 378, 426, 431, 462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 40, 105, 315
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	145, 309, 553
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	333, 511
LpnPI	CCDG	7 cut(s)	81, 219, 367, 369, 385, 485, 534
Lsp1109I	GCAGC	5 cut(s)	43, 52, 224, 410, 556
LweI	GCATC	2 cut(s)	18, 327
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	144, 220
MalI	GATC	2 cut(s)	335, 513
MboI	GATC	2 cut(s)	333, 511
MboII	GAAGA	3 cut(s)	37, 249, 404
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	80, 160
MluCI	AATT	3 cut(s)	67, 209, 284
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	2 cut(s)	220, 546
Mva1269I	GAATGC	1 cut(s)	462
MwoI	GCNNNNNNNGC	4 cut(s)	37, 40, 105, 315
NdeII	GATC	2 cut(s)	333, 511
NlaIII	CATG	3 cut(s)	145, 309, 553
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	2 cut(s)	145, 553
PciI	ACATGT	2 cut(s)	141, 549
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	5 cut(s)	33, 42, 239, 425, 546
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PscI	ACATGT	2 cut(s)	141, 549
PspFI	CCCAGC	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	511
SatI	GCNGC	5 cut(s)	32, 41, 238, 424, 545
Sau3AI	GATC	2 cut(s)	333, 511
SchI	GAGTC	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	80, 160
SetI	ASST	3 cut(s)	231, 251, 526
SfaNI	GCATC	2 cut(s)	18, 327
Sse9I	AATT	3 cut(s)	67, 209, 284
SsiI	CCGC	1 cut(s)	123
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	265
TaqII	GACCGA	1 cut(s)	439
TasI	AATT	3 cut(s)	67, 209, 284
TfiI	GAWTC	1 cut(s)	52
TscAI	CASTG	2 cut(s)	91, 229
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	5 cut(s)	31, 40, 237, 423, 544
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	91, 229
XapI	RAATTY	2 cut(s)	209, 284
XceI	RCATGY	2 cut(s)	145, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.