Rorug01G0251600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001223
Physical Location & Seq
Reverse (-)
35980001 .. 35982791
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0251600.1

Sequence Viewer

Length: 600 bp
ATGGTGGTGAAGCGCGGGCTCTACCGGAACCGAGCCACCGGATCTCATTCCCTAATGCGCTTCCGCATTGCAGCTTTGTACGTTGAGCTGATCGATATAAAGGTTCTTGGAGGGGGAATAGAGCTAGAGGAAGAGTTTGGGAAAATGGGAGAGAGCCAGAAGAAGTTCCAGATGGGAACCATTGGGGCTTTGAGTTTTACAAAGTGGTGCTCAATTTTGTTCGCAAAAGTTGGAACTCTTCCCCTGCATATTTGCTTGCTCTTAGTAACAAATGTAGATGGCACTGTGAGTGTGGAGTACAACGTATCCTATGTGTACCATGCCATGTATGCCTACTTCGACAGGGATAATGTCGCACTCAAGGGTCTTGCCAATGAGGAGGAGAGGGAGCATGTTGAGAAATTGATGGAATTCCAGAATAAGCATGGTGGAAGGGTGAAATTGAAATCAATACTGATGCCTCTCTTAGAGTTCGATCGTGCTGAGAAAGGAGATGCTCTATATGCAATGGAGCTTGCATTGTCTCTGGAGAAACTGACAAATAGTGGCTCTAAACCACGGAGCGCGTTTGCAATAAGGTTAAAACGCTCACTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.47

Weight (kDa)

9.24

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 96 - 182 5e-09 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 15, 566
AciI CCGC 2 cut(s) 15, 64
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 410
AfaI GTAC 3 cut(s) 80, 299, 317
AgsI TTSAA 1 cut(s) 445
AleI CACNNNNGTG 1 cut(s) 595
AluBI AGCT 4 cut(s) 74, 88, 124, 514
AluI AGCT 4 cut(s) 74, 88, 124, 514
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 3 cut(s) 15, 60, 566
AsuHPI GGTGA 2 cut(s) 19, 448
BanII GRGCYC 1 cut(s) 21
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 83
BccI CCATC 3 cut(s) 166, 272, 400
BciVI GTATCC 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 1 cut(s) 125
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 29, 178
BmsI GCATC 2 cut(s) 447, 484
BpmI CTGGAG 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 557
BsaWI WCCGGW 2 cut(s) 24, 38
Bse3DI GCAATG 2 cut(s) 66, 513
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 557
BseMI GCAATG 2 cut(s) 66, 513
BseMII CTCAG 1 cut(s) 474
BseRI GAGGAG 2 cut(s) 392, 395
BseXI GCAGC 1 cut(s) 83
Bsh1236I CGCG 2 cut(s) 15, 566
Bsh1285I CGRYCG 1 cut(s) 478
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 2 cut(s) 25, 39
BsmAI GTCTC 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 21, 212
Bsp143I GATC 3 cut(s) 41, 90, 475
BspACI CCGC 2 cut(s) 15, 64
BspCNI CTCAG 1 cut(s) 475
BspDI ATCGAT 1 cut(s) 93
BspFNI CGCG 2 cut(s) 15, 566
BspLI GGNNCC 2 cut(s) 29, 178
BspPI GGATC 1 cut(s) 49
BsrDI GCAATG 2 cut(s) 66, 513
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 3 cut(s) 41, 90, 475
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 2 cut(s) 126, 243
BstC8I GCNNGC 3 cut(s) 17, 257, 516
BstDEI CTNAG 3 cut(s) 262, 466, 483
BstDSI CCRYGG 1 cut(s) 557
BstFNI CGCG 2 cut(s) 15, 566
BstHHI GCGC 3 cut(s) 15, 60, 566
BstKTI GATC 3 cut(s) 44, 93, 478
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 3 cut(s) 41, 90, 475
BstMCI CGRYCG 1 cut(s) 478
BstMWI GCNNNNNNNGC 2 cut(s) 329, 503
BstNSI RCATGY 1 cut(s) 395
BstUI CGCG 2 cut(s) 15, 566
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 93
BsuI GTATCC 1 cut(s) 316
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 3 cut(s) 17, 257, 516
CfoI GCGC 3 cut(s) 15, 60, 566
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 3 cut(s) 79, 298, 316
CviAII CATG 4 cut(s) 320, 325, 392, 425
CviJI RGCY 9 cut(s) 19, 35, 74, 88, 124, 156, 188, 514, 549
CviKI_1 RGCY 9 cut(s) 19, 35, 74, 88, 124, 156, 188, 514, 549
CviQI GTAC 3 cut(s) 79, 298, 316
DdeI CTNAG 3 cut(s) 262, 466, 483
DpnI GATC 3 cut(s) 43, 92, 477
DpnII GATC 3 cut(s) 41, 90, 475
Eam1104I CTCTTC 2 cut(s) 126, 243
EarI CTCTTC 2 cut(s) 126, 243
Eco24I GRGCYC 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 4 cut(s) 323, 328, 395, 428
FatI CATG 4 cut(s) 319, 324, 391, 424
FauI CCCGC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 125
GlaI GCGC 3 cut(s) 14, 59, 565
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 548
HapII CCGG 2 cut(s) 25, 39
HhaI GCGC 3 cut(s) 15, 60, 566
Hin1II CATG 4 cut(s) 323, 328, 395, 428
Hin6I GCGC 3 cut(s) 13, 58, 564
HinP1I GCGC 3 cut(s) 13, 58, 564
HpaII CCGG 2 cut(s) 25, 39
HphI GGTGA 2 cut(s) 19, 448
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 3 cut(s) 169, 415, 527
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 81, 303
HpyCH4V TGCA 5 cut(s) 71, 247, 506, 518, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 503
HpyF3I CTNAG 3 cut(s) 262, 466, 483
HpySE526I ACGT 2 cut(s) 81, 303
Hsp92II CATG 4 cut(s) 323, 328, 395, 428
HspAI GCGC 3 cut(s) 13, 58, 564
Kzo9I GATC 3 cut(s) 41, 90, 475
LmnI GCTCC 3 cut(s) 388, 511, 561
LpnPI CCDG 8 cut(s) 38, 52, 170, 182, 257, 328, 428, 512
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 2 cut(s) 447, 484
MaeI CTAG 1 cut(s) 125
MaeII ACGT 2 cut(s) 81, 303
MaeIII GTNAC 1 cut(s) 265
MalI GATC 3 cut(s) 43, 92, 477
MboI GATC 3 cut(s) 41, 90, 475
MboII GAAGA 3 cut(s) 143, 172, 230
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 2 cut(s) 21, 212
MluCI AATT 4 cut(s) 213, 401, 410, 440
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 6 cut(s) 104, 121, 370, 373, 378, 471
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 581
MslI CAYNNNNRTG 1 cut(s) 595
MspI CCGG 2 cut(s) 25, 39
MvnI CGCG 2 cut(s) 15, 566
MwoI GCNNNNNNNGC 2 cut(s) 329, 503
NdeII GATC 3 cut(s) 41, 90, 475
NlaIII CATG 4 cut(s) 323, 328, 395, 428
NlaIV GGNNCC 2 cut(s) 29, 178
NspI RCATGY 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 73
Ple19I CGATCG 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 29, 178
PsuI RGATCY 1 cut(s) 41
PvuI CGATCG 1 cut(s) 478
RsaI GTAC 3 cut(s) 80, 299, 317
RsaNI GTAC 3 cut(s) 79, 298, 316
RseI CAYNNNNRTG 1 cut(s) 595
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 41, 90, 475
SduI GDGCHC 2 cut(s) 21, 212
SetI ASST 8 cut(s) 76, 84, 90, 105, 126, 306, 516, 581
SfaNI GCATC 2 cut(s) 447, 484
SmiMI CAYNNNNRTG 1 cut(s) 595
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 4 cut(s) 213, 401, 410, 440
SsiI CCGC 2 cut(s) 15, 64
SspMI CTAG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 2 cut(s) 84, 306
TaqI TCGA 3 cut(s) 93, 339, 474
TasI AATT 4 cut(s) 213, 401, 410, 440
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 1 cut(s) 289
TseI GCWGC 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 1 cut(s) 289
XapI RAATTY 1 cut(s) 410
XceI RCATGY 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.