Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Reverse (-)

14949095 .. 14952311

Gene Structure 3217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGGGCGTCTCAGGCGAACATGGAGAAGATGCAGTTACGCCAGAGCTACCGCAATCTCTGGCTCTCTGACCTCATGAGAACCATTCAGGCCGATACTCGCTATTGCTGCTTCTCGTTTTTTTGTGCCCCGTGTGCATCATACTTGCTCCGGAAAAGAGCTCTTTACAATGACATGTCAAGATATGTATGCTGTGCTGGTTATATGCCCTGCAGTGGTAGATGTGGGGAAAGTAAATGCCCTGAATTTTGCCTGGCCACTGAGGTGTTTTTGTGCTTTGGGCAATCCGTGGCTTCAACTCGCTTTCTGTTGCAAGATGAATTTAATATTCAGACCACGCAGTGTGATAATTGCATCATTGCTTTCATGGTCTGCCTACGACATTTTGCATGTATTTTCTCTATAGTTGCAAGGCTCGTTGGAAGAAAGGAAATCTCAGAGGCGTCTCAGTTATTGAACTGTTTGTCTGACTTGGTGTACTGCAGTGTGTGTGCATGTATGCAGACACAACACAAGATCGAAATGGACAAGCGTGATGGCATGTTTGGACCCCAACCAATGGCAGTGCCTCAGTTTCAGCAGATGTCTCGCATTGATCTACAAATTCCTCCCAATGTCGGATATCCTCCTCAACCGGCATACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.53

Weight (kDa)

8.24

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccIII	TCCGGA	1 cut(s)	150
AciI	CCGC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	3 cut(s)	245, 320, 603
AcyI	GRCGYC	2 cut(s)	8, 443
AdeI	CACNNNGTG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	4 cut(s)	215, 559, 617, 641
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	297, 457
AjnI	CCWGG	1 cut(s)	252
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	2 cut(s)	48, 161
AluI	AGCT	2 cut(s)	48, 161
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	3 cut(s)	15, 450, 591
Aor13HI	TCCGGA	1 cut(s)	150
AoxI	GGCC	2 cut(s)	90, 255
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	3 cut(s)	245, 320, 603
AspS9I	GGNCC	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	530
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	3 cut(s)	15, 450, 591
BfmI	CTRYAG	3 cut(s)	211, 402, 481
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	3 cut(s)	21, 146, 363
BplI	GAGNNNNNCTC	1 cut(s)	27
BsaHI	GRCGYC	2 cut(s)	8, 443
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 559, 617, 641
Bse118I	RCCGGY	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	215, 559, 617, 641
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	5 cut(s)	26, 252, 450, 461, 584
BseRI	GAGGAG	1 cut(s)	618
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	95
BshFI	GGCC	2 cut(s)	92, 257
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	151, 635
BslI	CCNNNNNNNGG	4 cut(s)	215, 559, 617, 641
BsmAI	GTCTC	3 cut(s)	15, 450, 591
BsmBI	CGTCTC	2 cut(s)	15, 450
BsnI	GGCC	2 cut(s)	92, 257
Bsp1286I	GDGCHC	2 cut(s)	130, 163
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	516, 595
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	92, 257
BspCNI	CTCAG	5 cut(s)	25, 253, 449, 460, 583
BspEI	TCCGGA	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	550
BspMAI	CTGCAG	2 cut(s)	215, 485
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	516, 595
BssNI	GRCGYC	2 cut(s)	8, 443
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	461
BstACI	GRCGYC	2 cut(s)	8, 443
BstDEI	CTNAG	5 cut(s)	12, 261, 436, 447, 570
BstDSI	CCRYGG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	519, 598
BstMAI	GTCTC	3 cut(s)	15, 450, 591
BstMBI	GATC	2 cut(s)	516, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 108, 134
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	4 cut(s)	178, 393, 498, 544
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	3 cut(s)	211, 402, 481
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	92, 257
BtgI	CCRYGG	1 cut(s)	288
BtsI	GCAGTG	4 cut(s)	220, 347, 490, 570
BtsIMutI	CAGTG	5 cut(s)	220, 258, 347, 490, 570
CciI	TCATGA	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	548
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	7 cut(s)	22, 76, 175, 367, 390, 495, 541
CviJI	RGCY	7 cut(s)	48, 64, 92, 161, 257, 293, 415
CviKI_1	RGCY	7 cut(s)	48, 64, 92, 161, 257, 293, 415
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	5 cut(s)	12, 261, 436, 447, 570
DpnI	GATC	2 cut(s)	518, 597
DpnII	GATC	2 cut(s)	516, 595
DraIII	CACNNNGTG	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	163
Esp3I	CGTCTC	2 cut(s)	15, 450
FaeI	CATG	7 cut(s)	25, 79, 178, 370, 393, 498, 544
FatI	CATG	7 cut(s)	21, 75, 174, 366, 389, 494, 540
Fnu4HI	GCNGC	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	92, 257
HapII	CCGG	2 cut(s)	151, 635
HgaI	GACGC	1 cut(s)	432
Hin1I	GRCGYC	2 cut(s)	8, 443
Hin1II	CATG	7 cut(s)	25, 79, 178, 370, 393, 498, 544
HpaII	CCGG	2 cut(s)	151, 635
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	5 cut(s)	70, 333, 439, 469, 620
Hpy188III	TCNNGA	3 cut(s)	76, 151, 180
Hpy8I	GTNNAC	1 cut(s)	478
HpyCH4III	ACNGT	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 108, 134
HpyF3I	CTNAG	5 cut(s)	12, 261, 436, 447, 570
Hsp92I	GRCGYC	2 cut(s)	8, 443
Hsp92II	CATG	7 cut(s)	25, 79, 178, 370, 393, 498, 544
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	516, 595
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	9 cut(s)	46, 56, 74, 164, 183, 223, 239, 255, 266
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	3 cut(s)	21, 146, 363
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	2 cut(s)	518, 597
MboI	GATC	2 cut(s)	516, 595
MboII	GAAGA	2 cut(s)	40, 435
MhlI	GDGCHC	2 cut(s)	130, 163
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	4 cut(s)	245, 320, 349, 603
MluNI	TGGCCA	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	400, 598
MnlI	CCTC	7 cut(s)	83, 256, 433, 579, 618, 636, 639
Mox20I	TGGCCA	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	2 cut(s)	151, 635
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	14, 108, 134
NdeII	GATC	2 cut(s)	516, 595
NlaIII	CATG	7 cut(s)	25, 79, 178, 370, 393, 498, 544
NlaIV	GGNNCC	1 cut(s)	550
NspI	RCATGY	4 cut(s)	178, 393, 498, 544
OliI	CACNNNNGTG	1 cut(s)	263
PagI	TCATGA	1 cut(s)	75
PciI	ACATGT	1 cut(s)	174
PflMI	CCANNNNNTGG	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	110
PscI	ACATGT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	548
PstI	CTGCAG	2 cut(s)	215, 485
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	516, 595
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	2 cut(s)	130, 163
SetI	ASST	4 cut(s)	50, 75, 163, 267
SfaNI	GCATC	3 cut(s)	21, 146, 363
SfcI	CTRYAG	3 cut(s)	211, 402, 481
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	245, 320, 349, 603
SsiI	CCGC	1 cut(s)	52
SspI	AATATT	1 cut(s)	328
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	461
TaqI	TCGA	1 cut(s)	519
TasI	AATT	4 cut(s)	245, 320, 349, 603
TatI	WGTACW	1 cut(s)	477
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	5 cut(s)	220, 265, 347, 490, 570
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	333, 355
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	5 cut(s)	220, 265, 347, 490, 570
Van91I	CCANNNNNTGG	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	3 cut(s)	245, 320, 603
XceI	RCATGY	4 cut(s)	178, 393, 498, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.