Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Forward (+)

21530313 .. 21534942

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1088200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCGTCGCAGGAGTACATGGACAAGTTGCAGGCTCGCCAAAACTACCGAAATCTCTGGCACTCCGACCTCATGGGCACCATTCAGGCCGACACTCCCTATTGCTGCTTTGCGGCGTTCTGTGCGCCATGTGCATCATACTTGCTCCGGAAACGAGCACTTTATAATGACATGTCAAGATATGTTTGCTGTGCTGGTTATATGCCCTGTAGCGGAAGGTGTGGGGAAAGTAAATGTCCTGAATTCTGCCTGGCAACTGAGTTTCTAATTTTCATCCTATGCTCGACGTTCCAGGTTTTCCTGTGCTTTGGGAATTCAGTGGCCTCAACCCGCCATCTGTTGCAAGATGAATTCAATATACAGACAACGCAGTGTGATAATTGCATCATTGGTTTCATGCTCTTCCTAAAACAAATTGCGTGCATCTTTTCCATAGTTGCGATGATTGTTGGAAATCAAGAAATCTCACGAGCATCTCATTTGTTGAGTTGTCTGTCTGACATGGTGTACTGCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.51

Weight (kDa)

6.25

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	147
AciI	CCGC	3 cut(s)	113, 213, 331
AcsI	RAATTY	3 cut(s)	242, 313, 350
AfaI	GTAC	2 cut(s)	17, 509
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	249, 291
Alw21I	GWGCWC	1 cut(s)	160
Aor13HI	TCCGGA	1 cut(s)	147
AoxI	GGCC	2 cut(s)	87, 321
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	3 cut(s)	242, 313, 350
AspLEI	GCGC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	342
BciT130I	CCWGG	2 cut(s)	251, 293
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	2 cut(s)	106, 114
BlsI	GCNGC	2 cut(s)	107, 115
Bme1390I	CCNGG	2 cut(s)	251, 293
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	251, 293
BmsI	GCATC	4 cut(s)	143, 393, 432, 482
BsaAI	YACGTR	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseAI	TCCGGA	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	251, 293
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	89, 323
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	212
BsnI	GGCC	2 cut(s)	89, 323
Bsp1286I	GDGCHC	2 cut(s)	80, 160
Bsp13I	TCCGGA	1 cut(s)	147
BspACI	CCGC	3 cut(s)	113, 213, 331
BspANI	GGCC	2 cut(s)	89, 323
BspCNI	CTCAG	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	251, 293
Bst6I	CTCTTC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	516
BstC8I	GCNNGC	3 cut(s)	33, 37, 421
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 131
BstNI	CCWGG	2 cut(s)	251, 293
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	249, 291
BstSFI	CTRYAG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	89, 323
BtgZI	GCGATG	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	273
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	324, 377
Cac8I	GCNNGC	3 cut(s)	33, 37, 421
CfoI	GCGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	16, 508
CviAII	CATG	6 cut(s)	19, 73, 129, 172, 397, 502
CviJI	RGCY	3 cut(s)	35, 89, 323
CviKI_1	RGCY	3 cut(s)	35, 89, 323
CviQI	GTAC	2 cut(s)	16, 508
DdeI	CTNAG	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EcoRI	GAATTC	3 cut(s)	242, 313, 350
EcoRII	CCWGG	2 cut(s)	249, 291
FaeI	CATG	6 cut(s)	22, 76, 132, 175, 400, 505
FatI	CATG	6 cut(s)	18, 72, 128, 171, 396, 501
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	2 cut(s)	106, 114
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	106, 114
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	106, 114
HaeIII	GGCC	2 cut(s)	89, 323
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	6 cut(s)	22, 76, 132, 175, 400, 505
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HpaII	CCGG	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	2 cut(s)	67, 499
Hpy188III	TCNNGA	5 cut(s)	148, 177, 239, 458, 468
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	2 cut(s)	10, 289
HpyAV	CCTTC	1 cut(s)	210
HpyCH4IV	ACGT	2 cut(s)	287, 515
HpyCH4V	TGCA	6 cut(s)	31, 134, 343, 384, 423, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 131
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	287, 515
Hsp92II	CATG	6 cut(s)	22, 76, 132, 175, 400, 505
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	4 cut(s)	143, 393, 432, 482
MaeII	ACGT	2 cut(s)	287, 515
MboII	GAAGA	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	80, 160
MluCI	AATT	6 cut(s)	242, 267, 313, 350, 379, 414
MmeI	TCCRAC	2 cut(s)	90, 430
MnlI	CCTC	2 cut(s)	80, 334
MroI	TCCGGA	1 cut(s)	147
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	251, 293
MvaI	CCWGG	2 cut(s)	251, 293
MwoI	GCNNNNNNNGC	2 cut(s)	122, 131
NlaIII	CATG	6 cut(s)	22, 76, 132, 175, 400, 505
NlaIV	GGNNCC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	175
PciI	ACATGT	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	107, 115
Ppu21I	YACGTR	1 cut(s)	516
PscI	ACATGT	1 cut(s)	171
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	249, 291
PspGI	CCWGG	2 cut(s)	249, 291
PspN4I	GGNNCC	1 cut(s)	79
RsaI	GTAC	2 cut(s)	17, 509
RsaNI	GTAC	2 cut(s)	16, 508
SapI	GCTCTTC	1 cut(s)	407
SatI	GCNGC	2 cut(s)	106, 114
ScrFI	CCNGG	2 cut(s)	251, 293
SduI	GDGCHC	2 cut(s)	80, 160
SetI	ASST	5 cut(s)	72, 221, 290, 297, 518
SfaNI	GCATC	4 cut(s)	143, 393, 432, 482
SfcI	CTRYAG	1 cut(s)	208
Sse9I	AATT	6 cut(s)	242, 267, 313, 350, 379, 414
SsiI	CCGC	3 cut(s)	113, 213, 331
StyD4I	CCNGG	2 cut(s)	249, 291
TaiI	ACGT	2 cut(s)	290, 518
TaqI	TCGA	1 cut(s)	284
TasI	AATT	6 cut(s)	242, 267, 313, 350, 379, 414
TatI	WGTACW	2 cut(s)	15, 507
TauI	GCSGC	1 cut(s)	116
TscAI	CASTG	2 cut(s)	324, 377
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	3 cut(s)	262, 363, 385
TspRI	CASTG	2 cut(s)	324, 377
XapI	RAATTY	3 cut(s)	242, 313, 350
XceI	RCATGY	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.