Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001083.1

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2715

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001083.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 631 bp

tgcaccgtgtgcatcgtacttactccggaaaagagctctttacaatgacatgtcaagatatgtatgctgtgctggttatatgccctgcagtggtagatgtggggaaagtaaatgccctgaattttgcctggccactgaggtgtttttgtgctttgggaattccgtggcttcaactcgctttctgttgcaagatgaatttaatattcagaccacgcagtgtgataattgcatcattggtttcatggtctgcctacaacaagttgcatgtattttctccatagttgcgatgctagttggaagcgaagaaatctcagaggcgtctcagttattgaactgtttggctgacgtggtgtactgcagtgtgtgtgcatgtatgcagacacaacacaagatcgaaatggacaagcgtgatggcatgtttggaccccaaccaatggcagtacctcagtttcagcagatgtctcgcattgatcaacaaattcctcccaatgtcggatatcctcctcaaccagtatacgggcaaccctatgggtatccacctcctcctcaggctcaaggctatccacctcagcaggctcaaggctatcctccagctggataccctccacctggttatccaccttctaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.06

Weight (kDa)

5.09

Isoelectric Point (pI)

70.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	514
AccIII	TCCGGA	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	4 cut(s)	120, 158, 195, 478
AcyI	GRCGYC	1 cut(s)	318
AdeI	CACNNNGTG	2 cut(s)	9, 217
AfaI	GTAC	3 cut(s)	18, 354, 442
AfiI	CCNNNNNNNGG	6 cut(s)	90, 434, 492, 516, 594, 609
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	172, 332
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	127, 608
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	36, 594
AluI	AGCT	2 cut(s)	36, 594
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	325, 466
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	4 cut(s)	120, 158, 195, 478
AspS9I	GGNCC	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	423
AxyI	CCTNAGG	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	568
BccI	CCATC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	2 cut(s)	129, 610
BciVI	GTATCC	2 cut(s)	544, 591
BclI	TGATCA	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	325, 466
BfaI	CTAG	2 cut(s)	291, 625
BfmI	CTRYAG	2 cut(s)	86, 356
BfuI	GTATCC	2 cut(s)	544, 591
Bme1390I	CCNGG	2 cut(s)	129, 610
Bme18I	GGWCC	1 cut(s)	423
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	129, 610
BmsI	GCATC	3 cut(s)	21, 238, 277
BpmI	CTGGAG	1 cut(s)	574
Bpu10I	CCTNAGC	1 cut(s)	568
BpuEI	CTTGAG	2 cut(s)	538, 562
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	6 cut(s)	90, 434, 492, 516, 594, 609
Bse1I	ACTGG	1 cut(s)	510
Bse21I	CCTNAGG	1 cut(s)	547
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	129, 610
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	6 cut(s)	90, 434, 492, 516, 594, 609
BseMII	CTCAG	6 cut(s)	127, 325, 336, 459, 561, 582
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	3 cut(s)	493, 532, 535
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	6 cut(s)	90, 434, 492, 516, 594, 609
BsmAI	GTCTC	2 cut(s)	325, 466
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	391, 470
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	6 cut(s)	128, 324, 335, 458, 560, 581
BspEI	TCCGGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	425
BspMAI	CTGCAG	2 cut(s)	90, 360
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	391, 470
BssNAI	GTATAC	1 cut(s)	515
BssNI	GRCGYC	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	129, 610
Bst4CI	ACNGT	2 cut(s)	7, 336
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	574
BstDEI	CTNAG	6 cut(s)	136, 311, 322, 445, 547, 568
BstDSI	CCRYGG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	394, 473
BstMAI	GTCTC	2 cut(s)	325, 466
BstMBI	GATC	2 cut(s)	391, 470
BstMWI	GCNNNNNNNGC	1 cut(s)	9
BstNI	CCWGG	2 cut(s)	129, 610
BstNSI	RCATGY	4 cut(s)	53, 268, 373, 419
BstSCI	CCNGG	2 cut(s)	127, 608
BstSFI	CTRYAG	2 cut(s)	86, 356
BstZ17I	GTATAC	1 cut(s)	515
Bsu36I	CCTNAGG	1 cut(s)	547
BsuI	GTATCC	2 cut(s)	544, 591
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	347
BtsI	GCAGTG	3 cut(s)	95, 222, 365
BtsIMutI	CAGTG	4 cut(s)	95, 133, 222, 365
Cac8I	GCNNGC	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	423
CseI	GACGC	1 cut(s)	307
CsiI	ACCWGGT	1 cut(s)	608
Csp6I	GTAC	3 cut(s)	17, 353, 441
CviAII	CATG	5 cut(s)	50, 242, 265, 370, 416
CviJI	RGCY	9 cut(s)	36, 132, 168, 342, 552, 559, 576, 583, 594
CviKI_1	RGCY	9 cut(s)	36, 132, 168, 342, 552, 559, 576, 583, 594
CviQI	GTAC	3 cut(s)	17, 353, 441
DdeI	CTNAG	6 cut(s)	136, 311, 322, 445, 547, 568
DpnI	GATC	2 cut(s)	393, 472
DpnII	GATC	2 cut(s)	391, 470
DraIII	CACNNNGTG	2 cut(s)	9, 217
EaeI	YGGCCR	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	127, 608
EcoRV	GATATC	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	5 cut(s)	53, 245, 268, 373, 419
FatI	CATG	5 cut(s)	49, 241, 264, 369, 415
FbaI	TGATCA	1 cut(s)	470
FblI	GTMKAC	1 cut(s)	514
FriOI	GRGCYC	1 cut(s)	38
FspBI	CTAG	2 cut(s)	291, 625
GsuI	CTGGAG	1 cut(s)	574
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	5 cut(s)	53, 245, 268, 373, 419
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	353, 515
Hpy188I	TCNGA	3 cut(s)	208, 314, 495
Hpy188III	TCNNGA	2 cut(s)	26, 55
Hpy8I	GTNNAC	2 cut(s)	353, 515
HpyAV	CCTTC	1 cut(s)	631
HpyCH4III	ACNGT	2 cut(s)	7, 336
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	9 cut(s)	3, 12, 88, 188, 229, 264, 358, 369, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	9
HpyF3I	CTNAG	6 cut(s)	136, 311, 322, 445, 547, 568
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	5 cut(s)	53, 245, 268, 373, 419
Kpn2I	TCCGGA	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	470
Kzo9I	GATC	2 cut(s)	391, 470
LweI	GCATC	3 cut(s)	21, 238, 277
MabI	ACCWGGT	1 cut(s)	608
MaeI	CTAG	2 cut(s)	291, 625
MaeII	ACGT	1 cut(s)	346
MalI	GATC	2 cut(s)	393, 472
MboI	GATC	2 cut(s)	391, 470
MboII	GAAGA	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	5 cut(s)	120, 158, 195, 224, 478
MluNI	TGGCCA	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	275, 473
Mox20I	TGGCCA	1 cut(s)	132
MroI	TCCGGA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	199
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	594
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	129, 610
MvaI	CCWGG	2 cut(s)	129, 610
MwoI	GCNNNNNNNGC	1 cut(s)	9
NdeII	GATC	2 cut(s)	391, 470
NlaIII	CATG	5 cut(s)	53, 245, 268, 373, 419
NlaIV	GGNNCC	1 cut(s)	425
NspI	RCATGY	4 cut(s)	53, 268, 373, 419
OliI	CACNNNNGTG	1 cut(s)	138
PciI	ACATGT	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	434
PscI	ACATGT	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	127, 608
PspGI	CCWGG	2 cut(s)	127, 608
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	423
PstI	CTGCAG	2 cut(s)	90, 360
PvuII	CAGCTG	1 cut(s)	594
RsaI	GTAC	3 cut(s)	18, 354, 442
RsaNI	GTAC	3 cut(s)	17, 353, 441
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	199
Sau3AI	GATC	2 cut(s)	391, 470
Sau96I	GGNCC	1 cut(s)	423
ScrFI	CCNGG	2 cut(s)	129, 610
SduI	GDGCHC	1 cut(s)	38
SexAI	ACCWGGT	1 cut(s)	608
SfaNI	GCATC	3 cut(s)	21, 238, 277
SfcI	CTRYAG	2 cut(s)	86, 356
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	553, 577
SmoI	CTYRAG	2 cut(s)	553, 577
Sse9I	AATT	5 cut(s)	120, 158, 195, 224, 478
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	2 cut(s)	291, 625
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	127, 608
TaaI	ACNGT	2 cut(s)	7, 336
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	394
TasI	AATT	5 cut(s)	120, 158, 195, 224, 478
TatI	WGTACW	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	199
Tru9I	TTAA	1 cut(s)	199
TscAI	CASTG	4 cut(s)	95, 140, 222, 365
TspDTI	ATGAA	2 cut(s)	208, 230
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	4 cut(s)	95, 140, 222, 365
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	4 cut(s)	120, 158, 195, 478
XceI	RCATGY	4 cut(s)	53, 268, 373, 419
XmiI	GTMKAC	1 cut(s)	514
XspI	CTAG	2 cut(s)	291, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.