Rorug07G0037100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001223
Physical Location & Seq
Reverse (-)
2611503 .. 2615367
3865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0037100.1

Sequence Viewer

Length: 924 bp
ATGCATCACTCGAAAACGGTAGCTCTGCTCTGGCTCGCCTCCGCCTTGCTCTTCTTCTCTCTCTTCCAAATGGCCCGCCGGGACTCCGATACGACACGCAATGATTACCCCTCCGGCACCGATTCTGTCAGGGATCGGAGGTCGGCATTGTACGAGAAGATGGCTAGGGATTTGGACGAGAAAGGTCCGCTGTTCCTGAAACACGGCCACACCTCTCAGTCTCTGTCGCTCTCCGACCTTTTTACGGTGAAGGATGATGGATCCGTGGCACCTGTGCTCAAGGCAGCAAATCCTCCTGTTCGTGCTAATGTGTTGTATCTCAGCACACAGTACTCGGTTCGAATCTCGGAGGTGCTCAAACCTATTCTGGATCCGTACTTTGATAAATTGATCTGGTTTCAGAACTCAAGTTTGTATCATTTTAGTATGTTCCACGCCTCGCATCATATTTCACCTGTTCCTGCGACCCAAGATGAGATTGAAGCTGAAGCAGCTGCTGTTAGAGCTGTTGTAGAAGGCCTGTGCCCTTTAAAGATTGTCTTGGAAAGAGTGGTTTTAACTTCAACAGGTGTGCTTCTTGGATGCTGGCAGGTAATGTCTGGATCAGATCCTATGACTGTCCGAGCAAAACTAAGGACCGCACTTCCACATGCACCTGAGAAGCAACTTTATGATGTTGGTATTCTTCATACATCATTTGCAAGGCTTTTGGGCGAGCCGAAGGCATCATCCATGGTCCTCTCTAGTACTTCGGATCAAATCCACTTCTTTCATGAGCTTGTTGATCGTATAAACAAAGAACTTCAAGGATTTGAGGCAGTGGTTACCGAGCTCTGGTATGTGGAGGAATTCGACGTTTTGGCCCTTGCGTTGAATGGAAGAATGAAGGTGCGCAAGTTCCAACTTGGGTGCTCAAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.48

Weight (kDa)

6.9

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 2 cut(s) 116, 268
AciI CCGC 4 cut(s) 42, 76, 188, 639
AclWI GGATC 8 cut(s) 141, 255, 268, 365, 378, 602, 610, 762
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 848
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 4 cut(s) 152, 332, 377, 748
AfiI CCNNNNNNNGG 2 cut(s) 244, 834
AgsI TTSAA 4 cut(s) 482, 564, 806, 874
AluBI AGCT 6 cut(s) 23, 485, 494, 506, 778, 832
AluI AGCT 6 cut(s) 23, 485, 494, 506, 778, 832
Alw21I GWGCWC 4 cut(s) 279, 357, 834, 914
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 8 cut(s) 141, 255, 268, 365, 378, 602, 610, 762
AlwNI CAGNNNCTG 2 cut(s) 223, 497
AoxI GGCC 4 cut(s) 72, 205, 517, 861
ApeKI GCWGC 3 cut(s) 284, 491, 494
ApoI RAATTY 1 cut(s) 848
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 5 cut(s) 73, 185, 636, 736, 862
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 259, 444
AsuII TTCGAA 1 cut(s) 340
AvaII GGWCC 3 cut(s) 185, 636, 736
BaeGI GKGCMC 1 cut(s) 527
BamHI GGATCC 2 cut(s) 260, 370
BanI GGYRCC 2 cut(s) 116, 268
BanII GRGCYC 1 cut(s) 834
Bbv12I GWGCWC 4 cut(s) 279, 357, 834, 914
BbvI GCAGC 3 cut(s) 296, 481, 503
BccI CCATC 2 cut(s) 154, 251
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 165, 744
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 3 cut(s) 285, 492, 495
BlsI GCNGC 3 cut(s) 286, 493, 496
BmcAI AGTACT 2 cut(s) 332, 748
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 3 cut(s) 185, 636, 736
BmgT120I GGNCC 5 cut(s) 73, 185, 636, 736, 862
BmiI GGNNCC 4 cut(s) 118, 262, 270, 372
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 4 cut(s) 13, 451, 572, 734
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 3 cut(s) 263, 391, 898
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 264, 732
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 834
Bse3DI GCAATG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 264, 732
BseGI GGATG 3 cut(s) 259, 587, 728
BseLI CCNNNNNNNGG 2 cut(s) 244, 834
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 3 cut(s) 230, 334, 648
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 3 cut(s) 296, 481, 503
BshFI GGCC 4 cut(s) 74, 207, 519, 863
BshNI GGYRCC 2 cut(s) 116, 268
BsiHKAI GWGCWC 4 cut(s) 279, 357, 834, 914
BsiSI CCGG 2 cut(s) 79, 114
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 244, 834
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 4 cut(s) 74, 207, 519, 863
Bsp119I TTCGAA 1 cut(s) 340
Bsp1286I GDGCHC 5 cut(s) 279, 357, 527, 834, 914
Bsp143I GATC 8 cut(s) 133, 260, 370, 390, 602, 607, 754, 784
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 4 cut(s) 42, 76, 188, 639
BspANI GGCC 4 cut(s) 74, 207, 519, 863
BspCNI CTCAG 3 cut(s) 229, 333, 649
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 4 cut(s) 118, 262, 270, 372
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 8 cut(s) 141, 255, 268, 365, 378, 602, 610, 762
BspQI GCTCTTC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 2 cut(s) 116, 268
BsrDI GCAATG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 264, 732
BssMI GATC 8 cut(s) 133, 260, 370, 390, 602, 607, 754, 784
BssT1I CCWWGG 1 cut(s) 732
Bst4CI ACNGT 4 cut(s) 19, 247, 330, 619
Bst6I CTCTTC 2 cut(s) 56, 68
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 4 cut(s) 36, 76, 587, 716
BstDEI CTNAG 4 cut(s) 216, 320, 632, 657
BstDSI CCRYGG 2 cut(s) 264, 732
BstEII GGTNACC 1 cut(s) 823
BstF5I GGATG 3 cut(s) 259, 587, 728
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 8 cut(s) 136, 263, 373, 393, 605, 610, 757, 787
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 8 cut(s) 133, 260, 370, 390, 602, 607, 754, 784
BstMWI GCNNNNNNNGC 2 cut(s) 491, 503
BstNSI RCATGY 1 cut(s) 653
BstPI GGTNACC 1 cut(s) 823
BstSCI CCNGG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 527
BstV1I GCAGC 3 cut(s) 296, 481, 503
BstX2I RGATCY 3 cut(s) 260, 370, 607
BstYI RGATCY 3 cut(s) 260, 370, 607
BsuRI GGCC 4 cut(s) 74, 207, 519, 863
BtgI CCRYGG 2 cut(s) 264, 732
BtsCI GGATG 3 cut(s) 259, 587, 728
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 1 cut(s) 825
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 4 cut(s) 36, 76, 587, 716
CaiI CAGNNNCTG 2 cut(s) 223, 497
CciI TCATGA 1 cut(s) 772
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 5 cut(s) 73, 185, 636, 736, 862
Csp6I GTAC 4 cut(s) 151, 331, 376, 747
CviAII CATG 3 cut(s) 650, 733, 773
CviQI GTAC 4 cut(s) 151, 331, 376, 747
DdeI CTNAG 4 cut(s) 216, 320, 632, 657
DpnI GATC 8 cut(s) 135, 262, 372, 392, 604, 609, 756, 786
DpnII GATC 8 cut(s) 133, 260, 370, 390, 602, 607, 754, 784
DraI TTTAAA 1 cut(s) 531
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 56, 68
EarI CTCTTC 2 cut(s) 56, 68
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 832
Eco130I CCWWGG 1 cut(s) 732
Eco147I AGGCCT 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 834
Eco47I GGWCC 3 cut(s) 185, 636, 736
Eco53kI GAGCTC 1 cut(s) 832
Eco57I CTGAAG 1 cut(s) 507
Eco91I GGTNACC 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 832
EcoO65I GGTNACC 1 cut(s) 823
EcoRI GAATTC 1 cut(s) 848
EcoT14I CCWWGG 1 cut(s) 732
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 3 cut(s) 653, 736, 776
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 95
FatI CATG 3 cut(s) 649, 732, 772
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 285, 492, 495
FokI GGATG 3 cut(s) 266, 594, 715
FriOI GRGCYC 1 cut(s) 834
Fsp4HI GCNGC 3 cut(s) 285, 492, 495
FspBI CTAG 2 cut(s) 165, 744
FspI TGCGCA 1 cut(s) 893
GlaI GCGC 1 cut(s) 893
GluI GCNGC 3 cut(s) 285, 492, 495
HaeIII GGCC 4 cut(s) 74, 207, 519, 863
HapII CCGG 2 cut(s) 79, 114
HhaI GCGC 1 cut(s) 894
Hin1II CATG 3 cut(s) 653, 736, 776
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HinfI GANTC 3 cut(s) 83, 122, 342
HpaII CCGG 2 cut(s) 79, 114
HphI GGTGA 2 cut(s) 259, 444
Hpy188I TCNGA 8 cut(s) 88, 138, 235, 349, 402, 607, 623, 754
Hpy188III TCNNGA 5 cut(s) 196, 368, 600, 773, 915
Hpy99I CGWCG 1 cut(s) 857
HpyAV CCTTC 4 cut(s) 244, 509, 715, 880
HpyCH4III ACNGT 4 cut(s) 19, 247, 330, 619
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 3 cut(s) 4, 653, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 491, 503
HpyF3I CTNAG 4 cut(s) 216, 320, 632, 657
HpySE526I ACGT 1 cut(s) 855
Hsp92II CATG 3 cut(s) 653, 736, 776
HspAI GCGC 1 cut(s) 892
Kzo9I GATC 8 cut(s) 133, 260, 370, 390, 602, 607, 754, 784
LguI GCTCTTC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 296, 481, 503
LweI GCATC 4 cut(s) 13, 451, 572, 734
MaeI CTAG 2 cut(s) 165, 744
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 1 cut(s) 823
MalI GATC 8 cut(s) 135, 262, 372, 392, 604, 609, 756, 786
MboI GATC 8 cut(s) 133, 260, 370, 390, 602, 607, 754, 784
MboII GAAGA 6 cut(s) 43, 46, 55, 169, 677, 891
MflI RGATCY 3 cut(s) 260, 370, 607
MhlI GDGCHC 5 cut(s) 279, 357, 527, 834, 914
MluCI AATT 2 cut(s) 386, 848
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 258
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 530, 557
MspA1I CMGCKG 2 cut(s) 190, 494
MspI CCGG 2 cut(s) 79, 114
MspR9I CCNGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 491, 503
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 732
NdeII GATC 8 cut(s) 133, 260, 370, 390, 602, 607, 754, 784
NlaIII CATG 3 cut(s) 653, 736, 776
NlaIV GGNNCC 4 cut(s) 118, 262, 270, 372
NsbI TGCGCA 1 cut(s) 893
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 653
NspV TTCGAA 1 cut(s) 340
PagI TCATGA 1 cut(s) 772
PceI AGGCCT 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 122, 342
PkrI GCNGC 3 cut(s) 286, 493, 496
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 834
PspEI GGTNACC 1 cut(s) 823
PspN4I GGNNCC 4 cut(s) 118, 262, 270, 372
PspPI GGNCC 5 cut(s) 73, 185, 636, 736, 862
PstNI CAGNNNCTG 2 cut(s) 223, 497
PsuI RGATCY 3 cut(s) 260, 370, 607
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 4 cut(s) 152, 332, 377, 748
RsaNI GTAC 4 cut(s) 151, 331, 376, 747
SacI GAGCTC 1 cut(s) 834
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 530, 557
SatI GCNGC 3 cut(s) 285, 492, 495
Sau3AI GATC 8 cut(s) 133, 260, 370, 390, 602, 607, 754, 784
Sau96I GGNCC 5 cut(s) 73, 185, 636, 736, 862
ScaI AGTACT 2 cut(s) 332, 748
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 5 cut(s) 279, 357, 527, 834, 914
SfaNI GCATC 4 cut(s) 13, 451, 572, 734
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 3 cut(s) 185, 636, 736
SmlI CTYRAG 3 cut(s) 278, 406, 913
SmoI CTYRAG 3 cut(s) 278, 406, 913
Sse9I AATT 2 cut(s) 386, 848
SseBI AGGCCT 1 cut(s) 519
SsiI CCGC 4 cut(s) 42, 76, 188, 639
SspMI CTAG 2 cut(s) 165, 744
SstI GAGCTC 1 cut(s) 834
StuI AGGCCT 1 cut(s) 519
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 4 cut(s) 19, 247, 330, 619
TaiI ACGT 1 cut(s) 858
TaqI TCGA 3 cut(s) 11, 340, 852
TasI AATT 2 cut(s) 386, 848
TatI WGTACW 2 cut(s) 330, 746
TfiI GAWTC 2 cut(s) 122, 342
Tru1I TTAA 2 cut(s) 530, 557
Tru9I TTAA 2 cut(s) 530, 557
TscAI CASTG 1 cut(s) 825
TseI GCWGC 3 cut(s) 284, 491, 494
TspDTI ATGAA 3 cut(s) 677, 761, 899
TspGWI ACGGA 2 cut(s) 253, 363
TspRI CASTG 1 cut(s) 825
VpaK11BI GGWCC 3 cut(s) 185, 636, 736
XapI RAATTY 1 cut(s) 848
XceI RCATGY 1 cut(s) 653
XspI CTAG 2 cut(s) 165, 744
ZrmI AGTACT 2 cut(s) 332, 748
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.