Rh1DG261000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001223
Physical Location & Seq
Forward (+)
47794199 .. 47797833
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG261000.1

Sequence Viewer

Length: 879 bp
ATGTCAAGGTATATATGTTGTGGAGGATATATGCCATGCAGCGGAAAGTGTGGAGAGAAACACTGCCCTGCATTTTGTCTCTGCTGTGAGGTTTTATGTTGCTTTGCACCTTCAGTTTCCTCAACTCGCTATCTAATACAAGATGAGTTCAATATAAAGACAACACCATGTGATAACTGCATTATTGGATGCATGGTCTGTCTCAAACAAATATCATGTATTTGCAGCTTGCTTGCTTGCCTAACAGGAAGTGGTGAACTCGGTGATATTGCTGAGTGCCTGGGCTGTATTTCTGATACAGTTTATTGCTCGGTTTGTGCTTGCATGCAGACGCAGCACAAGATTGAACTGGACAAAAGAGATGGCAAGTATGCTCCACAGCCAGTTATGGCAGCTCCTCCAACGCAGCAGATGTCACGCGCCGATCACTCAATTCCTTCCCCCGGATATCCACCTCAAGGATCTCCACCGATGGGATATCATCAACCTCCACCAATGGGATATCCTCATCAACCACCAGGATATATGCATCCTCCGGCATATGGGCAGCCTATTAACGGGTCCTCAAAAGGCGGCCATGATCCATATCCTCCTGTTCCTTATCATCCACAACATCCACCATATCCACCTCATATGTATCATCCACATGCTGCTTATTTTCCAGGGCCAGCACCAGGTGCTTATCCTGCAGGTCCACCTCCAGGTCTTTATCCTCAAGGTCCAGACTCGGGCTTTGTTCCAGGTCCAGAATCTGGTCCTTATCCTCCTGCACGACCTCCTCCACCTCCTCCTGGCTATCACGCAGAACCAAGTGCACCTCTTCCTCCTCATGAAGAACACCCTGAAACTGCTCCGACTAGCAGCAATCCTCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

31.12

Weight (kDa)

6.17

Isoelectric Point (pI)

78.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 680
AccB7I CCANNNNNTGG 1 cut(s) 752
AccII CGCG 1 cut(s) 420
AciI CCGC 2 cut(s) 42, 573
AclWI GGATC 2 cut(s) 469, 575
AcoI YGGCCR 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 96
AdeI CACNNNGTG 2 cut(s) 170, 677
AgsI TTSAA 2 cut(s) 151, 347
AjnI CCWGG 7 cut(s) 279, 517, 661, 673, 700, 739, 790
AluBI AGCT 2 cut(s) 228, 395
AluI AGCT 2 cut(s) 228, 395
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 2 cut(s) 83, 206
Alw44I GTGCAC 1 cut(s) 813
AlwI GGATC 2 cut(s) 469, 575
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 1 cut(s) 727
AoxI GGCC 2 cut(s) 574, 665
ApaLI GTGCAC 1 cut(s) 813
ApeKI GCWGC 8 cut(s) 39, 225, 334, 392, 406, 547, 650, 861
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 6 cut(s) 561, 665, 692, 719, 743, 755
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 2 cut(s) 266, 275
AvaI CYCGRG 1 cut(s) 727
AvaII GGWCC 5 cut(s) 561, 692, 719, 743, 755
BaeGI GKGCMC 1 cut(s) 817
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 8 cut(s) 51, 237, 346, 404, 418, 559, 637, 873
BccI CCATC 2 cut(s) 356, 466
BciT130I CCWGG 7 cut(s) 281, 519, 663, 675, 702, 741, 792
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 83, 206
BfaI CTAG 1 cut(s) 858
BfmI CTRYAG 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 680
BisI GCNGC 9 cut(s) 40, 226, 335, 393, 407, 548, 574, 651, 862
BlsI GCNGC 9 cut(s) 41, 227, 336, 394, 408, 549, 575, 652, 863
Bme1390I CCNGG 8 cut(s) 281, 444, 519, 663, 675, 702, 741, 792
Bme18I GGWCC 5 cut(s) 561, 692, 719, 743, 755
BmeT110I CYCGRG 1 cut(s) 727
BmgT120I GGNCC 6 cut(s) 561, 665, 692, 719, 743, 755
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 8 cut(s) 281, 444, 519, 663, 675, 702, 741, 792
BmsI GCATC 2 cut(s) 179, 538
BpmI CTGGAG 1 cut(s) 684
BpuEI CTTGAG 2 cut(s) 441, 699
BpuMI CCSGG 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 585
BsaJI CCNNGG 3 cut(s) 280, 442, 662
Bse1I ACTGG 2 cut(s) 354, 383
Bse8I GATNNNNATC 1 cut(s) 585
BseBI CCWGG 7 cut(s) 281, 519, 663, 675, 702, 741, 792
BseDI CCNNGG 3 cut(s) 280, 442, 662
BseGI GGATG 5 cut(s) 194, 529, 604, 613, 640
BseJI GATNNNNATC 1 cut(s) 585
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 354, 383
BseRI GAGGAG 4 cut(s) 387, 768, 777, 816
BseSI GKGCMC 1 cut(s) 817
BseXI GCAGC 8 cut(s) 51, 237, 346, 404, 418, 559, 637, 873
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 2 cut(s) 576, 667
BsiHKAI GWGCWC 1 cut(s) 817
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 2 cut(s) 444, 536
BsmAI GTCTC 2 cut(s) 83, 206
BsnI GGCC 2 cut(s) 576, 667
BsoBI CYCGRG 1 cut(s) 727
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 3 cut(s) 424, 461, 580
BspACI CCGC 2 cut(s) 42, 573
BspANI GGCC 2 cut(s) 576, 667
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 420
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 1 cut(s) 562
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 2 cut(s) 469, 575
BsrI ACTGG 2 cut(s) 354, 383
BssECI CCNNGG 3 cut(s) 280, 442, 662
BssMI GATC 3 cut(s) 424, 461, 580
Bst2UI CCWGG 7 cut(s) 281, 519, 663, 675, 702, 741, 792
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 825
BstAPI GCANNNNNTGC 1 cut(s) 677
BstC8I GCNNGC 6 cut(s) 230, 234, 238, 322, 326, 669
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 5 cut(s) 194, 529, 604, 613, 640
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 3 cut(s) 427, 464, 583
BstMAI GTCTC 2 cut(s) 83, 206
BstMBI GATC 3 cut(s) 424, 461, 580
BstMWI GCNNNNNNNGC 3 cut(s) 334, 677, 686
BstNI CCWGG 7 cut(s) 281, 519, 663, 675, 702, 741, 792
BstNSI RCATGY 2 cut(s) 328, 650
BstSCI CCNGG 8 cut(s) 279, 442, 517, 661, 673, 700, 739, 790
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 817
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 8 cut(s) 51, 237, 346, 404, 418, 559, 637, 873
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 2 cut(s) 576, 667
BtsCI GGATG 5 cut(s) 194, 529, 604, 613, 640
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 6 cut(s) 230, 234, 238, 322, 326, 669
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 1 cut(s) 829
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 6 cut(s) 561, 665, 692, 719, 743, 755
CseI GACGC 1 cut(s) 340
CsiI ACCWGGT 1 cut(s) 673
CviAII CATG 8 cut(s) 36, 168, 193, 216, 325, 578, 647, 830
CviJI RGCY 9 cut(s) 228, 285, 382, 395, 550, 576, 667, 732, 795
CviKI_1 RGCY 9 cut(s) 228, 285, 382, 395, 550, 576, 667, 732, 795
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 426, 463, 582
DpnII GATC 3 cut(s) 424, 461, 580
DraIII CACNNNGTG 2 cut(s) 170, 677
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
Eco32I GATATC 3 cut(s) 449, 479, 503
Eco47I GGWCC 5 cut(s) 561, 692, 719, 743, 755
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 727
EcoO109I RGGNCCY 1 cut(s) 561
EcoRII CCWGG 7 cut(s) 279, 517, 661, 673, 700, 739, 790
EcoRV GATATC 3 cut(s) 449, 479, 503
EcoT22I ATGCAT 2 cut(s) 194, 531
FaeI CATG 8 cut(s) 39, 171, 196, 219, 328, 581, 650, 833
FatI CATG 8 cut(s) 35, 167, 192, 215, 324, 577, 646, 829
FauNDI CATATG 2 cut(s) 541, 633
Fnu4HI GCNGC 9 cut(s) 40, 226, 335, 393, 407, 548, 574, 651, 862
FokI GGATG 5 cut(s) 201, 516, 591, 600, 627
Fsp4HI GCNGC 9 cut(s) 40, 226, 335, 393, 407, 548, 574, 651, 862
FspBI CTAG 1 cut(s) 858
GlaI GCGC 1 cut(s) 421
GluI GCNGC 9 cut(s) 40, 226, 335, 393, 407, 548, 574, 651, 862
GsuI CTGGAG 1 cut(s) 684
HaeIII GGCC 2 cut(s) 576, 667
HapII CCGG 2 cut(s) 444, 536
HgaI GACGC 1 cut(s) 340
HhaI GCGC 1 cut(s) 422
Hin1II CATG 8 cut(s) 39, 171, 196, 219, 328, 581, 650, 833
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HinfI GANTC 2 cut(s) 725, 749
HpaII CCGG 2 cut(s) 444, 536
HphI GGTGA 2 cut(s) 266, 275
Hpy166II GTNNAC 3 cut(s) 257, 695, 815
Hpy188I TCNGA 2 cut(s) 295, 855
Hpy188III TCNNGA 3 cut(s) 722, 746, 830
Hpy8I GTNNAC 3 cut(s) 257, 695, 815
HpyAV CCTTC 2 cut(s) 120, 447
HpyCH4III ACNGT 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 677, 686
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 8 cut(s) 39, 171, 196, 219, 328, 581, 650, 833
HspAI GCGC 1 cut(s) 420
Kzo9I GATC 3 cut(s) 424, 461, 580
LmnI GCTCC 3 cut(s) 379, 400, 856
Lsp1109I GCAGC 8 cut(s) 51, 237, 346, 404, 418, 559, 637, 873
LweI GCATC 2 cut(s) 179, 538
MabI ACCWGGT 1 cut(s) 673
MaeI CTAG 1 cut(s) 858
MaeIII GTNAC 1 cut(s) 414
MalI GATC 3 cut(s) 426, 463, 582
MboI GATC 3 cut(s) 424, 461, 580
MboII GAAGA 2 cut(s) 812, 845
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 817
MluCI AATT 1 cut(s) 432
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 2 cut(s) 425, 878
Mph1103I ATGCAT 2 cut(s) 194, 531
MseI TTAA 1 cut(s) 555
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 2 cut(s) 444, 536
MspR9I CCNGG 8 cut(s) 281, 444, 519, 663, 675, 702, 741, 792
MvaI CCWGG 7 cut(s) 281, 519, 663, 675, 702, 741, 792
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 334, 677, 686
NciI CCSGG 1 cut(s) 444
NdeI CATATG 2 cut(s) 541, 633
NdeII GATC 3 cut(s) 424, 461, 580
NlaIII CATG 8 cut(s) 39, 171, 196, 219, 328, 581, 650, 833
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 414
NsiI ATGCAT 2 cut(s) 194, 531
NspI RCATGY 2 cut(s) 328, 650
PaeI GCATGC 1 cut(s) 328
PagI TCATGA 1 cut(s) 829
PfeI GAWTC 1 cut(s) 749
PflMI CCANNNNNTGG 1 cut(s) 752
PkrI GCNGC 9 cut(s) 41, 227, 336, 394, 408, 549, 575, 652, 863
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PpuMI RGGWCCY 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 561
Psp6I CCWGG 7 cut(s) 279, 517, 661, 673, 700, 739, 790
PspGI CCWGG 7 cut(s) 279, 517, 661, 673, 700, 739, 790
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 6 cut(s) 561, 665, 692, 719, 743, 755
PspPPI RGGWCCY 1 cut(s) 561
PstI CTGCAG 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 645
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 9 cut(s) 40, 226, 335, 393, 407, 548, 574, 651, 862
Sau3AI GATC 3 cut(s) 424, 461, 580
Sau96I GGNCC 6 cut(s) 561, 665, 692, 719, 743, 755
SbfI CCTGCAGG 1 cut(s) 691
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 8 cut(s) 281, 444, 519, 663, 675, 702, 741, 792
SdaI CCTGCAGG 1 cut(s) 691
SduI GDGCHC 1 cut(s) 817
SexAI ACCWGGT 1 cut(s) 673
SfaNI GCATC 2 cut(s) 179, 538
SfcI CTRYAG 1 cut(s) 687
SinI GGWCC 5 cut(s) 561, 692, 719, 743, 755
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 2 cut(s) 456, 714
SmoI CTYRAG 2 cut(s) 456, 714
SphI GCATGC 1 cut(s) 328
Sse8387I CCTGCAGG 1 cut(s) 691
Sse9I AATT 1 cut(s) 432
SsiI CCGC 2 cut(s) 42, 573
SspMI CTAG 1 cut(s) 858
StyD4I CCNGG 8 cut(s) 279, 442, 517, 661, 673, 700, 739, 790
TaaI ACNGT 1 cut(s) 301
TasI AATT 1 cut(s) 432
TauI GCSGC 1 cut(s) 576
TfiI GAWTC 1 cut(s) 749
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 1 cut(s) 414
TseI GCWGC 8 cut(s) 39, 225, 334, 392, 406, 547, 650, 861
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 1 cut(s) 846
TspRI CASTG 1 cut(s) 68
Van91I CCANNNNNTGG 1 cut(s) 752
VneI GTGCAC 1 cut(s) 813
VpaK11BI GGWCC 5 cut(s) 561, 692, 719, 743, 755
XceI RCATGY 2 cut(s) 328, 650
XspI CTAG 1 cut(s) 858
Zsp2I ATGCAT 2 cut(s) 194, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.