Rh7BG164200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001223
Physical Location & Seq
Reverse (-)
12722580 .. 12726468
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG164200.1

Sequence Viewer

Length: 663 bp
ATGATGCAAAACATGATTAGCACTCTTCCCTATGTAATAACTGAGAATGATTTGAAATTATGTTCAGTAAAAGTTTATTTGATACTTCAGTATCTTGTAACTTGGATTTGCAGCTGCAGAGAGCTTCTCCTTCTTTCGATTTTAATTTCCTTTCTATGTTTGATGTTTCAGGTGTTTTTGTGCTTTGGGAATTCCGTGGCTTCAACTCGCTTTCTGTTGCAAGATGAATTTAATATTCAGACCACGCAGTGTGATAATTGCATCATTGGTTTCATGGTCTGCCTACAACAAGTTGCATGTATTTTCTCCATAGTTGCAATGCTAGTTGGAAGTGAAGAAATCTCAGAGGCGTCTCAGTTATTGAACTGTTTGGCTGACGTGGTGTACTGCAGTGTGTGTGCATGTATGCAGACACAACACAAGATCGAAATGGACAAGCGTGATGGCATGTTTGGACCCCAACCAATGGCAGTACCTCAGTTTCAGCAGATGTCTCGCATTGATCAACAAATTCCTCCCAATGTCGGATATCCTCCTCAACCAGTATACGGGCAACCCTATGGGTATCCACCTCCTCCTCAGGCTCAAGGCTATCCACCTCAGCAGGCTCAAGGCTATCCTCCAGCTGGATACCCTCCACCTGGTTATCCACCTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.65

Weight (kDa)

4.67

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AccI GTMKAC 1 cut(s) 546
AcsI RAATTY 3 cut(s) 190, 227, 510
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 2 cut(s) 386, 474
AfiI CCNNNNNNNGG 5 cut(s) 466, 524, 548, 626, 641
AgsI TTSAA 3 cut(s) 55, 204, 364
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 3 cut(s) 114, 124, 626
AluI AGCT 3 cut(s) 114, 124, 626
Alw26I GTCTC 2 cut(s) 357, 498
ApeKI GCWGC 2 cut(s) 111, 114
ApoI RAATTY 3 cut(s) 190, 227, 510
AspS9I GGNCC 1 cut(s) 455
AvaII GGWCC 1 cut(s) 455
AxyI CCTNAGG 1 cut(s) 579
BaeI ACNNNNGTAYC 4 cut(s) 74, 74, 107, 107
BbvCI CCTCAGC 1 cut(s) 600
BbvI GCAGC 2 cut(s) 101, 123
BccI CCATC 1 cut(s) 437
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 2 cut(s) 576, 623
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 357, 498
BfaI CTAG 2 cut(s) 323, 657
BfmI CTRYAG 2 cut(s) 115, 388
BfuI GTATCC 2 cut(s) 576, 623
BisI GCNGC 2 cut(s) 112, 115
BlsI GCNGC 2 cut(s) 113, 116
Bme1390I CCNGG 1 cut(s) 642
Bme18I GGWCC 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpmI CTGGAG 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 600
BpuEI CTTGAG 2 cut(s) 570, 594
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 5 cut(s) 466, 524, 548, 626, 641
Bse1I ACTGG 1 cut(s) 542
Bse21I CCTNAGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 1 cut(s) 195
BseLI CCNNNNNNNGG 5 cut(s) 466, 524, 548, 626, 641
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 6 cut(s) 33, 357, 368, 491, 593, 614
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 3 cut(s) 525, 564, 567
BseXI GCAGC 2 cut(s) 101, 123
BslI CCNNNNNNNGG 5 cut(s) 466, 524, 548, 626, 641
BsmAI GTCTC 2 cut(s) 357, 498
BsmBI CGTCTC 1 cut(s) 357
Bsp143I GATC 2 cut(s) 423, 502
BspCNI CTCAG 6 cut(s) 34, 356, 367, 490, 592, 613
BspLI GGNNCC 1 cut(s) 457
BspMAI CTGCAG 2 cut(s) 119, 392
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 423, 502
BssNAI GTATAC 1 cut(s) 547
BssNI GRCGYC 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 6 cut(s) 42, 343, 354, 477, 579, 600
BstDSI CCRYGG 1 cut(s) 195
BstKTI GATC 2 cut(s) 426, 505
BstMAI GTCTC 2 cut(s) 357, 498
BstMBI GATC 2 cut(s) 423, 502
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 3 cut(s) 300, 405, 451
BstSCI CCNGG 1 cut(s) 640
BstSFI CTRYAG 2 cut(s) 115, 388
BstV1I GCAGC 2 cut(s) 101, 123
BstZ17I GTATAC 1 cut(s) 547
Bsu36I CCTNAGG 1 cut(s) 579
BsuI GTATCC 2 cut(s) 576, 623
BtgI CCRYGG 1 cut(s) 195
BtrI CACGTC 1 cut(s) 379
BtsI GCAGTG 2 cut(s) 254, 397
BtsIMutI CAGTG 2 cut(s) 254, 397
Cac8I GCNNGC 1 cut(s) 606
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 1 cut(s) 339
CsiI ACCWGGT 1 cut(s) 640
Csp6I GTAC 2 cut(s) 385, 473
CviAII CATG 5 cut(s) 13, 274, 297, 402, 448
CviJI RGCY 9 cut(s) 114, 124, 200, 374, 584, 591, 608, 615, 626
CviKI_1 RGCY 9 cut(s) 114, 124, 200, 374, 584, 591, 608, 615, 626
CviQI GTAC 2 cut(s) 385, 473
DdeI CTNAG 6 cut(s) 42, 343, 354, 477, 579, 600
DpnI GATC 2 cut(s) 425, 504
DpnII GATC 2 cut(s) 423, 502
DraIII CACNNNGTG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 640
EcoRV GATATC 1 cut(s) 530
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 5 cut(s) 16, 277, 300, 405, 451
FatI CATG 5 cut(s) 12, 273, 296, 401, 447
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 2 cut(s) 112, 115
Fsp4HI GCNGC 2 cut(s) 112, 115
FspBI CTAG 2 cut(s) 323, 657
GluI GCNGC 2 cut(s) 112, 115
GsuI CTGGAG 1 cut(s) 606
HgaI GACGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 5 cut(s) 16, 277, 300, 405, 451
Hpy166II GTNNAC 2 cut(s) 385, 547
Hpy188I TCNGA 3 cut(s) 240, 346, 527
Hpy8I GTNNAC 2 cut(s) 385, 547
HpyAV CCTTC 2 cut(s) 140, 663
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 378
HpyF3I CTNAG 6 cut(s) 42, 343, 354, 477, 579, 600
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 5 cut(s) 16, 277, 300, 405, 451
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 2 cut(s) 423, 502
LpnPI CCDG 8 cut(s) 155, 555, 566, 590, 612, 627, 636, 654
Lsp1109I GCAGC 2 cut(s) 101, 123
LweI GCATC 1 cut(s) 270
MabI ACCWGGT 1 cut(s) 640
MaeI CTAG 2 cut(s) 323, 657
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 425, 504
MboI GATC 2 cut(s) 423, 502
MboII GAAGA 2 cut(s) 17, 347
MluCI AATT 6 cut(s) 56, 144, 190, 227, 256, 510
MmeI TCCRAC 2 cut(s) 307, 505
MseI TTAA 2 cut(s) 143, 231
MspA1I CMGCKG 2 cut(s) 114, 626
MspR9I CCNGG 1 cut(s) 642
MvaI CCWGG 1 cut(s) 642
NdeII GATC 2 cut(s) 423, 502
NlaIII CATG 5 cut(s) 16, 277, 300, 405, 451
NlaIV GGNNCC 1 cut(s) 457
NspI RCATGY 3 cut(s) 300, 405, 451
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 2 cut(s) 113, 116
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 2 cut(s) 119, 392
PvuII CAGCTG 2 cut(s) 114, 626
RsaI GTAC 2 cut(s) 386, 474
RsaNI GTAC 2 cut(s) 385, 473
SaqAI TTAA 2 cut(s) 143, 231
SatI GCNGC 2 cut(s) 112, 115
Sau3AI GATC 2 cut(s) 423, 502
Sau96I GGNCC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 642
SexAI ACCWGGT 1 cut(s) 640
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 2 cut(s) 115, 388
SinI GGWCC 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 585, 609
SmoI CTYRAG 2 cut(s) 585, 609
Sse9I AATT 6 cut(s) 56, 144, 190, 227, 256, 510
SspI AATATT 1 cut(s) 235
SspMI CTAG 2 cut(s) 323, 657
StyD4I CCNGG 1 cut(s) 640
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 137, 426
TasI AATT 6 cut(s) 56, 144, 190, 227, 256, 510
TatI WGTACW 1 cut(s) 384
Tru1I TTAA 2 cut(s) 143, 231
Tru9I TTAA 2 cut(s) 143, 231
TscAI CASTG 2 cut(s) 254, 397
TseI GCWGC 2 cut(s) 111, 114
TspDTI ATGAA 2 cut(s) 240, 262
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 2 cut(s) 254, 397
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 3 cut(s) 190, 227, 510
XceI RCATGY 3 cut(s) 300, 405, 451
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 2 cut(s) 323, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.