Rh7AG162100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001223
Physical Location & Seq
Reverse (-)
13691136 .. 13706754
15619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG162100.1

Sequence Viewer

Length: 552 bp
ATGCCCTGCAGTGGTAGATGTGGGGAAAGTAAATGCCCTGAATTTTGCCTGGCCACTGAGGTGTTTTTGTGCTTTGGGAATTCCGTGGCTTCAACTCGCTTTCTGTTGCAAGATGAATTTAATATTCAGACCACGCAGTGTGATAATTGCATCATTGGTTTCATGGTCTGCCTACAACAAGTTGCATGTATTTTCTCCATAGTTGCGATGCTAGTTGGAAGTGAAGAAATCTCAGAGGCGTCTCAGTTATTGAACTGTTTGGCTGACGTGGTGTACTGCAGTGTGTGTGCATGTATGCAGACACAACACAAGATTGAAATGGACAAGCGTGATGGCATGTTTGGCCCCCAACCAATGGCAGTACCTCAGTTTCAGCAGATGTCTCGCATTGATCAACAAATTCCTCCCAATGTCGGATATCCTCCTCAACCAGTATACGGGCAACCCTATGGGTATCCACCTCCTCCTCAGGCTCAAGGCTATCCACCTCAGCAGGCTCAAGGCTATCCTCCAGCTGGATACCCTCCACCTGGTTATCCACCTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.09

Weight (kDa)

4.55

Isoelectric Point (pI)

70.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 355
AccI GTMKAC 1 cut(s) 435
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 4 cut(s) 41, 79, 116, 399
AcyI GRCGYC 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 138
AfaI GTAC 2 cut(s) 275, 363
AfiI CCNNNNNNNGG 6 cut(s) 11, 355, 413, 437, 515, 530
AgsI TTSAA 3 cut(s) 93, 253, 317
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 2 cut(s) 48, 529
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw26I GTCTC 2 cut(s) 246, 387
AoxI GGCC 2 cut(s) 51, 343
ApoI RAATTY 4 cut(s) 41, 79, 116, 399
AspS9I GGNCC 1 cut(s) 344
AxyI CCTNAGG 1 cut(s) 468
BalI TGGCCA 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 489
BccI CCATC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 2 cut(s) 50, 531
BciVI GTATCC 2 cut(s) 465, 512
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 246, 387
BfaI CTAG 2 cut(s) 212, 546
BfmI CTRYAG 2 cut(s) 7, 277
BfuI GTATCC 2 cut(s) 465, 512
Bme1390I CCNGG 2 cut(s) 50, 531
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 50, 531
BmsI GCATC 2 cut(s) 159, 198
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 489
BpuEI CTTGAG 2 cut(s) 459, 483
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 355, 413, 437, 515, 530
Bse1I ACTGG 1 cut(s) 431
Bse21I CCTNAGG 1 cut(s) 468
BseBI CCWGG 2 cut(s) 50, 531
BseDI CCNNGG 1 cut(s) 84
BseLI CCNNNNNNNGG 6 cut(s) 11, 355, 413, 437, 515, 530
BseMII CTCAG 6 cut(s) 48, 246, 257, 380, 482, 503
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 3 cut(s) 414, 453, 456
BshFI GGCC 2 cut(s) 53, 345
BslI CCNNNNNNNGG 6 cut(s) 11, 355, 413, 437, 515, 530
BsmAI GTCTC 2 cut(s) 246, 387
BsmBI CGTCTC 1 cut(s) 246
BsnI GGCC 2 cut(s) 53, 345
Bsp143I GATC 1 cut(s) 391
BspANI GGCC 2 cut(s) 53, 345
BspCNI CTCAG 6 cut(s) 49, 245, 256, 379, 481, 502
BspLI GGNNCC 1 cut(s) 346
BspMAI CTGCAG 2 cut(s) 11, 281
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 391
BssNAI GTATAC 1 cut(s) 436
BssNI GRCGYC 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 436
Bst2UI CCWGG 2 cut(s) 50, 531
Bst4CI ACNGT 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 6 cut(s) 57, 232, 243, 366, 468, 489
BstDSI CCRYGG 1 cut(s) 84
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 2 cut(s) 246, 387
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 2 cut(s) 50, 531
BstNSI RCATGY 3 cut(s) 189, 294, 340
BstSCI CCNGG 2 cut(s) 48, 529
BstSFI CTRYAG 2 cut(s) 7, 277
BstZ17I GTATAC 1 cut(s) 436
Bsu36I CCTNAGG 1 cut(s) 468
BsuI GTATCC 2 cut(s) 465, 512
BsuRI GGCC 2 cut(s) 53, 345
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 221
BtrI CACGTC 1 cut(s) 268
BtsI GCAGTG 3 cut(s) 16, 143, 286
BtsIMutI CAGTG 4 cut(s) 16, 54, 143, 286
Cac8I GCNNGC 1 cut(s) 495
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 1 cut(s) 228
CsiI ACCWGGT 1 cut(s) 529
Csp6I GTAC 2 cut(s) 274, 362
CviAII CATG 4 cut(s) 163, 186, 291, 337
CviJI RGCY 9 cut(s) 53, 89, 263, 345, 473, 480, 497, 504, 515
CviKI_1 RGCY 9 cut(s) 53, 89, 263, 345, 473, 480, 497, 504, 515
CviQI GTAC 2 cut(s) 274, 362
DdeI CTNAG 6 cut(s) 57, 232, 243, 366, 468, 489
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
DraIII CACNNNGTG 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 51
Eco32I GATATC 1 cut(s) 419
Eco81I CCTNAGG 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 48, 529
EcoRV GATATC 1 cut(s) 419
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 4 cut(s) 166, 189, 294, 340
FaiI YATR 8 cut(s) 164, 187, 200, 292, 296, 338, 436, 450
FatI CATG 4 cut(s) 162, 185, 290, 336
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 435
FspBI CTAG 2 cut(s) 212, 546
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 2 cut(s) 53, 345
HgaI GACGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 4 cut(s) 166, 189, 294, 340
Hpy166II GTNNAC 2 cut(s) 274, 436
Hpy188I TCNGA 3 cut(s) 129, 235, 416
Hpy8I GTNNAC 2 cut(s) 274, 436
HpyAV CCTTC 1 cut(s) 552
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 7 cut(s) 9, 109, 150, 185, 279, 290, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 6 cut(s) 57, 232, 243, 366, 468, 489
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 4 cut(s) 166, 189, 294, 340
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 1 cut(s) 391
LweI GCATC 2 cut(s) 159, 198
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 2 cut(s) 212, 546
MaeII ACGT 1 cut(s) 267
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 1 cut(s) 236
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 5 cut(s) 41, 79, 116, 145, 399
MluNI TGGCCA 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 196, 394
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 515
MspR9I CCNGG 2 cut(s) 50, 531
MvaI CCWGG 2 cut(s) 50, 531
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 1 cut(s) 391
NlaIII CATG 4 cut(s) 166, 189, 294, 340
NlaIV GGNNCC 1 cut(s) 346
NspI RCATGY 3 cut(s) 189, 294, 340
OliI CACNNNNGTG 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 355
Psp6I CCWGG 2 cut(s) 48, 529
PspGI CCWGG 2 cut(s) 48, 529
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 2 cut(s) 11, 281
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 275, 363
RsaNI GTAC 2 cut(s) 274, 362
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 120
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 50, 531
SetI ASST 9 cut(s) 63, 270, 367, 463, 490, 517, 532, 544, 551
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 2 cut(s) 159, 198
SfcI CTRYAG 2 cut(s) 7, 277
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 474, 498
SmoI CTYRAG 2 cut(s) 474, 498
Sse9I AATT 5 cut(s) 41, 79, 116, 145, 399
SspI AATATT 1 cut(s) 124
SspMI CTAG 2 cut(s) 212, 546
StyD4I CCNGG 2 cut(s) 48, 529
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 270
TasI AATT 5 cut(s) 41, 79, 116, 145, 399
TatI WGTACW 1 cut(s) 273
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 4 cut(s) 16, 61, 143, 286
TspDTI ATGAA 2 cut(s) 129, 151
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 4 cut(s) 16, 61, 143, 286
Van91I CCANNNNNTGG 1 cut(s) 355
XapI RAATTY 4 cut(s) 41, 79, 116, 399
XceI RCATGY 3 cut(s) 189, 294, 340
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 2 cut(s) 212, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.