Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Forward (+)

49234612 .. 49237912

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG266100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGCTTGACGAAAATGTGGAGAAGATGCAGCAACGGCAGCACTACAAGAATCTATGGCACACCGATTTGATGGGCACCATCACTGCCGATACTGGCTATTGTTGCTTTGCTTGTTTCTGCGGTTATTGTGCTTCTTACATGTTACGGAAACGAGCTCTTTATGATGATATGACAAGGTACAAATGCTGTGGTGGATATTTTCCATGCAGTGGAAAATGTGGAGAAAGTAAATGCCCTGAATTTTGTCTCGTCACTGAGGTTTGCTGCTGCTTTGGAACGTCTGTTTCTTCAACTCGATATCTACTACAAGATGAATTCAACATACAGACGACTCCATGCGATAACTGCATCATTGGATTTATGATCATCCTAAAACAAGTTGCATGTATATTCTCCATACTTGCTTGCATAACTGGAAGTGAAGAAATCAGGGATATTGCCGATGTATTGGGCTGCATTGCAGAAATAGTTTATTGCTCGGTCTGTGCTTGCATTCAGGTATGCAACTACTTAATAACCAAGAAAATTTTTAAATGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.36

Weight (kDa)

5.68

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	212
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	242, 317, 528
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	294, 322
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	254
ApeKI	GCWGC	5 cut(s)	31, 40, 267, 270, 456
ApoI	RAATTY	3 cut(s)	242, 317, 528
BaeGI	GKGCMC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	43, 52, 254, 257, 443
BccI	CCATC	2 cut(s)	67, 89
BceAI	ACGGC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	254
BisI	GCNGC	5 cut(s)	32, 41, 268, 271, 457
BlsI	GCNGC	5 cut(s)	33, 42, 269, 272, 458
BmiI	GGNNCC	1 cut(s)	79
BmsI	GCATC	2 cut(s)	18, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	2 cut(s)	100, 421
Bse3DI	GCAATG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	100, 421
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	43, 52, 254, 257, 443
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	80, 160
Bsp143I	GATC	1 cut(s)	366
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	100, 421
BssMI	GATC	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	409, 493
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	369
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 40, 105, 348
BstNSI	RCATGY	2 cut(s)	145, 390
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	5 cut(s)	43, 52, 254, 257, 443
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	2 cut(s)	84, 217
BtsIMutI	CAGTG	3 cut(s)	84, 217, 255
Cac8I	GCNNGC	2 cut(s)	409, 493
Csp6I	GTAC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	4 cut(s)	142, 207, 339, 387
CviJI	RGCY	4 cut(s)	7, 99, 158, 456
CviKI_1	RGCY	4 cut(s)	7, 99, 158, 456
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
DraI	TTTAAA	1 cut(s)	535
Ecl136II	GAGCTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	4 cut(s)	145, 210, 342, 390
FatI	CATG	4 cut(s)	141, 206, 338, 386
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	32, 41, 268, 271, 457
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	5 cut(s)	32, 41, 268, 271, 457
GluI	GCNGC	5 cut(s)	32, 41, 268, 271, 457
Hin1II	CATG	4 cut(s)	145, 210, 342, 390
HinfI	GANTC	2 cut(s)	52, 334
HpyCH4IV	ACGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 40, 105, 348
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	4 cut(s)	145, 210, 342, 390
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	366
LpnPI	CCDG	5 cut(s)	81, 252, 402, 418, 485
Lsp1109I	GCAGC	5 cut(s)	43, 52, 254, 257, 443
LweI	GCATC	2 cut(s)	18, 360
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	144, 253
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	3 cut(s)	37, 282, 437
MhlI	GDGCHC	2 cut(s)	80, 160
MluCI	AATT	3 cut(s)	242, 317, 528
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	1 cut(s)	253
MseI	TTAA	2 cut(s)	515, 534
Mva1269I	GAATGC	1 cut(s)	495
MwoI	GCNNNNNNNGC	4 cut(s)	37, 40, 105, 348
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	4 cut(s)	145, 210, 342, 390
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	2 cut(s)	145, 390
PciI	ACATGT	1 cut(s)	141
PctI	GAATGC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	5 cut(s)	33, 42, 269, 272, 458
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	515, 534
SatI	GCNGC	5 cut(s)	32, 41, 268, 271, 457
Sau3AI	GATC	1 cut(s)	366
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	2 cut(s)	80, 160
SetI	ASST	6 cut(s)	160, 182, 264, 284, 504, 545
SfaNI	GCATC	2 cut(s)	18, 360
Sse9I	AATT	3 cut(s)	242, 317, 528
SsiI	CCGC	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	160
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	298
TaqII	GACCGA	1 cut(s)	472
TasI	AATT	3 cut(s)	242, 317, 528
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	515, 534
Tru9I	TTAA	2 cut(s)	515, 534
TscAI	CASTG	3 cut(s)	91, 217, 262
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	5 cut(s)	31, 40, 267, 270, 456
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	3 cut(s)	91, 217, 262
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	3 cut(s)	242, 317, 528
XceI	RCATGY	2 cut(s)	145, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.