pycom01g09660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001223
Physical Location & Seq
Forward (+)
10506745 .. 10508235
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09660.3

Sequence Viewer

Length: 378 bp
ATGGGGATTCAAGACCAGGTAGGGAAAATGCAGGTCCGTCAGGGGTACCGGAATCTATGGCACGCCGGTTTGATGGACACCGCGACCGCTGATACTTCCTATTTTTGCTTGGCATGTCTCTGTGCTCCGTGTGTTTCATACCTCCTACGCAAACGAGCTCTTTACAATGATATGTCAAGGTACACATGCTGTGCCGGATATATGCCATGCAGTGGAAAGTTTGGAGAAAGGCGCTGTCCTCAATTGTGTCTTGTTACGGAGGTCTGCTGCTGCTTTTCAAGTTCAGTTTCCTCGACACGCTTTCTAATCCAAGATGAGTTCAATATACAAACAACACCGTGCGACAACTGCATTATTGTAATCTCTCATCTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.03

Weight (kDa)

7.91

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 45
AccB7I CCANNNNNTGG 1 cut(s) 212
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 81, 87
AfaI GTAC 2 cut(s) 47, 182
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 3 cut(s) 11, 279, 322
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw21I GWGCWC 2 cut(s) 127, 160
Alw26I GTCTC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 267, 270
Asp718I GGTACC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 34
AvaII GGWCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 2 cut(s) 127, 160
BbvI GCAGC 2 cut(s) 254, 257
BccI CCATC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 235
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 2 cut(s) 268, 271
BlsI GCNGC 2 cut(s) 269, 272
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 65
BseBI CCWGG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 254, 257
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 127, 160
BsiSI CCGG 3 cut(s) 49, 66, 195
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 127, 160
BspACI CCGC 2 cut(s) 81, 87
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 63
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 117, 189
BstSCI CCNGG 1 cut(s) 15
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 254, 257
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 34
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 2 cut(s) 46, 181
CviAII CATG 3 cut(s) 114, 186, 207
CviJI RGCY 1 cut(s) 158
CviKI_1 RGCY 1 cut(s) 158
CviQI GTAC 2 cut(s) 46, 181
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 3 cut(s) 117, 189, 210
FaiI YATR 9 cut(s) 58, 115, 139, 173, 187, 201, 203, 208, 326
FatI CATG 3 cut(s) 113, 185, 206
Fnu4HI GCNGC 2 cut(s) 268, 271
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 268, 271
GlaI GCGC 1 cut(s) 233
GluI GCNGC 2 cut(s) 268, 271
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 3 cut(s) 49, 66, 195
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 117, 189, 210
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 2 cut(s) 7, 52
HpaII CCGG 3 cut(s) 49, 66, 195
Hpy166II GTNNAC 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 11, 375
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 31, 210, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
Hsp92II CATG 3 cut(s) 117, 189, 210
HspAI GCGC 1 cut(s) 232
KpnI GGTACC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 7 cut(s) 2, 17, 26, 29, 62, 79, 208
Lsp1109I GCAGC 2 cut(s) 254, 257
MabI ACCWGGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 253
MfeI CAATTG 1 cut(s) 242
MhlI GDGCHC 2 cut(s) 127, 160
MluCI AATT 1 cut(s) 242
MnlI CCTC 4 cut(s) 152, 249, 253, 301
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 3 cut(s) 49, 66, 195
MspR9I CCNGG 1 cut(s) 17
MunI CAATTG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 348
NlaIII CATG 3 cut(s) 117, 189, 210
NlaIV GGNNCC 1 cut(s) 47
NspI RCATGY 2 cut(s) 117, 189
PfeI GAWTC 2 cut(s) 7, 52
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 2 cut(s) 269, 272
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 34
RsaI GTAC 2 cut(s) 47, 182
RsaNI GTAC 2 cut(s) 46, 181
SacI GAGCTC 1 cut(s) 160
SatI GCNGC 2 cut(s) 268, 271
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 127, 160
SetI ASST 6 cut(s) 21, 36, 144, 160, 182, 264
SexAI ACCWGGT 1 cut(s) 15
SinI GGWCC 1 cut(s) 34
Sse9I AATT 1 cut(s) 242
SsiI CCGC 2 cut(s) 81, 87
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 293
TasI AATT 1 cut(s) 242
TfiI GAWTC 2 cut(s) 7, 52
TscAI CASTG 1 cut(s) 217
TseI GCWGC 2 cut(s) 267, 270
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 3 cut(s) 26, 117, 272
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 34
XceI RCATGY 2 cut(s) 117, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.