Prupe.2G173900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001223
Physical Location & Seq
Forward (+)
22013686 .. 22015908
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G173900.2

Sequence Viewer

Length: 627 bp
ATGGGGATGCAACAGCAGGTGGAGAAAATGCAGCTCCGGCAGGGGTTTCAAAATCTGTGGCATACCGATTTGATGGGCACTGTGACCGCCGATACTCCATATTGTTGCTTTGCGTGTTTCTGTGGTCCGTGTGTTTCTTACCTGCTACGCAAGCAAGCTCTTTATAATGACATGTCAAGGTACAAATGCTGTGCCGGATTTATGCCGTGCAGTGGAAGATTCGGAGAAAGTCACTGCCCTGAATTGTGTCTAGGCACTGAGGTTTGCTTCTGCTTTGGAACTTCGGTTTCCTCAACACGCTTTCTTATACAAGATGAACTCAACATAAAAACAACACCCTGCGATAACTGCATGATTGGATTTATGCTCGTCCTCAGCCAAATTGCATGCATATTCTCCTTGATTGCTTGCATAACTGGAAATGAAGAGCTGGGTGAGCTTTCGAATGCCTTGAGCTGCATTGCCGACACGGTCTTTTGCTCGGTCTGTGCTTGCATCCAGACACAGCACCATTTTGAACTGAACAAAAGAGATGGAAAGCTTCCGCCGGCGGTTTTGGGAGTGCCTCAGGTGCAGCAGATGTCGCGTACTGATGAGAAAAATCCACCACAAACCGGATATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.12

Weight (kDa)

5.52

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AarI CACCTGC 1 cut(s) 7
Acc36I ACCTGC 2 cut(s) 7, 150
AccII CGCG 1 cut(s) 586
AciI CCGC 3 cut(s) 87, 545, 551
AfaI GTAC 2 cut(s) 182, 589
AfiI CCNNNNNNNGG 2 cut(s) 212, 614
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 50, 518
AluBI AGCT 6 cut(s) 34, 158, 430, 439, 456, 541
AluI AGCT 6 cut(s) 34, 158, 430, 439, 456, 541
ApeKI GCWGC 3 cut(s) 31, 456, 574
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 446
AsuII TTCGAA 1 cut(s) 443
AvaII GGWCC 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 567
BaeGI GKGCMC 1 cut(s) 80
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 3 cut(s) 43, 443, 586
BccI CCATC 2 cut(s) 67, 527
BceAI ACGGC 1 cut(s) 190
BfaI CTAG 1 cut(s) 251
BfuAI ACCTGC 2 cut(s) 7, 150
BisI GCNGC 3 cut(s) 32, 457, 575
BlsI GCNGC 3 cut(s) 33, 458, 576
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmsI GCATC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 472
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 614
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 1 cut(s) 421
Bse21I CCTNAGG 1 cut(s) 567
Bse3DI GCAATG 1 cut(s) 459
BseGI GGATG 2 cut(s) 12, 495
BseLI CCNNNNNNNGG 2 cut(s) 212, 614
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 3 cut(s) 249, 388, 581
BseNI ACTGG 1 cut(s) 421
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 3 cut(s) 43, 443, 586
BseYI CCCAGC 1 cut(s) 430
BsgI GTGCAG 2 cut(s) 229, 593
Bsh1236I CGCG 1 cut(s) 586
BsiSI CCGG 4 cut(s) 37, 195, 548, 615
BslI CCNNNNNNNGG 2 cut(s) 212, 614
BsmI GAATGC 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 80
BspACI CCGC 3 cut(s) 87, 545, 551
BspCNI CTCAG 3 cut(s) 250, 387, 580
BspFNI CGCG 1 cut(s) 586
BspMI ACCTGC 2 cut(s) 7, 150
BspQI GCTCTTC 1 cut(s) 420
BspT104I TTCGAA 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 1 cut(s) 421
BssAI RCCGGY 1 cut(s) 547
Bst4CI ACNGT 2 cut(s) 82, 472
Bst6I CTCTTC 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 443
BstC8I GCNNGC 6 cut(s) 152, 156, 388, 409, 493, 549
BstDEI CTNAG 3 cut(s) 258, 374, 567
BstF5I GGATG 2 cut(s) 12, 495
BstFNI CGCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 6 cut(s) 37, 151, 348, 436, 571, 583
BstNSI RCATGY 2 cut(s) 175, 390
BstSLI GKGCMC 1 cut(s) 80
BstUI CGCG 1 cut(s) 586
BstV1I GCAGC 3 cut(s) 43, 443, 586
Bsu36I CCTNAGG 1 cut(s) 567
BtsCI GGATG 2 cut(s) 12, 495
BtsI GCAGTG 2 cut(s) 217, 232
BtsIMutI CAGTG 4 cut(s) 78, 217, 232, 255
BveI ACCTGC 2 cut(s) 7, 150
Cac8I GCNNGC 6 cut(s) 152, 156, 388, 409, 493, 549
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 181, 588
CspCI CAANNNNNGTGG 2 cut(s) 38, 73
CviAII CATG 3 cut(s) 172, 352, 387
CviJI RGCY 7 cut(s) 34, 158, 378, 430, 439, 456, 541
CviKI_1 RGCY 7 cut(s) 34, 158, 378, 430, 439, 456, 541
CviQI GTAC 2 cut(s) 181, 588
DdeI CTNAG 3 cut(s) 258, 374, 567
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EciI GGCGGA 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 567
EcoT22I ATGCAT 1 cut(s) 392
FaeI CATG 3 cut(s) 175, 355, 390
FatI CATG 3 cut(s) 171, 351, 386
Fnu4HI GCNGC 3 cut(s) 32, 457, 575
FokI GGATG 2 cut(s) 19, 482
Fsp4HI GCNGC 3 cut(s) 32, 457, 575
FspBI CTAG 1 cut(s) 251
GluI GCNGC 3 cut(s) 32, 457, 575
GsaI CCCAGC 1 cut(s) 434
HapII CCGG 4 cut(s) 37, 195, 548, 615
Hin1II CATG 3 cut(s) 175, 355, 390
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 1 cut(s) 219
HpaII CCGG 4 cut(s) 37, 195, 548, 615
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 1 cut(s) 499
HpyCH4III ACNGT 2 cut(s) 82, 472
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 151, 348, 436, 571, 583
HpyF3I CTNAG 3 cut(s) 258, 374, 567
Hsp92II CATG 3 cut(s) 175, 355, 390
KroI GCCGGC 1 cut(s) 547
KroNI GCCGGC 1 cut(s) 549
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 3 cut(s) 43, 443, 586
LweI GCATC 1 cut(s) 504
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 82, 230
MboII GAAGA 2 cut(s) 228, 437
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 2 cut(s) 242, 381
MnlI CCTC 4 cut(s) 253, 301, 383, 576
Mph1103I ATGCAT 1 cut(s) 392
MreI CGCCGGCG 1 cut(s) 547
MroNI GCCGGC 1 cut(s) 547
MseI TTAA 1 cut(s) 625
MspI CCGG 4 cut(s) 37, 195, 548, 615
Mva1269I GAATGC 1 cut(s) 451
MvnI CGCG 1 cut(s) 586
MwoI GCNNNNNNNGC 6 cut(s) 37, 151, 348, 436, 571, 583
NaeI GCCGGC 1 cut(s) 549
NgoMIV GCCGGC 1 cut(s) 547
NlaIII CATG 3 cut(s) 175, 355, 390
NmuCI GTSAC 2 cut(s) 82, 230
NsiI ATGCAT 1 cut(s) 392
NspI RCATGY 2 cut(s) 175, 390
NspV TTCGAA 1 cut(s) 443
PaeI GCATGC 1 cut(s) 390
PaqCI CACCTGC 1 cut(s) 7
PciI ACATGT 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 420
PctI GAATGC 1 cut(s) 451
PdiI GCCGGC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 470
PkrI GCNGC 3 cut(s) 33, 458, 576
PscI ACATGT 1 cut(s) 171
PsiI TTATAA 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 125
PsyI GACNNNGTC 1 cut(s) 470
RsaI GTAC 2 cut(s) 182, 589
RsaNI GTAC 2 cut(s) 181, 588
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 625
SatI GCNGC 3 cut(s) 32, 457, 575
Sau96I GGNCC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 80
SfaNI GCATC 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 443
SgrAI CRCCGGYG 1 cut(s) 547
SinI GGWCC 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
SphI GCATGC 1 cut(s) 390
Sse9I AATT 2 cut(s) 242, 381
SsiI CCGC 3 cut(s) 87, 545, 551
SspMI CTAG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 82, 472
TaqI TCGA 1 cut(s) 443
TaqII GACCGA 1 cut(s) 472
TasI AATT 2 cut(s) 242, 381
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 1 cut(s) 625
Tru9I TTAA 1 cut(s) 625
TscAI CASTG 4 cut(s) 85, 217, 239, 262
TseFI GTSAC 2 cut(s) 82, 230
TseI GCWGC 3 cut(s) 31, 456, 574
Tsp45I GTSAC 2 cut(s) 82, 230
TspDTI ATGAA 2 cut(s) 330, 438
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 4 cut(s) 85, 217, 239, 262
Tth111I GACNNNGTC 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 2 cut(s) 175, 390
XspI CTAG 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.