Prupe.5G104200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001223
Physical Location & Seq
Forward (+)
11096064 .. 11100320
4257 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G104200.1

Sequence Viewer

Length: 750 bp
ATGCCGTCGCAGGAGTACATGGACAAGATGCAGGGGCGCCAGAACTATCGAAATCTCTGGCACTCTGACCTCATGAGCACCATTCAGGCTGACACTCCCTATTGCTGCTTTGCGGCTTTTTGTGCGCCATGTGCATCATACTTGCTCCGCAAACGGGCTCTCTATAATGACATGTCAAGATATGTATGCTGTGCTGGTTATATGCCCTGTAGCGGTAGGTGTGGGGAAAGTAAATGCCCTGAATTTTGCCTAGCGACCGAGGTTTTCCTGTGCTTTGGGAATTCAGTGGCCTCAACCCGCTTTTTGTTGCAAGATGAATTTAATATACAGACAACGCAATGTGATAATTGCATTATTGGTTTCATGTTCTGTCTACAACAAATTGCGTGCATTTTTTCCATTGTTGCAATGATTGTTGGAAGTGAAGAAATCTCAGAGGCATCTCAGTTACTGAACTGTTTGGCTGACCTGGTGTATTGCACGGTCTGTGCATGTATGCAGACCCAACACAAGATCGAAATGGACAAACGTGACGGCAAGTTTGGGCCACAACCTATGGCAGTGCCTCAATTCCAGCAGATGTCTCGCATTGATCAGCAAGTTCCTCCCTCAGTTGGGTATCCACCTCAACCGGCATATCCACCTCAGCCGGCGTATGGGCAACCTTATGGCTATCCACCTCCCCAGCAGGCTCAAGGCTATCCACCAGCTGGTTATCCTCCAAGTGGCTATCCACATTCTGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.83

Weight (kDa)

5.51

Isoelectric Point (pI)

71.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AccB7I CCANNNNNTGG 2 cut(s) 710, 740
AccI GTMKAC 1 cut(s) 373
AciI CCGC 4 cut(s) 113, 148, 213, 298
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 3 cut(s) 242, 280, 317
AcyI GRCGYC 1 cut(s) 37
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 8 cut(s) 154, 212, 614, 615, 656, 710, 725, 740
AflIII ACRYGT 1 cut(s) 171
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 1 cut(s) 710
AluI AGCT 1 cut(s) 710
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 588
AlwNI CAGNNNCTG 1 cut(s) 451
AoxI GGCC 3 cut(s) 288, 545, 742
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 3 cut(s) 242, 280, 317
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AspLEI GCGC 2 cut(s) 39, 127
AspS9I GGNCC 1 cut(s) 545
BalI TGGCCA 1 cut(s) 744
BanI GGYRCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 80
BbvCI CCTCAGC 1 cut(s) 645
BbvI GCAGC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 550
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 1 cut(s) 470
BciVI GTATCC 1 cut(s) 630
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 40
BfuI GTATCC 1 cut(s) 630
BisI GCNGC 2 cut(s) 106, 114
BlsI GCNGC 2 cut(s) 107, 115
Bme1390I CCNGG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 3 cut(s) 18, 143, 449
Bpu10I CCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 8 cut(s) 154, 212, 614, 615, 656, 710, 725, 740
Bse118I RCCGGY 2 cut(s) 631, 649
Bse3DI GCAATG 2 cut(s) 344, 414
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 1 cut(s) 258
BseLI CCNNNNNNNGG 8 cut(s) 154, 212, 614, 615, 656, 710, 725, 740
BseMI GCAATG 2 cut(s) 344, 414
BseMII CTCAG 4 cut(s) 447, 458, 624, 659
BseXI GCAGC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 684
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 3 cut(s) 290, 547, 744
BshNI GGYRCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 2 cut(s) 632, 650
BslI CCNNNNNNNGG 8 cut(s) 154, 212, 614, 615, 656, 710, 725, 740
BsmAI GTCTC 1 cut(s) 588
BsnI GGCC 3 cut(s) 290, 547, 744
Bsp1286I GDGCHC 2 cut(s) 80, 160
Bsp143I GATC 2 cut(s) 513, 592
BspACI CCGC 4 cut(s) 113, 148, 213, 298
BspANI GGCC 3 cut(s) 290, 547, 744
BspCNI CTCAG 4 cut(s) 446, 457, 623, 658
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 36
BsrDI GCAATG 2 cut(s) 344, 414
BsrFI RCCGGY 2 cut(s) 631, 649
BssAI RCCGGY 2 cut(s) 631, 649
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 513, 592
BssNI GRCGYC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 458, 484
BstACI GRCGYC 1 cut(s) 37
BstC8I GCNNGC 3 cut(s) 388, 651, 690
BstDEI CTNAG 4 cut(s) 433, 444, 610, 645
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 2 cut(s) 39, 127
BstKTI GATC 2 cut(s) 516, 595
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 2 cut(s) 513, 592
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 2 cut(s) 122, 131
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 2 cut(s) 175, 495
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 92
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 3 cut(s) 290, 547, 744
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 291, 567
Cac8I GCNNGC 3 cut(s) 388, 651, 690
CaiI CAGNNNCTG 1 cut(s) 451
CciI TCATGA 1 cut(s) 72
CfoI GCGC 2 cut(s) 39, 127
Cfr10I RCCGGY 2 cut(s) 631, 649
Cfr13I GGNCC 1 cut(s) 545
CsiI ACCWGGT 1 cut(s) 468
Csp6I GTAC 1 cut(s) 16
CviAII CATG 6 cut(s) 19, 73, 129, 172, 364, 492
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 4 cut(s) 433, 444, 610, 645
DinI GGCGCC 1 cut(s) 38
DpnI GATC 2 cut(s) 515, 594
DpnII GATC 2 cut(s) 513, 592
EaeI YGGCCR 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 38
EheI GGCGCC 1 cut(s) 38
FaeI CATG 6 cut(s) 22, 76, 132, 175, 367, 495
FatI CATG 6 cut(s) 18, 72, 128, 171, 363, 491
FauI CCCGC 1 cut(s) 305
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 106, 114
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 106, 114
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 38, 126
GluI GCNGC 2 cut(s) 106, 114
GsaI CCCAGC 1 cut(s) 688
HaeII RGCGCY 1 cut(s) 40
HaeIII GGCC 3 cut(s) 290, 547, 744
HapII CCGG 2 cut(s) 632, 650
HhaI GCGC 2 cut(s) 39, 127
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 6 cut(s) 22, 76, 132, 175, 367, 495
Hin6I GCGC 2 cut(s) 37, 125
HinP1I GCGC 2 cut(s) 37, 125
HpaII CCGG 2 cut(s) 632, 650
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 2 cut(s) 67, 436
Hpy188III TCNNGA 2 cut(s) 73, 177
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 458, 484
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 9 cut(s) 31, 134, 310, 351, 390, 407, 480, 491, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 131
HpyF3I CTNAG 4 cut(s) 433, 444, 610, 645
HpySE526I ACGT 1 cut(s) 529
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 6 cut(s) 22, 76, 132, 175, 367, 495
HspAI GCGC 2 cut(s) 37, 125
KasI GGCGCC 1 cut(s) 36
KroI GCCGGC 1 cut(s) 649
KroNI GCCGGC 1 cut(s) 651
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 2 cut(s) 513, 592
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 3 cut(s) 18, 143, 449
MabI ACCWGGT 1 cut(s) 468
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 2 cut(s) 447, 530
MalI GATC 2 cut(s) 515, 594
MboI GATC 2 cut(s) 513, 592
MboII GAAGA 1 cut(s) 437
MhlI GDGCHC 2 cut(s) 80, 160
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 6 cut(s) 242, 280, 317, 346, 381, 569
MluNI TGGCCA 1 cut(s) 744
Mly113I GGCGCC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 397
Mox20I TGGCCA 1 cut(s) 744
MroNI GCCGGC 1 cut(s) 649
MscI TGGCCA 1 cut(s) 744
MseI TTAA 2 cut(s) 321, 748
Msp20I TGGCCA 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 2 cut(s) 632, 650
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 2 cut(s) 122, 131
NaeI GCCGGC 1 cut(s) 651
NarI GGCGCC 1 cut(s) 37
NdeII GATC 2 cut(s) 513, 592
NgoMIV GCCGGC 1 cut(s) 649
NlaIII CATG 6 cut(s) 22, 76, 132, 175, 367, 495
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 530
NspI RCATGY 2 cut(s) 175, 495
PagI TCATGA 1 cut(s) 72
PciI ACATGT 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 651
PflMI CCANNNNNTGG 2 cut(s) 710, 740
PkrI GCNGC 2 cut(s) 107, 115
PluTI GGCGCC 1 cut(s) 40
PscI ACATGT 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 468
PspFI CCCAGC 1 cut(s) 684
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 545
PstNI CAGNNNCTG 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 321, 748
SatI GCNGC 2 cut(s) 106, 114
Sau3AI GATC 2 cut(s) 513, 592
Sau96I GGNCC 1 cut(s) 545
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 2 cut(s) 80, 160
SexAI ACCWGGT 1 cut(s) 468
SfaNI GCATC 3 cut(s) 18, 143, 449
SfcI CTRYAG 1 cut(s) 208
SfoI GGCGCC 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
Sse9I AATT 6 cut(s) 242, 280, 317, 346, 381, 569
SsiI CCGC 4 cut(s) 113, 148, 213, 298
SspDI GGCGCC 1 cut(s) 36
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 458, 484
TaiI ACGT 1 cut(s) 532
TaqI TCGA 2 cut(s) 49, 516
TaqII GACCGA 1 cut(s) 272
TasI AATT 6 cut(s) 242, 280, 317, 346, 381, 569
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 321, 748
Tru9I TTAA 2 cut(s) 321, 748
TscAI CASTG 2 cut(s) 291, 567
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 2 cut(s) 330, 352
TspRI CASTG 2 cut(s) 291, 567
Van91I CCANNNNNTGG 2 cut(s) 710, 740
XapI RAATTY 3 cut(s) 242, 280, 317
XceI RCATGY 2 cut(s) 175, 495
XmiI GTMKAC 1 cut(s) 373
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.