MD01G1067500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0001223
Physical Location & Seq
Forward (+)
17074344 .. 17077622
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1067500.v1.1.491

Sequence Viewer

Length: 192 bp
ATGGCGATGCAAAAGCAGGTGGATAAAATGCAGCTCCGGAAGGATTACAGAAATCTATGGCATACCGATTGGATGGGCACGGTGACTGCCGATTGTCCATTTTTCTCAACACACTTTCTAATACAAGATGAACTAAATATTCAAACAATACCCAATTGCATGATTGTAATATATGTATTGTTAAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.58

Weight (kDa)

6.69

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 7
Acc36I ACCTGC 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 36
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Aor13HI TCCGGA 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 7
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 36
BseAI TCCGGA 1 cut(s) 36
BseGI GGATG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 80
Bsp13I TCCGGA 1 cut(s) 36
BspEI TCCGGA 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 82
BstF5I GGATG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 7
CviAII CATG 1 cut(s) 160
CviJI RGCY 1 cut(s) 34
CviKI_1 RGCY 1 cut(s) 34
FaeI CATG 1 cut(s) 163
FaiI YATR 5 cut(s) 58, 63, 161, 172, 174
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HapII CCGG 1 cut(s) 37
Hin1II CATG 1 cut(s) 163
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 10, 31, 159
Hsp92II CATG 1 cut(s) 163
Kpn2I TCCGGA 1 cut(s) 36
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 2 cut(s) 2, 50
Lsp1109I GCAGC 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 82
MfeI CAATTG 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 1 cut(s) 154
MroI TCCGGA 1 cut(s) 36
MseI TTAA 1 cut(s) 182
MspI CCGG 1 cut(s) 37
MunI CAATTG 1 cut(s) 154
NlaIII CATG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 82
PaqCI CACCTGC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 80
SetI ASST 2 cut(s) 21, 36
SgeI CNNG 5 cut(s) 29, 49, 91, 137, 172
Sse9I AATT 1 cut(s) 154
SspI AATATT 1 cut(s) 139
TaaI ACNGT 1 cut(s) 82
TasI AATT 1 cut(s) 154
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.