pycom14g10340

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
12956594 .. 12957176
583 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g10340.1

Sequence Viewer

Length: 384 bp
ATGATTGTTGGAAGTGAAGAAATCTCAGAGGCATCTCAGTTGTTGAATTGTTTGGCTGACTTGGTGTACTGCACGGTCTGTGCATGTATGCAGACACAGCACAAGATTGAAATGGACAAACGAGATGGCAAGTTTGGACCGCAACCTATGGCAGTTCCCCAGTTTCAGCAGATGTCTCGCATTGATCAGCAAGTTCCTCCCACAGTTGGATATCCACCTCAACCAGCATATCCAGCTCAACCAGCTTACGGTCAGCCCTATGGTTATCCACCTGCTCCACAAGCTCAAGGCTACCCACCAGCTCCACAAGCTCAAGGCTACCCACCAGCCAGTTATCCTCCAAGCGGCTATCCACCCAGCGGTTATCCACCTTCCGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.7

Weight (kDa)

5.04

Isoelectric Point (pI)

84.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 280
AciI CCGC 3 cut(s) 140, 345, 360
AcoI YGGCCR 1 cut(s) 376
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 5 cut(s) 206, 248, 344, 359, 374
AgsI TTSAA 2 cut(s) 46, 110
AluBI AGCT 5 cut(s) 236, 245, 284, 302, 311
AluI AGCT 5 cut(s) 236, 245, 284, 302, 311
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 137
AvaII GGWCC 1 cut(s) 137
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 280
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 154
BpuEI CTTGAG 2 cut(s) 270, 297
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 248, 344, 359, 374
Bse1I ACTGG 2 cut(s) 160, 330
BseLI CCNNNNNNNGG 5 cut(s) 206, 248, 344, 359, 374
BseMII CTCAG 2 cut(s) 39, 50
BseNI ACTGG 2 cut(s) 160, 330
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 375
BslI CCNNNNNNNGG 5 cut(s) 206, 248, 344, 359, 374
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 378
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 3 cut(s) 140, 345, 360
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 38, 49
BspMI ACCTGC 1 cut(s) 280
BsrI ACTGG 2 cut(s) 160, 330
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 76, 205, 251
BstDEI CTNAG 2 cut(s) 25, 36
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 5 cut(s) 97, 233, 242, 281, 308
BstNSI RCATGY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 378
BveI ACCTGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 84
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 25, 36
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 376
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 137
EcoRV GATATC 1 cut(s) 212
FaeI CATG 1 cut(s) 87
FaiI YATR 5 cut(s) 85, 89, 149, 229, 261
FatI CATG 1 cut(s) 83
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 346
Fsp4HI GCNGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 346
GsaI CCCAGC 1 cut(s) 360
HaeIII GGCC 1 cut(s) 378
HapII CCGG 1 cut(s) 375
Hin1II CATG 1 cut(s) 87
HpaII CCGG 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 3 cut(s) 76, 205, 251
HpyCH4V TGCA 3 cut(s) 72, 83, 91
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 233, 242, 281, 308
HpyF3I CTNAG 2 cut(s) 25, 36
Hsp92II CATG 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 2 cut(s) 280, 307
LpnPI CCDG 9 cut(s) 173, 237, 246, 255, 285, 312, 339, 343, 370
LweI GCATC 1 cut(s) 41
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 29
MluCI AATT 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 4 cut(s) 22, 207, 228, 348
MseI TTAA 1 cut(s) 382
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 1 cut(s) 375
MwoI GCNNNNNNNGC 5 cut(s) 97, 233, 242, 281, 308
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 87
NspI RCATGY 1 cut(s) 87
PaqCI CACCTGC 1 cut(s) 280
PkrI GCNGC 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 137
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 137
SetI ASST 9 cut(s) 148, 220, 238, 247, 274, 286, 304, 313, 373
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 137
SmlI CTYRAG 2 cut(s) 285, 312
SmoI CTYRAG 2 cut(s) 285, 312
Sse9I AATT 1 cut(s) 46
SsiI CCGC 3 cut(s) 140, 345, 360
TaaI ACNGT 3 cut(s) 76, 205, 251
TasI AATT 1 cut(s) 46
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 348
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 137
XceI RCATGY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.