Rh7DG163600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001223
Physical Location & Seq
Reverse (-)
14567481 .. 14569611
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG163600.1

Sequence Viewer

Length: 582 bp
ATGTCAAGATATGTATGCTGTGCTGGTTATATGCCCTGCAGTGGTAGATGTGGGGAAAGTAAATGCCCTGAATTTTGCCTGGCCACTGAGGTGTTTTTGTGCTTTGGGAATTCCGTGGCTTCAACTCGCTTTCTGTTGCAAGATGAATTTAATATTCAGACCACGCAGTGTGATAATTGCATCATTGGTTTCATGGTCTGCCTACAACAAGTTGCATGTATTTTCTCCATAGTTGCGATGCTAGTTGGAAGCGAAGAAATCTCAGAGGCGTCTCAGTTATTGAACTGTTTGGCTGACGTGGTGTACTGCAGTGTGTGTGCATGTATGCAGACACAACACAAGATCGAAATGGACAAGCGTGATGGCATGTTTGGACCCCAACCAATGGCAGTACCTCAGTTTCAGCAGATGTCTCGCATTGATCAACAAATTCCTCCCAATGTCGGATATCCTCCTCAACCAGTATACGGGCAACCCTATGGGTATCCACCTCCTCCTCAGGCTCAAGGCTATCCACCTCAGCAGGCTCAAGGCTATCCTCCAGCTGGATACCCTCCACCTGGTTATCCACCTTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.22

Weight (kDa)

4.7

Isoelectric Point (pI)

71.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 385
AccI GTMKAC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 4 cut(s) 71, 109, 146, 429
AcyI GRCGYC 1 cut(s) 269
AdeI CACNNNGTG 1 cut(s) 168
AfaI GTAC 2 cut(s) 305, 393
AfiI CCNNNNNNNGG 6 cut(s) 41, 385, 443, 467, 545, 560
AgsI TTSAA 2 cut(s) 123, 283
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 2 cut(s) 78, 559
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 1 cut(s) 545
AluI AGCT 1 cut(s) 545
Alw26I GTCTC 2 cut(s) 276, 417
AoxI GGCC 1 cut(s) 81
ApoI RAATTY 4 cut(s) 71, 109, 146, 429
AspS9I GGNCC 1 cut(s) 374
AvaII GGWCC 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 498
BalI TGGCCA 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 519
BccI CCATC 1 cut(s) 356
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 2 cut(s) 80, 561
BciVI GTATCC 2 cut(s) 495, 542
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 276, 417
BfaI CTAG 2 cut(s) 242, 576
BfmI CTRYAG 2 cut(s) 37, 307
BfuI GTATCC 2 cut(s) 495, 542
Bme1390I CCNGG 2 cut(s) 80, 561
Bme18I GGWCC 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 2 cut(s) 80, 561
BmsI GCATC 2 cut(s) 189, 228
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 489, 513
BsaHI GRCGYC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 6 cut(s) 41, 385, 443, 467, 545, 560
Bse1I ACTGG 1 cut(s) 461
Bse21I CCTNAGG 1 cut(s) 498
BseBI CCWGG 2 cut(s) 80, 561
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 6 cut(s) 41, 385, 443, 467, 545, 560
BseMII CTCAG 6 cut(s) 78, 276, 287, 410, 512, 533
BseNI ACTGG 1 cut(s) 461
BseRI GAGGAG 3 cut(s) 444, 483, 486
BshFI GGCC 1 cut(s) 83
BslI CCNNNNNNNGG 6 cut(s) 41, 385, 443, 467, 545, 560
BsmAI GTCTC 2 cut(s) 276, 417
BsmBI CGTCTC 1 cut(s) 276
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 342, 421
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 6 cut(s) 79, 275, 286, 409, 511, 532
BspLI GGNNCC 1 cut(s) 376
BspMAI CTGCAG 2 cut(s) 41, 311
BsrI ACTGG 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 342, 421
BssNAI GTATAC 1 cut(s) 466
BssNI GRCGYC 1 cut(s) 269
Bst1107I GTATAC 1 cut(s) 466
Bst2UI CCWGG 2 cut(s) 80, 561
Bst4CI ACNGT 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 6 cut(s) 87, 262, 273, 396, 498, 519
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 2 cut(s) 345, 424
BstMAI GTCTC 2 cut(s) 276, 417
BstMBI GATC 2 cut(s) 342, 421
BstNI CCWGG 2 cut(s) 80, 561
BstNSI RCATGY 3 cut(s) 219, 324, 370
BstSCI CCNGG 2 cut(s) 78, 559
BstSFI CTRYAG 2 cut(s) 37, 307
BstZ17I GTATAC 1 cut(s) 466
Bsu36I CCTNAGG 1 cut(s) 498
BsuI GTATCC 2 cut(s) 495, 542
BsuRI GGCC 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 251
BtrI CACGTC 1 cut(s) 298
BtsI GCAGTG 3 cut(s) 46, 173, 316
BtsIMutI CAGTG 4 cut(s) 46, 84, 173, 316
Cac8I GCNNGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 374
CseI GACGC 1 cut(s) 258
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 2 cut(s) 304, 392
CviAII CATG 4 cut(s) 193, 216, 321, 367
CviJI RGCY 8 cut(s) 83, 119, 293, 503, 510, 527, 534, 545
CviKI_1 RGCY 8 cut(s) 83, 119, 293, 503, 510, 527, 534, 545
CviQI GTAC 2 cut(s) 304, 392
DdeI CTNAG 6 cut(s) 87, 262, 273, 396, 498, 519
DpnI GATC 2 cut(s) 344, 423
DpnII GATC 2 cut(s) 342, 421
DraIII CACNNNGTG 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 81
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 374
Eco81I CCTNAGG 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 78, 559
EcoRV GATATC 1 cut(s) 449
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 4 cut(s) 196, 219, 324, 370
FatI CATG 4 cut(s) 192, 215, 320, 366
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 465
FspBI CTAG 2 cut(s) 242, 576
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 1 cut(s) 83
HgaI GACGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 4 cut(s) 196, 219, 324, 370
Hpy166II GTNNAC 2 cut(s) 304, 466
Hpy188I TCNGA 3 cut(s) 159, 265, 446
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 2 cut(s) 304, 466
HpyAV CCTTC 1 cut(s) 582
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 7 cut(s) 39, 139, 180, 215, 309, 320, 328
HpyF3I CTNAG 6 cut(s) 87, 262, 273, 396, 498, 519
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 4 cut(s) 196, 219, 324, 370
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 2 cut(s) 342, 421
LweI GCATC 2 cut(s) 189, 228
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 2 cut(s) 242, 576
MaeII ACGT 1 cut(s) 297
MalI GATC 2 cut(s) 344, 423
MboI GATC 2 cut(s) 342, 421
MboII GAAGA 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 5 cut(s) 71, 109, 146, 175, 429
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 226, 424
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 545
MspR9I CCNGG 2 cut(s) 80, 561
MvaI CCWGG 2 cut(s) 80, 561
NdeII GATC 2 cut(s) 342, 421
NlaIII CATG 4 cut(s) 196, 219, 324, 370
NlaIV GGNNCC 1 cut(s) 376
NspI RCATGY 3 cut(s) 219, 324, 370
OliI CACNNNNGTG 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 78, 559
PspGI CCWGG 2 cut(s) 78, 559
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 374
PstI CTGCAG 2 cut(s) 41, 311
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 305, 393
RsaNI GTAC 2 cut(s) 304, 392
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 2 cut(s) 342, 421
Sau96I GGNCC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 80, 561
SetI ASST 9 cut(s) 93, 300, 397, 493, 520, 547, 562, 574, 581
SexAI ACCWGGT 1 cut(s) 559
SfaNI GCATC 2 cut(s) 189, 228
SfcI CTRYAG 2 cut(s) 37, 307
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 504, 528
SmoI CTYRAG 2 cut(s) 504, 528
Sse9I AATT 5 cut(s) 71, 109, 146, 175, 429
SspI AATATT 1 cut(s) 154
SspMI CTAG 2 cut(s) 242, 576
StyD4I CCNGG 2 cut(s) 78, 559
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 345
TasI AATT 5 cut(s) 71, 109, 146, 175, 429
TatI WGTACW 1 cut(s) 303
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 4 cut(s) 46, 91, 173, 316
TspDTI ATGAA 2 cut(s) 159, 181
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 4 cut(s) 46, 91, 173, 316
Van91I CCANNNNNTGG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 4 cut(s) 71, 109, 146, 429
XceI RCATGY 3 cut(s) 219, 324, 370
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 2 cut(s) 242, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.