Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Forward (+)

10508319 .. 10509320

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCTCTGCCTCAGCCAAATTGCGTGTATATGCTCCTTGATTGCTTGCTTAACTGGAAGCGAGGAGCTCTCAGATATTTCCAGTGTGTTGAACTGTATAGCTGACACGGTGTTTTGCTCGGTCTGTGCTTGCATGCAGACCCAGCACAAGATTGAACTGGACAAAAGGGATGGCAAGCTTGGTCCGCCGCTGGTGATGGCAGTTCCTCCGATGCAGCAGATGTCACGGAATGATCAACCAGTTTCTCCTCATGCCGGATATCAACATCCACACGCTGGATGTTCACCTCCACCAACAGGATATCCAAATCAACCGGCAGGATATCCAAATCAACCAGCGGGATATCCACCGGCAGGATATCCAAACCAACATGCGGGGTATCCAAATCAACATGCAGGATATGGACATCAGCCAGTAGGATATATACATCCACCGGCATATGGGCAACCATTATATCCTCCAGGGCCTAAACCTCACGCGTATCCTCCTCCTCCAGAGTCAGGAGAATTTCCTTACAACCTCGGACCTCCTCCTCCACCCCCTGGTTATACTCCAGAATCTGCATCTGCTCCTCCGTATCCTCCAGGACCTCCACCAATTTCTCCTCTCGACGGTTATCCTCAACCTCCTCCTCCTAGCCGCACCCATCCCGATCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

23.39

Weight (kDa)

6.0

Isoelectric Point (pI)

70.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	275, 542
AccII	CGCG	1 cut(s)	479
AciI	CCGC	5 cut(s)	185, 188, 338, 374, 640
AclWI	GGATC	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	506
AfiI	CCNNNNNNNGG	9 cut(s)	254, 275, 296, 353, 373, 440, 500, 542, 611
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	91, 155
AjnI	CCWGG	3 cut(s)	460, 541, 583
AluBI	AGCT	3 cut(s)	67, 101, 178
AluI	AGCT	3 cut(s)	67, 101, 178
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	647
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	506
AspS9I	GGNCC	4 cut(s)	182, 464, 524, 587
AsuHPI	GGTGA	2 cut(s)	205, 276
AvaII	GGWCC	3 cut(s)	182, 524, 587
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	164, 190, 654
BciT130I	CCWGG	3 cut(s)	462, 543, 585
BciVI	GTATCC	3 cut(s)	390, 492, 588
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	1 cut(s)	636
BfuI	GTATCC	3 cut(s)	390, 492, 588
BisI	GCNGC	3 cut(s)	188, 215, 640
BlsI	GCNGC	3 cut(s)	189, 216, 641
Bme1390I	CCNGG	3 cut(s)	462, 543, 585
Bme18I	GGWCC	3 cut(s)	182, 524, 587
BmgT120I	GGNCC	4 cut(s)	182, 464, 524, 587
BmrFI	CCNGG	3 cut(s)	462, 543, 585
BmsI	GCATC	2 cut(s)	201, 572
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	4 cut(s)	444, 477, 537, 567
Bpu10I	CCTNAGC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	461, 520, 541
Bsc4I	CCNNNNNNNGG	9 cut(s)	254, 275, 296, 353, 373, 440, 500, 542, 611
Bse118I	RCCGGY	3 cut(s)	313, 349, 433
Bse1I	ACTGG	5 cut(s)	58, 81, 162, 239, 413
BseBI	CCWGG	3 cut(s)	462, 543, 585
BseDI	CCNNGG	3 cut(s)	461, 520, 541
BseGI	GGATG	5 cut(s)	175, 265, 284, 427, 646
BseLI	CCNNNNNNNGG	9 cut(s)	254, 275, 296, 353, 373, 440, 500, 542, 611
BseMII	CTCAG	2 cut(s)	25, 84
BseNI	ACTGG	5 cut(s)	58, 81, 162, 239, 413
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	255, 314, 350, 434
BslI	CCNNNNNNNGG	9 cut(s)	254, 275, 296, 353, 373, 440, 500, 542, 611
BsnI	GGCC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	232, 652
BspACI	CCGC	5 cut(s)	185, 188, 338, 374, 640
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	2 cut(s)	24, 83
BspFNI	CGCG	1 cut(s)	479
BspPI	GGATC	1 cut(s)	647
BsrFI	RCCGGY	3 cut(s)	313, 349, 433
BsrI	ACTGG	5 cut(s)	58, 81, 162, 239, 413
BssAI	RCCGGY	3 cut(s)	313, 349, 433
BssECI	CCNNGG	3 cut(s)	461, 520, 541
BssMI	GATC	2 cut(s)	232, 652
Bst2UI	CCWGG	3 cut(s)	462, 543, 585
Bst4CI	ACNGT	3 cut(s)	95, 109, 614
BstC8I	GCNNGC	4 cut(s)	46, 130, 134, 176
BstDEI	CTNAG	2 cut(s)	11, 70
BstF5I	GGATG	5 cut(s)	175, 265, 284, 427, 646
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	2 cut(s)	235, 655
BstMBI	GATC	2 cut(s)	232, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 184
BstNI	CCWGG	3 cut(s)	462, 543, 585
BstNSI	RCATGY	3 cut(s)	136, 374, 395
BstSCI	CCNGG	3 cut(s)	460, 541, 583
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	226
BsuI	GTATCC	3 cut(s)	390, 492, 588
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	5 cut(s)	175, 265, 284, 427, 646
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	4 cut(s)	46, 130, 134, 176
CaiI	CAGNNNCTG	1 cut(s)	560
Cfr10I	RCCGGY	3 cut(s)	313, 349, 433
Cfr13I	GGNCC	4 cut(s)	182, 464, 524, 587
CviAII	CATG	4 cut(s)	133, 251, 371, 392
CviJI	RGCY	7 cut(s)	15, 67, 101, 178, 412, 466, 639
CviKI_1	RGCY	7 cut(s)	15, 67, 101, 178, 412, 466, 639
DdeI	CTNAG	2 cut(s)	11, 70
DpnI	GATC	2 cut(s)	234, 654
DpnII	GATC	2 cut(s)	232, 652
EciI	GGCGGA	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco32I	GATATC	5 cut(s)	260, 302, 323, 344, 359
Eco47I	GGWCC	3 cut(s)	182, 524, 587
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoO109I	RGGNCCY	2 cut(s)	464, 587
EcoRII	CCWGG	3 cut(s)	460, 541, 583
EcoRV	GATATC	5 cut(s)	260, 302, 323, 344, 359
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	4 cut(s)	136, 254, 374, 395
FatI	CATG	4 cut(s)	132, 250, 370, 391
FauI	CCCGC	2 cut(s)	331, 367
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	188, 215, 640
FokI	GGATG	5 cut(s)	182, 252, 291, 414, 633
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	188, 215, 640
FspBI	CTAG	1 cut(s)	636
GluI	GCNGC	3 cut(s)	188, 215, 640
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	4 cut(s)	444, 477, 537, 567
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	4 cut(s)	255, 314, 350, 434
Hin1II	CATG	4 cut(s)	136, 254, 374, 395
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	497, 557
HpaII	CCGG	4 cut(s)	255, 314, 350, 434
HphI	GGTGA	2 cut(s)	205, 276
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	3 cut(s)	73, 210, 524
Hpy188III	TCNNGA	5 cut(s)	494, 501, 554, 608, 650
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	614
HpyCH4III	ACNGT	3 cut(s)	95, 109, 614
HpyCH4V	TGCA	5 cut(s)	132, 136, 214, 395, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 184
HpyF3I	CTNAG	2 cut(s)	11, 70
Hsp92II	CATG	4 cut(s)	136, 254, 374, 395
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	232, 652
LmnI	GCTCC	3 cut(s)	38, 64, 574
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	2 cut(s)	201, 572
MaeI	CTAG	1 cut(s)	636
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	2 cut(s)	234, 654
MboI	GATC	2 cut(s)	232, 652
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	18, 506, 597
MluI	ACGCGT	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	506
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	2 cut(s)	190, 338
MspI	CCGG	4 cut(s)	255, 314, 350, 434
MspR9I	CCNGG	3 cut(s)	462, 543, 585
MvaI	CCWGG	3 cut(s)	462, 543, 585
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	142, 184
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	2 cut(s)	232, 652
NlaIII	CATG	4 cut(s)	136, 254, 374, 395
NmuCI	GTSAC	1 cut(s)	222
NspI	RCATGY	3 cut(s)	136, 374, 395
PaeI	GCATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	557
PflMI	CCANNNNNTGG	2 cut(s)	275, 542
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	3 cut(s)	189, 216, 641
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PpuMI	RGGWCCY	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	3 cut(s)	460, 541, 583
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	3 cut(s)	460, 541, 583
PspPI	GGNCC	4 cut(s)	182, 464, 524, 587
PspPPI	RGGWCCY	1 cut(s)	587
PstNI	CAGNNNCTG	1 cut(s)	560
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	3 cut(s)	188, 215, 640
Sau3AI	GATC	2 cut(s)	232, 652
Sau96I	GGNCC	4 cut(s)	182, 464, 524, 587
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	462, 543, 585
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	9 cut(s)	69, 103, 180, 289, 475, 522, 529, 592, 628
SfaNI	GCATC	2 cut(s)	201, 572
SinI	GGWCC	3 cut(s)	182, 524, 587
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	3 cut(s)	18, 506, 597
SsiI	CCGC	5 cut(s)	185, 188, 338, 374, 640
SspMI	CTAG	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	460, 541, 583
TaaI	ACNGT	3 cut(s)	95, 109, 614
TaqI	TCGA	1 cut(s)	609
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	3 cut(s)	18, 506, 597
TauI	GCSGC	2 cut(s)	190, 642
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	222
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	241, 564
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	2 cut(s)	275, 542
VpaK11BI	GGWCC	3 cut(s)	182, 524, 587
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	3 cut(s)	136, 374, 395
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.