Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002572.1

Orthogroup ID

OG0001223

Physical Location & Seq

Genomic Coordinates Forward (+)

46140 .. 48643

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002572.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggggttgcgcgacctggagaaaatgaaggtccgccaggactaccggaatctatggcacaaggatttgatgagcaccatgactttcgatcccgccttttcctcaactcgctatctaatacaagatgagttcaatataaagacaacaccatgtgataactgcattattacgcagcacaagattgaactggacaaaagagatggcaagtatgctccacagccagttatggcagctcctccaacgcagcagatgtcacgcgccgatcactcaattccttcccccggatatccacctcaaggatctccaccgatgggatatcatcaacctccaccaatgggatatcctcatcaaccaccaggatatatgcatcctccggcatatgggcagcctatgaacgggtcctcaaaaggcggccaagatccgtatcctcctgttccttatcatccacaacatccaccatatccacctcatatgtatcatccacatgctgcttattttccagggccagcaccaggtgcttatcctgcaggtccaccaccaggtctttatcctcaaggtccagactcgggttttgttccaggtccagaatctggtccttatcctcctgcacgacctcctccacctcctcctggctatcaagcagaaccaagtgcacctcttcctcctcatgaagaacaccctgaaactgctccgactagcagcaatcctcccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.1

Weight (kDa)

6.48

Isoelectric Point (pI)

83.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT1G63830 AT4G23470 AT4G23470 AT4G23470 AT4G23470 AT5G41390 AT5G41390
fragaria_vesca	FvH4_5g02860 FvH4_7g14890
malus_domestica	MD01G1067500.v1.1 MD06G1088200.v1.1 MD14G1109300.v1.1
prunus_persica	Prupe.2G173900_v2.0.a1 Prupe.2G173900_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.2G174000_v2.0.a1 Prupe.5G104200_v2.0.a1
pyrus_communis	pycom01g09660 pycom01g09670 pycom07g13100 pycom14g10340
rosa_chinensis	RchiOBHm_Chr1g0356831 RchiOBHm_Chr1g0356841 RchiOBHm_Chr7g0197021 RchiOBHm_Chr7g0197041
rosa_laevigata	RLG00000003964 RLG00000028077 RLG00000028078
rosa_multiflora	Rmu_sc0001083.1_g000001 Rmu_sc0002572.1_g000010
rosa_roxburghii	Rroxscaffold_3G00258710 Rroxscaffold_4G00299270 Rroxscaffold_4G00299280
rosa_rugosa	Rorug01G0251500 Rorug01G0251600 Rorug07G0037100 Rorug07G0037200
rosa_samantha	Rh1AG266100 Rh1AG266200 Rh1BG233500 Rh1BG233600 Rh1CG249500 Rh1CG249600 Rh1DG260900 Rh1DG261000 Rh7AG162100 Rh7BG164200 Rh7CG170300 Rh7DG163600
rosa_wichuraiana	Rw1G023510 Rw1G023520 Rw7G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccII	CGCG	2 cut(s)	12, 258
AciI	CCGC	3 cut(s)	34, 93, 411
AclWI	GGATC	3 cut(s)	83, 307, 413
AcoI	YGGCCR	1 cut(s)	412
AdeI	CACNNNGTG	2 cut(s)	152, 515
AgsI	TTSAA	2 cut(s)	133, 185
AjnI	CCWGG	8 cut(s)	15, 36, 355, 499, 511, 538, 577, 628
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw21I	GWGCWC	2 cut(s)	77, 655
Alw44I	GTGCAC	1 cut(s)	651
AlwI	GGATC	3 cut(s)	83, 307, 413
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	2 cut(s)	412, 503
ApaLI	GTGCAC	1 cut(s)	651
ApeKI	GCWGC	6 cut(s)	172, 230, 244, 385, 488, 699
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AspLEI	GCGC	2 cut(s)	12, 260
AspS9I	GGNCC	7 cut(s)	31, 399, 503, 530, 557, 581, 593
AsuC2I	CCSGG	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	6 cut(s)	31, 399, 530, 557, 581, 593
BaeGI	GKGCMC	1 cut(s)	655
Bbv12I	GWGCWC	2 cut(s)	77, 655
BbvI	GCAGC	6 cut(s)	184, 242, 256, 397, 475, 711
BccI	CCATC	2 cut(s)	194, 304
BciT130I	CCWGG	8 cut(s)	17, 38, 357, 501, 513, 540, 579, 630
BciVI	GTATCC	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	282
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	7 cut(s)	173, 231, 245, 386, 412, 489, 700
BlsI	GCNGC	7 cut(s)	174, 232, 246, 387, 413, 490, 701
Bme1390I	CCNGG	9 cut(s)	17, 38, 282, 357, 501, 513, 540, 579, 630
Bme18I	GGWCC	6 cut(s)	31, 399, 530, 557, 581, 593
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	7 cut(s)	31, 399, 503, 530, 557, 581, 593
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	9 cut(s)	17, 38, 282, 357, 501, 513, 540, 579, 630
BmsI	GCATC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	38
BpuEI	CTTGAG	2 cut(s)	279, 537
BpuMI	CCSGG	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	280, 500
BsaWI	WCCGGW	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	192, 221
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	8 cut(s)	17, 38, 357, 501, 513, 540, 579, 630
BseDI	CCNNGG	2 cut(s)	280, 500
BseGI	GGATG	4 cut(s)	367, 442, 451, 478
BseJI	GATNNNNATC	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	192, 221
BseRI	GAGGAG	4 cut(s)	225, 606, 615, 654
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	6 cut(s)	184, 242, 256, 397, 475, 711
BsgI	GTGCAG	1 cut(s)	591
Bsh1236I	CGCG	2 cut(s)	12, 258
BshFI	GGCC	2 cut(s)	414, 505
BsiHKAI	GWGCWC	2 cut(s)	77, 655
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	3 cut(s)	46, 282, 374
BsnI	GGCC	2 cut(s)	414, 505
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	77, 655
Bsp143I	GATC	4 cut(s)	88, 262, 299, 418
BspACI	CCGC	3 cut(s)	34, 93, 411
BspANI	GGCC	2 cut(s)	414, 505
BspFNI	CGCG	2 cut(s)	12, 258
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	3 cut(s)	83, 307, 413
BsrI	ACTGG	2 cut(s)	192, 221
BssECI	CCNNGG	2 cut(s)	280, 500
BssMI	GATC	4 cut(s)	88, 262, 299, 418
Bst2UI	CCWGG	8 cut(s)	17, 38, 357, 501, 513, 540, 579, 630
Bst6I	CTCTTC	1 cut(s)	663
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	507
BstF5I	GGATG	4 cut(s)	367, 442, 451, 478
BstFNI	CGCG	2 cut(s)	12, 258
BstHHI	GCGC	2 cut(s)	12, 260
BstKTI	GATC	4 cut(s)	91, 265, 302, 421
BstMBI	GATC	4 cut(s)	88, 262, 299, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 524
BstNI	CCWGG	8 cut(s)	17, 38, 357, 501, 513, 540, 579, 630
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	9 cut(s)	15, 36, 280, 355, 499, 511, 538, 577, 628
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	655
BstUI	CGCG	2 cut(s)	12, 258
BstV1I	GCAGC	6 cut(s)	184, 242, 256, 397, 475, 711
BstX2I	RGATCY	2 cut(s)	299, 418
BstYI	RGATCY	2 cut(s)	299, 418
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	414, 505
BtsCI	GGATG	4 cut(s)	367, 442, 451, 478
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	2 cut(s)	12, 260
Cfr13I	GGNCC	7 cut(s)	31, 399, 503, 530, 557, 581, 593
CsiI	ACCWGGT	2 cut(s)	511, 538
CviAII	CATG	4 cut(s)	79, 150, 485, 668
CviJI	RGCY	6 cut(s)	220, 233, 388, 414, 505, 633
CviKI_1	RGCY	6 cut(s)	220, 233, 388, 414, 505, 633
DpnI	GATC	4 cut(s)	90, 264, 301, 420
DpnII	GATC	4 cut(s)	88, 262, 299, 418
DraIII	CACNNNGTG	2 cut(s)	152, 515
EaeI	YGGCCR	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	23
Eco32I	GATATC	3 cut(s)	287, 317, 341
Eco47I	GGWCC	6 cut(s)	31, 399, 530, 557, 581, 593
Eco88I	CYCGRG	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	8 cut(s)	15, 36, 355, 499, 511, 538, 577, 628
EcoRV	GATATC	3 cut(s)	287, 317, 341
EcoT22I	ATGCAT	1 cut(s)	369
FaeI	CATG	4 cut(s)	82, 153, 488, 671
FatI	CATG	4 cut(s)	78, 149, 484, 667
FauI	CCCGC	1 cut(s)	100
FauNDI	CATATG	2 cut(s)	379, 471
Fnu4HI	GCNGC	7 cut(s)	173, 231, 245, 386, 412, 489, 700
FokI	GGATG	4 cut(s)	354, 429, 438, 465
Fsp4HI	GCNGC	7 cut(s)	173, 231, 245, 386, 412, 489, 700
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	2 cut(s)	11, 259
GluI	GCNGC	7 cut(s)	173, 231, 245, 386, 412, 489, 700
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	414, 505
HapII	CCGG	3 cut(s)	46, 282, 374
HhaI	GCGC	2 cut(s)	12, 260
Hin1II	CATG	4 cut(s)	82, 153, 488, 671
Hin6I	GCGC	2 cut(s)	10, 258
HinP1I	GCGC	2 cut(s)	10, 258
HinfI	GANTC	3 cut(s)	49, 563, 587
HpaII	CCGG	3 cut(s)	46, 282, 374
Hpy166II	GTNNAC	2 cut(s)	533, 653
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	3 cut(s)	560, 584, 668
Hpy8I	GTNNAC	2 cut(s)	533, 653
HpyAV	CCTTC	2 cut(s)	22, 285
HpyCH4V	TGCA	5 cut(s)	162, 367, 527, 608, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 524
Hsp92II	CATG	4 cut(s)	82, 153, 488, 671
HspAI	GCGC	2 cut(s)	10, 258
Kzo9I	GATC	4 cut(s)	88, 262, 299, 418
LmnI	GCTCC	3 cut(s)	217, 238, 694
Lsp1109I	GCAGC	6 cut(s)	184, 242, 256, 397, 475, 711
LweI	GCATC	1 cut(s)	376
MabI	ACCWGGT	2 cut(s)	511, 538
MaeI	CTAG	1 cut(s)	696
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	4 cut(s)	90, 264, 301, 420
MboI	GATC	4 cut(s)	88, 262, 299, 418
MboII	GAAGA	2 cut(s)	650, 683
MflI	RGATCY	2 cut(s)	299, 418
MhlI	GDGCHC	2 cut(s)	77, 655
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	2 cut(s)	263, 716
Mph1103I	ATGCAT	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	3 cut(s)	46, 282, 374
MspR9I	CCNGG	9 cut(s)	17, 38, 282, 357, 501, 513, 540, 579, 630
MvaI	CCWGG	8 cut(s)	17, 38, 357, 501, 513, 540, 579, 630
MvnI	CGCG	2 cut(s)	12, 258
MwoI	GCNNNNNNNGC	2 cut(s)	515, 524
NciI	CCSGG	1 cut(s)	282
NdeI	CATATG	2 cut(s)	379, 471
NdeII	GATC	4 cut(s)	88, 262, 299, 418
NlaIII	CATG	4 cut(s)	82, 153, 488, 671
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	369
NspI	RCATGY	1 cut(s)	488
PagI	TCATGA	1 cut(s)	667
PfeI	GAWTC	2 cut(s)	49, 587
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	7 cut(s)	174, 232, 246, 387, 413, 490, 701
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PpuMI	RGGWCCY	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	8 cut(s)	15, 36, 355, 499, 511, 538, 577, 628
PspGI	CCWGG	8 cut(s)	15, 36, 355, 499, 511, 538, 577, 628
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	7 cut(s)	31, 399, 503, 530, 557, 581, 593
PspPPI	RGGWCCY	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	299, 418
RseI	CAYNNNNRTG	1 cut(s)	483
SatI	GCNGC	7 cut(s)	173, 231, 245, 386, 412, 489, 700
Sau3AI	GATC	4 cut(s)	88, 262, 299, 418
Sau96I	GGNCC	7 cut(s)	31, 399, 503, 530, 557, 581, 593
SbfI	CCTGCAGG	1 cut(s)	529
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	9 cut(s)	17, 38, 282, 357, 501, 513, 540, 579, 630
SdaI	CCTGCAGG	1 cut(s)	529
SduI	GDGCHC	2 cut(s)	77, 655
SexAI	ACCWGGT	2 cut(s)	511, 538
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	6 cut(s)	31, 399, 530, 557, 581, 593
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	294, 552
SmoI	CTYRAG	2 cut(s)	294, 552
Sse8387I	CCTGCAGG	1 cut(s)	529
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	3 cut(s)	34, 93, 411
SspMI	CTAG	1 cut(s)	696
StyD4I	CCNGG	9 cut(s)	15, 36, 280, 355, 499, 511, 538, 577, 628
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	270
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	49, 587
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	6 cut(s)	172, 230, 244, 385, 488, 699
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	3 cut(s)	41, 407, 684
TspGWI	ACGGA	1 cut(s)	411
Van91I	CCANNNNNTGG	1 cut(s)	590
VneI	GTGCAC	1 cut(s)	651
VpaK11BI	GGWCC	6 cut(s)	31, 399, 530, 557, 581, 593
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.