FvH4_5g02860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001223
Physical Location & Seq
Forward (+)
1717308 .. 1720370
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02860.t1

Sequence Viewer

Length: 756 bp
ATGGCGGCGTCTCAGGCCAACATGGAGAAGATGCAGGTCCGCCAGAGCTACCGCAACCTCTGGCACTCCGACCTCATGGGAACTATGCAGGCCGATACTCGCTATTGCTGCTTCGCGGCGTTCTGTGCTCCGTGTGCATCATACTTGCTTCGGAAAAGAGCTCTTTACAATGACATGTCAAGATATGTTTGCTGTGCTGGTTATATGCCCTGCAGTGGTAGATGTGGGGAAAGTAAATGCCCTGAATTTTGCTTGGCCACTGAGGTCTTCTTGTGCTTTGGGCAGTCAGTGGCTTCAACTCGCTTTATGTTGCAGGATGAATTCAATATTCAGACAACGCAATGTGACAATTGCATTATTGGTTTCATGGTCTGCCTACAACAAGTTGCTTGTATTTTCTCCATAGTTGCCATGCTCGTTGGAAGTGAGGAAATCTCAGAGGCATCTCAGATATTGAACTGTTTGTCTGACCTGGTGTACTGCACAGTGTGTGCGTGTATGCAGACGCAACACAAGATCGAAATGGACAAGCGTGATGGCATGTTTGGACCCCAACCAATGGCAGTCCCCCAGTTTCAGCAGATGTCTCGCATTGATCAACAAATTCCTCCCAATGTTGGCTATCAGCCTCAACCAGCATACGGGTATCCACCTCCTCAGCAGTTTCAAGGCTACCCTCCAGCGGGATATCCTCCTCAGCAGGCTCAAGGCTATCCTCCAGCCGGATATCCTCCACCTGGTTATCCACCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.05

Weight (kDa)

5.68

Isoelectric Point (pI)

68.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 559
AccII CGCG 1 cut(s) 116
AciI CCGC 5 cut(s) 5, 40, 52, 116, 683
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 3 cut(s) 245, 320, 603
AcyI GRCGYC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 489
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 8 cut(s) 215, 559, 617, 641, 682, 683, 722, 737
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 4 cut(s) 297, 325, 457, 668
AjnI CCWGG 2 cut(s) 471, 736
AleI CACNNNNGTG 1 cut(s) 751
AluBI AGCT 2 cut(s) 48, 161
AluI AGCT 2 cut(s) 48, 161
Alw21I GWGCWC 2 cut(s) 130, 163
Alw26I GTCTC 2 cut(s) 15, 591
AoxI GGCC 3 cut(s) 15, 90, 255
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 3 cut(s) 245, 320, 603
AspS9I GGNCC 2 cut(s) 37, 548
AvaII GGWCC 2 cut(s) 37, 548
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 2 cut(s) 130, 163
BbvCI CCTCAGC 2 cut(s) 657, 696
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 2 cut(s) 473, 738
BciVI GTATCC 1 cut(s) 657
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 15, 591
BfmI CTRYAG 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 25
BfuI GTATCC 1 cut(s) 657
BisI GCNGC 3 cut(s) 6, 109, 117
BlsI GCNGC 3 cut(s) 7, 110, 118
Bme1390I CCNGG 2 cut(s) 473, 738
Bme18I GGWCC 2 cut(s) 37, 548
BmgT120I GGNCC 2 cut(s) 37, 548
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 2 cut(s) 473, 738
BmrI ACTGGG 1 cut(s) 565
BmsI GCATC 3 cut(s) 21, 146, 452
BmuI ACTGGG 1 cut(s) 565
BpiI GAAGAC 1 cut(s) 259
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 2 cut(s) 663, 702
Bpu10I CCTNAGC 2 cut(s) 657, 696
BpuEI CTTGAG 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 8
Bsc4I CCNNNNNNNGG 8 cut(s) 215, 559, 617, 641, 682, 683, 722, 737
Bse1I ACTGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 2 cut(s) 473, 738
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 8 cut(s) 215, 559, 617, 641, 682, 683, 722, 737
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 6 cut(s) 26, 252, 450, 461, 671, 710
BseNI ACTGG 1 cut(s) 571
BseRI GAGGAG 2 cut(s) 645, 684
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 466
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 3 cut(s) 17, 92, 257
BsiHKAI GWGCWC 2 cut(s) 130, 163
BsiSI CCGG 1 cut(s) 723
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 8 cut(s) 215, 559, 617, 641, 682, 683, 722, 737
BsmAI GTCTC 2 cut(s) 15, 591
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 3 cut(s) 17, 92, 257
Bsp1286I GDGCHC 2 cut(s) 130, 163
Bsp143I GATC 2 cut(s) 516, 595
BspACI CCGC 5 cut(s) 5, 40, 52, 116, 683
BspANI GGCC 3 cut(s) 17, 92, 257
BspCNI CTCAG 6 cut(s) 25, 253, 449, 460, 670, 709
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 550
BspMAI CTGCAG 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 1 cut(s) 571
BssMI GATC 2 cut(s) 516, 595
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 2 cut(s) 473, 738
Bst4CI ACNGT 2 cut(s) 461, 487
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 90, 702
BstDEI CTNAG 7 cut(s) 12, 261, 436, 447, 657, 696, 750
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 2 cut(s) 519, 598
BstMAI GTCTC 2 cut(s) 15, 591
BstMBI GATC 2 cut(s) 516, 595
BstMWI GCNNNNNNNGC 4 cut(s) 14, 108, 125, 134
BstNI CCWGG 2 cut(s) 473, 738
BstNSI RCATGY 2 cut(s) 178, 544
BstSCI CCNGG 2 cut(s) 471, 736
BstSFI CTRYAG 1 cut(s) 211
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 1 cut(s) 259
BsuI GTATCC 1 cut(s) 657
BsuRI GGCC 3 cut(s) 17, 92, 257
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 4 cut(s) 220, 258, 294, 492
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 90, 702
Cfr13I GGNCC 2 cut(s) 37, 548
CseI GACGC 1 cut(s) 514
CsiI ACCWGGT 2 cut(s) 471, 736
Csp6I GTAC 1 cut(s) 478
CviAII CATG 6 cut(s) 22, 76, 175, 367, 412, 541
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 7 cut(s) 12, 261, 436, 447, 657, 696, 750
DpnI GATC 2 cut(s) 518, 597
DpnII GATC 2 cut(s) 516, 595
DraIII CACNNNGTG 1 cut(s) 489
EaeI YGGCCR 1 cut(s) 255
EciI GGCGGA 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 163
Eco32I GATATC 2 cut(s) 689, 728
Eco47I GGWCC 2 cut(s) 37, 548
Eco53kI GAGCTC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 471, 736
EcoRV GATATC 2 cut(s) 689, 728
EcoT38I GRGCYC 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 6 cut(s) 25, 79, 178, 370, 415, 544
FaqI GGGAC 1 cut(s) 551
FatI CATG 6 cut(s) 21, 75, 174, 366, 411, 540
FauI CCCGC 1 cut(s) 676
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 3 cut(s) 6, 109, 117
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 3 cut(s) 6, 109, 117
GluI GCNGC 3 cut(s) 6, 109, 117
GsuI CTGGAG 2 cut(s) 663, 702
HaeIII GGCC 3 cut(s) 17, 92, 257
HapII CCGG 1 cut(s) 723
HgaI GACGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 6 cut(s) 25, 79, 178, 370, 415, 544
HpaII CCGG 1 cut(s) 723
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 6 cut(s) 70, 153, 333, 439, 450, 469
Hpy188III TCNNGA 1 cut(s) 180
Hpy8I GTNNAC 1 cut(s) 478
HpyCH4III ACNGT 2 cut(s) 461, 487
HpyCH4V TGCA 8 cut(s) 34, 88, 137, 213, 313, 354, 483, 502
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 108, 125, 134
HpyF3I CTNAG 7 cut(s) 12, 261, 436, 447, 657, 696, 750
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 6 cut(s) 25, 79, 178, 370, 415, 544
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 2 cut(s) 516, 595
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 3 cut(s) 21, 146, 452
MabI ACCWGGT 2 cut(s) 471, 736
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 518, 597
MboI GATC 2 cut(s) 516, 595
MboII GAAGA 2 cut(s) 40, 259
MfeI CAATTG 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 130, 163
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 4 cut(s) 245, 320, 349, 603
MluNI TGGCCA 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 93, 400
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 751
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 1 cut(s) 723
MspR9I CCNGG 2 cut(s) 473, 738
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 2 cut(s) 473, 738
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 14, 108, 125, 134
NdeII GATC 2 cut(s) 516, 595
NlaIII CATG 6 cut(s) 25, 79, 178, 370, 415, 544
NlaIV GGNNCC 1 cut(s) 550
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 2 cut(s) 178, 544
OliI CACNNNNGTG 1 cut(s) 751
PciI ACATGT 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 3 cut(s) 7, 110, 118
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 471, 736
PspGI CCWGG 2 cut(s) 471, 736
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 2 cut(s) 37, 548
PstI CTGCAG 1 cut(s) 215
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 751
SacI GAGCTC 1 cut(s) 163
SatI GCNGC 3 cut(s) 6, 109, 117
Sau3AI GATC 2 cut(s) 516, 595
Sau96I GGNCC 2 cut(s) 37, 548
ScrFI CCNGG 2 cut(s) 473, 738
SduI GDGCHC 2 cut(s) 130, 163
SexAI ACCWGGT 2 cut(s) 471, 736
SfaNI GCATC 3 cut(s) 21, 146, 452
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 2 cut(s) 37, 548
SmiMI CAYNNNNRTG 1 cut(s) 751
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
Sse9I AATT 4 cut(s) 245, 320, 349, 603
SsiI CCGC 5 cut(s) 5, 40, 52, 116, 683
SspI AATATT 1 cut(s) 328
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 471, 736
TaaI ACNGT 2 cut(s) 461, 487
TaqI TCGA 1 cut(s) 519
TasI AATT 4 cut(s) 245, 320, 349, 603
TatI WGTACW 1 cut(s) 477
TauI GCSGC 2 cut(s) 8, 119
TscAI CASTG 4 cut(s) 220, 265, 294, 492
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 333, 355
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 4 cut(s) 220, 265, 294, 492
Van91I CCANNNNNTGG 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 37, 548
XapI RAATTY 3 cut(s) 245, 320, 603
XceI RCATGY 2 cut(s) 178, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.