Rw1G023520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001223
Physical Location & Seq
Forward (+)
49329359 .. 49332566
3208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023520.1

Sequence Viewer

Length: 1047 bp
ATGGGGTTGCGCGACCTGGAGAAAATGAAGGTCCGCCAGGACTACCGGAATCTATGGCACAAGGATTTGATGAGCACCATGACTTTCGATCCCGCCTATTGTTGCTTTGCGCTTTTCTGTCCATATTGTGCTTCTTACAAGCTTCGCAAACGAGCTATTTACAATGATATGTCAAGGTATATATGTTGTGGAGGATATATGCCATGCAGCGGAAAGTGTGGAGAGAAACACTGCCCTGCATTTTGTCTCTGCTGTGAGGTTTTATGTTGCTTTGCACCTTCAGTTTCCTCAACTCGCTATCTAATACAAGATGAGTTCAATATAAAGACAACACCATGTGATAACTGCATTATTGGATGCATGGTCTGTCTCAAACAAATATCATGTATTTGCAGCTTGCTTGCTTGCCTAACAGGAAGTGGTGAACTCGGTGATATTGCTGAGTGCCTGGGCTGTATTTCTGATACAGTTTATTGCTCGGTTTGTGCTTGCATGCAGACGCAGCACAAGATTGAACTGGACAAAAGAGATGGCAAGTATGCTCCACAGCCAGTTATGGCAGCTCCTCCAACGCAGCAGATGTCACGCGCCGATCACTCAATTCCTTCCCCCGGATATCCACCTCAAGGATCTCCACCGATGGGATATCATCAACCTCCACCAATGGGATATCCTCATCAACCACCAGGATATATGCATCCTCCGGCATATGGGCAGCCTATGAACGGGTCCTCAAAAGGCAGCCAAGATCCGTATCCTCCTGTTCCTTATCATCCACAACATCCACCATATCCACCTCATATGTATCATCCACATGCTGCTTATTTTCCAGGGCCAGCACCAGGTGCTTATCCTGCAGGTCCACCACCAGGTCTTTATCCTCAAGGTCCAGACTCGGGTTTTGTTCCAGGTCCAGAATCTGGTCCTTATCCTCCTGCACGACCTCCTCCACCTCCTCCTGGCTATCAAGCAGAACCAAGTGCACCTCTTCCTCCTCATGAAGAACACCCTGAAACTGCTCCGACTAGCAGCAATCCTCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

37.96

Weight (kDa)

6.67

Isoelectric Point (pI)

76.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 848
AccB7I CCANNNNNTGG 1 cut(s) 920
AccII CGCG 2 cut(s) 12, 588
AciI CCGC 3 cut(s) 34, 93, 210
AclWI GGATC 3 cut(s) 83, 637, 743
AcuI CTGAAG 1 cut(s) 264
AdeI CACNNNGTG 2 cut(s) 338, 845
AgsI TTSAA 2 cut(s) 319, 515
AjnI CCWGG 9 cut(s) 15, 36, 447, 685, 829, 841, 868, 907, 958
AluBI AGCT 4 cut(s) 142, 155, 396, 563
AluI AGCT 4 cut(s) 142, 155, 396, 563
Alw21I GWGCWC 2 cut(s) 77, 985
Alw26I GTCTC 2 cut(s) 251, 374
Alw44I GTGCAC 1 cut(s) 981
AlwI GGATC 3 cut(s) 83, 637, 743
AlwNI CAGNNNCTG 1 cut(s) 920
Ama87I CYCGRG 1 cut(s) 895
AoxI GGCC 1 cut(s) 833
ApaLI GTGCAC 1 cut(s) 981
ApeKI GCWGC 9 cut(s) 207, 393, 502, 560, 574, 715, 741, 818, 1029
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
AspLEI GCGC 3 cut(s) 12, 112, 590
AspS9I GGNCC 7 cut(s) 31, 729, 833, 860, 887, 911, 923
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 2 cut(s) 434, 443
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 6 cut(s) 31, 729, 860, 887, 911, 923
BaeGI GKGCMC 1 cut(s) 985
Bbv12I GWGCWC 2 cut(s) 77, 985
BbvI GCAGC 9 cut(s) 219, 405, 514, 572, 586, 727, 753, 805, 1041
BccI CCATC 2 cut(s) 524, 634
BciT130I CCWGG 9 cut(s) 17, 38, 449, 687, 831, 843, 870, 909, 960
BciVI GTATCC 1 cut(s) 765
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 2 cut(s) 251, 374
BfaI CTAG 1 cut(s) 1026
BfmI CTRYAG 1 cut(s) 855
BfuAI ACCTGC 1 cut(s) 848
BfuI GTATCC 1 cut(s) 765
BisI GCNGC 9 cut(s) 208, 394, 503, 561, 575, 716, 742, 819, 1030
BlsI GCNGC 9 cut(s) 209, 395, 504, 562, 576, 717, 743, 820, 1031
Bme18I GGWCC 6 cut(s) 31, 729, 860, 887, 911, 923
BmeT110I CYCGRG 1 cut(s) 895
BmgT120I GGNCC 7 cut(s) 31, 729, 833, 860, 887, 911, 923
BmiI GGNNCC 1 cut(s) 730
BmsI GCATC 2 cut(s) 347, 706
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 609, 867
BpuMI CCSGG 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 753
BsaJI CCNNGG 3 cut(s) 448, 610, 830
BsaWI WCCGGW 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 522, 551
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 9 cut(s) 17, 38, 449, 687, 831, 843, 870, 909, 960
BseDI CCNNGG 3 cut(s) 448, 610, 830
BseGI GGATG 5 cut(s) 362, 697, 772, 781, 808
BseJI GATNNNNATC 1 cut(s) 753
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 2 cut(s) 522, 551
BseRI GAGGAG 4 cut(s) 555, 936, 945, 984
BseSI GKGCMC 1 cut(s) 985
BseXI GCAGC 9 cut(s) 219, 405, 514, 572, 586, 727, 753, 805, 1041
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 2 cut(s) 12, 588
BshFI GGCC 1 cut(s) 835
BsiHKAI GWGCWC 2 cut(s) 77, 985
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 3 cut(s) 46, 612, 704
BsmAI GTCTC 2 cut(s) 251, 374
BsnI GGCC 1 cut(s) 835
BsoBI CYCGRG 1 cut(s) 895
Bsp1286I GDGCHC 2 cut(s) 77, 985
Bsp143I GATC 4 cut(s) 88, 592, 629, 748
BspACI CCGC 3 cut(s) 34, 93, 210
BspANI GGCC 1 cut(s) 835
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 2 cut(s) 12, 588
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 1 cut(s) 730
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 848
BspPI GGATC 3 cut(s) 83, 637, 743
BsrI ACTGG 2 cut(s) 522, 551
BssECI CCNNGG 3 cut(s) 448, 610, 830
BssMI GATC 4 cut(s) 88, 592, 629, 748
Bst2UI CCWGG 9 cut(s) 17, 38, 449, 687, 831, 843, 870, 909, 960
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 993
BstAPI GCANNNNNTGC 1 cut(s) 845
BstC8I GCNNGC 6 cut(s) 398, 402, 406, 490, 494, 837
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 5 cut(s) 362, 697, 772, 781, 808
BstFNI CGCG 2 cut(s) 12, 588
BstHHI GCGC 3 cut(s) 12, 112, 590
BstKTI GATC 4 cut(s) 91, 595, 632, 751
BstMAI GTCTC 2 cut(s) 251, 374
BstMBI GATC 4 cut(s) 88, 592, 629, 748
BstMWI GCNNNNNNNGC 3 cut(s) 502, 845, 854
BstNI CCWGG 9 cut(s) 17, 38, 449, 687, 831, 843, 870, 909, 960
BstNSI RCATGY 2 cut(s) 496, 818
BstSFI CTRYAG 1 cut(s) 855
BstSLI GKGCMC 1 cut(s) 985
BstUI CGCG 2 cut(s) 12, 588
BstV1I GCAGC 9 cut(s) 219, 405, 514, 572, 586, 727, 753, 805, 1041
BstX2I RGATCY 2 cut(s) 629, 748
BstYI RGATCY 2 cut(s) 629, 748
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 1 cut(s) 835
BtsCI GGATG 5 cut(s) 362, 697, 772, 781, 808
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 6 cut(s) 398, 402, 406, 490, 494, 837
CaiI CAGNNNCTG 1 cut(s) 920
CciI TCATGA 1 cut(s) 997
CfoI GCGC 3 cut(s) 12, 112, 590
Cfr13I GGNCC 7 cut(s) 31, 729, 833, 860, 887, 911, 923
CseI GACGC 1 cut(s) 508
CsiI ACCWGGT 2 cut(s) 841, 868
CviAII CATG 8 cut(s) 79, 204, 336, 361, 384, 493, 815, 998
DdeI CTNAG 1 cut(s) 441
DpnI GATC 4 cut(s) 90, 594, 631, 750
DpnII GATC 4 cut(s) 88, 592, 629, 748
DraIII CACNNNGTG 2 cut(s) 338, 845
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
EciI GGCGGA 1 cut(s) 23
Eco32I GATATC 3 cut(s) 617, 647, 671
Eco47I GGWCC 6 cut(s) 31, 729, 860, 887, 911, 923
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 895
EcoO109I RGGNCCY 1 cut(s) 729
EcoRII CCWGG 9 cut(s) 15, 36, 447, 685, 829, 841, 868, 907, 958
EcoRV GATATC 3 cut(s) 617, 647, 671
EcoT22I ATGCAT 2 cut(s) 362, 699
FaeI CATG 8 cut(s) 82, 207, 339, 364, 387, 496, 818, 1001
FatI CATG 8 cut(s) 78, 203, 335, 360, 383, 492, 814, 997
FauI CCCGC 1 cut(s) 100
FauNDI CATATG 2 cut(s) 709, 801
Fnu4HI GCNGC 9 cut(s) 208, 394, 503, 561, 575, 716, 742, 819, 1030
FokI GGATG 5 cut(s) 369, 684, 759, 768, 795
Fsp4HI GCNGC 9 cut(s) 208, 394, 503, 561, 575, 716, 742, 819, 1030
FspBI CTAG 1 cut(s) 1026
GlaI GCGC 3 cut(s) 11, 111, 589
GluI GCNGC 9 cut(s) 208, 394, 503, 561, 575, 716, 742, 819, 1030
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 835
HapII CCGG 3 cut(s) 46, 612, 704
HgaI GACGC 1 cut(s) 508
HhaI GCGC 3 cut(s) 12, 112, 590
Hin1II CATG 8 cut(s) 82, 207, 339, 364, 387, 496, 818, 1001
Hin6I GCGC 3 cut(s) 10, 110, 588
HinP1I GCGC 3 cut(s) 10, 110, 588
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 3 cut(s) 49, 893, 917
HpaII CCGG 3 cut(s) 46, 612, 704
HphI GGTGA 2 cut(s) 434, 443
Hpy166II GTNNAC 3 cut(s) 425, 863, 983
Hpy188I TCNGA 2 cut(s) 463, 1023
Hpy188III TCNNGA 3 cut(s) 890, 914, 998
Hpy8I GTNNAC 3 cut(s) 425, 863, 983
HpyAV CCTTC 3 cut(s) 22, 288, 615
HpyCH4III ACNGT 1 cut(s) 469
HpyF10VI GCNNNNNNNGC 3 cut(s) 502, 845, 854
HpyF3I CTNAG 1 cut(s) 441
Hsp92II CATG 8 cut(s) 82, 207, 339, 364, 387, 496, 818, 1001
HspAI GCGC 3 cut(s) 10, 110, 588
Kzo9I GATC 4 cut(s) 88, 592, 629, 748
LmnI GCTCC 3 cut(s) 547, 568, 1024
Lsp1109I GCAGC 9 cut(s) 219, 405, 514, 572, 586, 727, 753, 805, 1041
LweI GCATC 2 cut(s) 347, 706
MabI ACCWGGT 2 cut(s) 841, 868
MaeI CTAG 1 cut(s) 1026
MaeIII GTNAC 1 cut(s) 582
MalI GATC 4 cut(s) 90, 594, 631, 750
MboI GATC 4 cut(s) 88, 592, 629, 748
MboII GAAGA 2 cut(s) 980, 1013
MflI RGATCY 2 cut(s) 629, 748
MhlI GDGCHC 2 cut(s) 77, 985
MluCI AATT 1 cut(s) 600
MlyI GAGTC 1 cut(s) 887
MmeI TCCRAC 2 cut(s) 593, 1046
Mph1103I ATGCAT 2 cut(s) 362, 699
MslI CAYNNNNRTG 1 cut(s) 813
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 3 cut(s) 46, 612, 704
MvaI CCWGG 9 cut(s) 17, 38, 449, 687, 831, 843, 870, 909, 960
MvnI CGCG 2 cut(s) 12, 588
MwoI GCNNNNNNNGC 3 cut(s) 502, 845, 854
NciI CCSGG 1 cut(s) 612
NdeI CATATG 2 cut(s) 709, 801
NdeII GATC 4 cut(s) 88, 592, 629, 748
NlaIII CATG 8 cut(s) 82, 207, 339, 364, 387, 496, 818, 1001
NlaIV GGNNCC 1 cut(s) 730
NmuCI GTSAC 1 cut(s) 582
NsiI ATGCAT 2 cut(s) 362, 699
NspI RCATGY 2 cut(s) 496, 818
PaeI GCATGC 1 cut(s) 496
PagI TCATGA 1 cut(s) 997
PfeI GAWTC 2 cut(s) 49, 917
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 9 cut(s) 209, 395, 504, 562, 576, 717, 743, 820, 1031
PleI GAGTC 1 cut(s) 887
PpsI GAGTC 1 cut(s) 887
PpuMI RGGWCCY 1 cut(s) 729
Psp5II RGGWCCY 1 cut(s) 729
Psp6I CCWGG 9 cut(s) 15, 36, 447, 685, 829, 841, 868, 907, 958
PspGI CCWGG 9 cut(s) 15, 36, 447, 685, 829, 841, 868, 907, 958
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 7 cut(s) 31, 729, 833, 860, 887, 911, 923
PspPPI RGGWCCY 1 cut(s) 729
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 920
PsuI RGATCY 2 cut(s) 629, 748
RseI CAYNNNNRTG 1 cut(s) 813
SatI GCNGC 9 cut(s) 208, 394, 503, 561, 575, 716, 742, 819, 1030
Sau3AI GATC 4 cut(s) 88, 592, 629, 748
Sau96I GGNCC 7 cut(s) 31, 729, 833, 860, 887, 911, 923
SbfI CCTGCAGG 1 cut(s) 859
SchI GAGTC 1 cut(s) 887
SdaI CCTGCAGG 1 cut(s) 859
SduI GDGCHC 2 cut(s) 77, 985
SexAI ACCWGGT 2 cut(s) 841, 868
SfaNI GCATC 2 cut(s) 347, 706
SfcI CTRYAG 1 cut(s) 855
SinI GGWCC 6 cut(s) 31, 729, 860, 887, 911, 923
SmiMI CAYNNNNRTG 1 cut(s) 813
SmlI CTYRAG 2 cut(s) 624, 882
SmoI CTYRAG 2 cut(s) 624, 882
SphI GCATGC 1 cut(s) 496
Sse8387I CCTGCAGG 1 cut(s) 859
Sse9I AATT 1 cut(s) 600
SsiI CCGC 3 cut(s) 34, 93, 210
SspMI CTAG 1 cut(s) 1026
TaaI ACNGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 600
TfiI GAWTC 2 cut(s) 49, 917
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 1 cut(s) 582
TseI GCWGC 9 cut(s) 207, 393, 502, 560, 574, 715, 741, 818, 1029
Tsp45I GTSAC 1 cut(s) 582
TspDTI ATGAA 3 cut(s) 41, 737, 1014
TspGWI ACGGA 1 cut(s) 741
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 920
VneI GTGCAC 1 cut(s) 981
VpaK11BI GGWCC 6 cut(s) 31, 729, 860, 887, 911, 923
XceI RCATGY 2 cut(s) 496, 818
XspI CTAG 1 cut(s) 1026
Zsp2I ATGCAT 2 cut(s) 362, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.