FvH4_7g14890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001223
Physical Location & Seq
Forward (+)
13037667 .. 13040582
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14890.t1

Sequence Viewer

Length: 1023 bp
ATGGGGTTAAAGGACTTGGAGAGAATTAAGGTCCGCCAGGACTACCGGAATCTATGGCACAAGGATTTGATGAGCACCATGACTGCCGACCCTGGCTATTGTTGTTTTGCGTGTTGCTGTCCATATTGTGCTTCTTTCAAACTTCGCAAACGAGCTCTTTACGATGATATGTCAAGGTATCGATGTTGTGGAGGATATATGCCATGCAGCGGAAGGTGTGGAGAGAGACACTGCCCTACATGTTGTCTTTGCTGTGAGGTTTTCTGTTGCTTTGGACCTTCGGTTTCCTCAACTCGCTACATAATACAAGATGAGTTCAATATAAAGACAACAGGATGTGATAACTGCATTATTGGATGCATGGTCTGTCTCCAACAAGTAGCATGCATTTGTAACATCCTTGCTTGCCTAACAGGAAGTGGTGAAATCAATGATATTGCTGAGTGTCTGAGCTGTATCGCTGAATCGGTTTATTGCTCGGTTTGTGCTTGCATGCAGACGCAGCACAACATTGAACTGAACAAAAGAGATGGCAAGTTTGAGACTACTCCACATCCAGTAATGGCAGCTCCTCAAGCGCAGCAGATGTCACGCAGCGTCGATGCCTCAGCTCCTTCCCAAGGATCTCCCCCAATGGGATATCCACCTCAAGGATCTCCTCCACCAATGGCATATATGCATCCTCCGGCATATGGGCAGCCTATGAACCCCCACGGCGGCCATGATCCATACGCTCCTGTTGCTTATCATGGCCAACATCCACAATATCCACCTCAAATGTATCATCCACATGCTCCTTATATTCCAGGGCATCCACCAGGTGCTTACCCTGCAGGTCCACCTTCAGGTCCTTATGACTCGGGTTTTATTCCAGGTCCAGAATCTGGTCCTTATCCTCCTTCACGACCTCCTCCGCCTCCTCCTGGCTATCACGCAGAAGCTCCAAGTGCACCTCTTGCTCCTCATGAAGAACACCCCGACACTGAGCGTCCTAGCAGCAATCCTCCGGTTCCTCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

37.0

Weight (kDa)

6.29

Isoelectric Point (pI)

80.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 824
AccB7I CCANNNNNTGG 1 cut(s) 884
AciI CCGC 4 cut(s) 34, 210, 717, 914
AclWI GGATC 3 cut(s) 631, 661, 719
AcoI YGGCCR 2 cut(s) 718, 751
AcuI CTGAAG 1 cut(s) 828
AdeI CACNNNGTG 1 cut(s) 821
AfiI CCNNNNNNNGG 9 cut(s) 209, 620, 635, 650, 692, 716, 845, 884, 923
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 3 cut(s) 139, 319, 515
AjnI CCWGG 6 cut(s) 36, 91, 805, 817, 871, 922
AluBI AGCT 5 cut(s) 155, 453, 569, 611, 941
AluI AGCT 5 cut(s) 155, 453, 569, 611, 941
Alw21I GWGCWC 3 cut(s) 77, 157, 952
Alw26I GTCTC 3 cut(s) 220, 374, 536
Alw44I GTGCAC 1 cut(s) 948
AlwI GGATC 3 cut(s) 631, 661, 719
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 859
AoxI GGCC 2 cut(s) 718, 751
ApaLI GTGCAC 1 cut(s) 948
ApeKI GCWGC 7 cut(s) 207, 502, 566, 580, 594, 697, 996
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 6 cut(s) 31, 275, 836, 848, 875, 887
AsuHPI GGTGA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 859
AvaII GGWCC 6 cut(s) 31, 275, 836, 848, 875, 887
BaeGI GKGCMC 1 cut(s) 952
BalI TGGCCA 1 cut(s) 753
BanII GRGCYC 1 cut(s) 157
Bbv12I GWGCWC 3 cut(s) 77, 157, 952
BbvCI CCTCAGC 1 cut(s) 607
BbvI GCAGC 7 cut(s) 219, 514, 578, 592, 606, 709, 1008
BccI CCATC 1 cut(s) 524
BceAI ACGGC 1 cut(s) 730
BciT130I CCWGG 6 cut(s) 38, 93, 807, 819, 873, 924
BcoDI GTCTC 3 cut(s) 220, 374, 536
BfaI CTAG 1 cut(s) 993
BfmI CTRYAG 1 cut(s) 831
BfuAI ACCTGC 1 cut(s) 824
BisI GCNGC 8 cut(s) 208, 503, 567, 581, 595, 698, 718, 997
BlsI GCNGC 8 cut(s) 209, 504, 568, 582, 596, 699, 719, 998
Bme1390I CCNGG 6 cut(s) 38, 93, 807, 819, 873, 924
Bme18I GGWCC 6 cut(s) 31, 275, 836, 848, 875, 887
BmeT110I CYCGRG 1 cut(s) 859
BmgT120I GGNCC 6 cut(s) 31, 275, 836, 848, 875, 887
BmiI GGNNCC 1 cut(s) 1011
BmrFI CCNGG 6 cut(s) 38, 93, 807, 819, 873, 924
BmsI GCATC 4 cut(s) 347, 592, 688, 820
Bpu10I CCTNAGC 1 cut(s) 607
BpuEI CTTGAG 2 cut(s) 558, 633
Bsa29I ATCGAT 1 cut(s) 181
BsaJI CCNNGG 4 cut(s) 91, 619, 712, 806
BsaWI WCCGGW 2 cut(s) 45, 1006
Bsc4I CCNNNNNNNGG 9 cut(s) 209, 620, 635, 650, 692, 716, 845, 884, 923
Bse1I ACTGG 1 cut(s) 557
BseBI CCWGG 6 cut(s) 38, 93, 807, 819, 873, 924
BseCI ATCGAT 1 cut(s) 181
BseDI CCNNGG 4 cut(s) 91, 619, 712, 806
BseGI GGATG 8 cut(s) 341, 362, 396, 553, 679, 757, 784, 811
BseLI CCNNNNNNNGG 9 cut(s) 209, 620, 635, 650, 692, 716, 845, 884, 923
BseMII CTCAG 4 cut(s) 432, 440, 621, 975
BseNI ACTGG 1 cut(s) 557
BseRI GAGGAG 5 cut(s) 561, 648, 900, 909, 951
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 7 cut(s) 219, 514, 578, 592, 606, 709, 1008
BshFI GGCC 2 cut(s) 720, 753
BshVI ATCGAT 1 cut(s) 181
BsiHKAI GWGCWC 3 cut(s) 77, 157, 952
BsiHKCI CYCGRG 1 cut(s) 859
BsiSI CCGG 3 cut(s) 46, 686, 1007
BslI CCNNNNNNNGG 9 cut(s) 209, 620, 635, 650, 692, 716, 845, 884, 923
BsmAI GTCTC 3 cut(s) 220, 374, 536
BsnI GGCC 2 cut(s) 720, 753
BsoBI CYCGRG 1 cut(s) 859
Bsp1286I GDGCHC 3 cut(s) 77, 157, 952
Bsp143I GATC 3 cut(s) 623, 653, 724
BspACI CCGC 4 cut(s) 34, 210, 717, 914
BspANI GGCC 2 cut(s) 720, 753
BspCNI CTCAG 4 cut(s) 433, 441, 620, 976
BspDI ATCGAT 1 cut(s) 181
BspHI TCATGA 1 cut(s) 964
BspLI GGNNCC 1 cut(s) 1011
BspMAI CTGCAG 1 cut(s) 835
BspMI ACCTGC 1 cut(s) 824
BspPI GGATC 3 cut(s) 631, 661, 719
BsrI ACTGG 1 cut(s) 557
BssECI CCNNGG 4 cut(s) 91, 619, 712, 806
BssMI GATC 3 cut(s) 623, 653, 724
BssT1I CCWWGG 1 cut(s) 619
Bst2UI CCWGG 6 cut(s) 38, 93, 807, 819, 873, 924
BstAPI GCANNNNNTGC 1 cut(s) 956
BstC8I GCNNGC 4 cut(s) 385, 406, 490, 494
BstDEI CTNAG 4 cut(s) 441, 449, 607, 984
BstDSI CCRYGG 1 cut(s) 712
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 8 cut(s) 341, 362, 396, 553, 679, 757, 784, 811
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 3 cut(s) 626, 656, 727
BstMAI GTCTC 3 cut(s) 220, 374, 536
BstMBI GATC 3 cut(s) 623, 653, 724
BstMWI GCNNNNNNNGC 6 cut(s) 502, 575, 740, 830, 947, 956
BstNI CCWGG 6 cut(s) 38, 93, 807, 819, 873, 924
BstNSI RCATGY 4 cut(s) 243, 387, 496, 794
BstSCI CCNGG 6 cut(s) 36, 91, 805, 817, 871, 922
BstSFI CTRYAG 1 cut(s) 831
BstSLI GKGCMC 1 cut(s) 952
BstV1I GCAGC 7 cut(s) 219, 514, 578, 592, 606, 709, 1008
BstX2I RGATCY 2 cut(s) 623, 653
BstYI RGATCY 2 cut(s) 623, 653
Bsu15I ATCGAT 1 cut(s) 181
BsuRI GGCC 2 cut(s) 720, 753
BsuTUI ATCGAT 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 712
BtsCI GGATG 8 cut(s) 341, 362, 396, 553, 679, 757, 784, 811
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 229, 981
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 4 cut(s) 385, 406, 490, 494
CaiI CAGNNNCTG 1 cut(s) 884
CciI TCATGA 1 cut(s) 964
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 6 cut(s) 31, 275, 836, 848, 875, 887
ClaI ATCGAT 1 cut(s) 181
CseI GACGC 3 cut(s) 508, 586, 977
CsiI ACCWGGT 1 cut(s) 817
DdeI CTNAG 4 cut(s) 441, 449, 607, 984
DpnI GATC 3 cut(s) 625, 655, 726
DpnII GATC 3 cut(s) 623, 653, 724
DraIII CACNNNGTG 1 cut(s) 821
EaeI YGGCCR 2 cut(s) 718, 751
EciI GGCGGA 2 cut(s) 23, 903
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 157
Eco32I GATATC 1 cut(s) 641
Eco47I GGWCC 6 cut(s) 31, 275, 836, 848, 875, 887
Eco53kI GAGCTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 828
Eco88I CYCGRG 1 cut(s) 859
EcoICRI GAGCTC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoO109I RGGNCCY 1 cut(s) 848
EcoRII CCWGG 6 cut(s) 36, 91, 805, 817, 871, 922
EcoRV GATATC 1 cut(s) 641
EcoT14I CCWWGG 1 cut(s) 619
EcoT22I ATGCAT 3 cut(s) 362, 389, 681
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 619
FauNDI CATATG 1 cut(s) 691
Fnu4HI GCNGC 8 cut(s) 208, 503, 567, 581, 595, 698, 718, 997
FokI GGATG 8 cut(s) 348, 369, 383, 540, 666, 744, 771, 798
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 8 cut(s) 208, 503, 567, 581, 595, 698, 718, 997
FspBI CTAG 1 cut(s) 993
GlaI GCGC 1 cut(s) 579
GluI GCNGC 8 cut(s) 208, 503, 567, 581, 595, 698, 718, 997
HaeIII GGCC 2 cut(s) 720, 753
HapII CCGG 3 cut(s) 46, 686, 1007
HgaI GACGC 3 cut(s) 508, 586, 977
HhaI GCGC 1 cut(s) 580
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HinfI GANTC 4 cut(s) 49, 464, 857, 881
HpaII CCGG 3 cut(s) 46, 686, 1007
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 839, 950
Hpy188I TCNGA 1 cut(s) 450
Hpy188III TCNNGA 3 cut(s) 878, 903, 965
Hpy8I GTNNAC 2 cut(s) 839, 950
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 5 cut(s) 207, 288, 624, 852, 909
HpyCH4V TGCA 9 cut(s) 207, 348, 360, 387, 492, 496, 679, 833, 950
HpyF10VI GCNNNNNNNGC 6 cut(s) 502, 575, 740, 830, 947, 956
HpyF3I CTNAG 4 cut(s) 441, 449, 607, 984
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 3 cut(s) 623, 653, 724
LmnI GCTCC 6 cut(s) 574, 616, 739, 799, 946, 964
Lsp1109I GCAGC 7 cut(s) 219, 514, 578, 592, 606, 709, 1008
LweI GCATC 4 cut(s) 347, 592, 688, 820
MabI ACCWGGT 1 cut(s) 817
MaeI CTAG 1 cut(s) 993
MaeIII GTNAC 2 cut(s) 392, 588
MalI GATC 3 cut(s) 625, 655, 726
MboI GATC 3 cut(s) 623, 653, 724
MboII GAAGA 1 cut(s) 980
MflI RGATCY 2 cut(s) 623, 653
MhlI GDGCHC 3 cut(s) 77, 157, 952
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 1 cut(s) 397
Mox20I TGGCCA 1 cut(s) 753
Mph1103I ATGCAT 3 cut(s) 362, 389, 681
MscI TGGCCA 1 cut(s) 753
MseI TTAA 2 cut(s) 8, 27
MslI CAYNNNNRTG 1 cut(s) 789
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 3 cut(s) 46, 686, 1007
MspR9I CCNGG 6 cut(s) 38, 93, 807, 819, 873, 924
MvaI CCWGG 6 cut(s) 38, 93, 807, 819, 873, 924
MwoI GCNNNNNNNGC 6 cut(s) 502, 575, 740, 830, 947, 956
NdeI CATATG 1 cut(s) 691
NdeII GATC 3 cut(s) 623, 653, 724
NlaIV GGNNCC 1 cut(s) 1011
NmuCI GTSAC 1 cut(s) 588
NsiI ATGCAT 3 cut(s) 362, 389, 681
NspI RCATGY 4 cut(s) 243, 387, 496, 794
PaeI GCATGC 2 cut(s) 387, 496
PagI TCATGA 1 cut(s) 964
PciI ACATGT 1 cut(s) 239
PfeI GAWTC 3 cut(s) 49, 464, 881
PflMI CCANNNNNTGG 1 cut(s) 884
PkrI GCNGC 8 cut(s) 209, 504, 568, 582, 596, 699, 719, 998
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
PpuMI RGGWCCY 1 cut(s) 848
PscI ACATGT 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 848
Psp6I CCWGG 6 cut(s) 36, 91, 805, 817, 871, 922
PspGI CCWGG 6 cut(s) 36, 91, 805, 817, 871, 922
PspN4I GGNNCC 1 cut(s) 1011
PspPI GGNCC 6 cut(s) 31, 275, 836, 848, 875, 887
PspPPI RGGWCCY 1 cut(s) 848
PstI CTGCAG 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 2 cut(s) 623, 653
RseI CAYNNNNRTG 1 cut(s) 789
SacI GAGCTC 1 cut(s) 157
SaqAI TTAA 2 cut(s) 8, 27
SatI GCNGC 8 cut(s) 208, 503, 567, 581, 595, 698, 718, 997
Sau3AI GATC 3 cut(s) 623, 653, 724
Sau96I GGNCC 6 cut(s) 31, 275, 836, 848, 875, 887
SbfI CCTGCAGG 1 cut(s) 835
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 6 cut(s) 38, 93, 807, 819, 873, 924
SdaI CCTGCAGG 1 cut(s) 835
SduI GDGCHC 3 cut(s) 77, 157, 952
SexAI ACCWGGT 1 cut(s) 817
SfaNI GCATC 4 cut(s) 347, 592, 688, 820
SfcI CTRYAG 1 cut(s) 831
SinI GGWCC 6 cut(s) 31, 275, 836, 848, 875, 887
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 2 cut(s) 573, 648
SmoI CTYRAG 2 cut(s) 573, 648
SphI GCATGC 2 cut(s) 387, 496
Sse8387I CCTGCAGG 1 cut(s) 835
Sse9I AATT 1 cut(s) 24
SsiI CCGC 4 cut(s) 34, 210, 717, 914
SspMI CTAG 1 cut(s) 993
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 6 cut(s) 36, 91, 805, 817, 871, 922
StyI CCWWGG 1 cut(s) 619
TaqI TCGA 2 cut(s) 181, 600
TasI AATT 1 cut(s) 24
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 3 cut(s) 49, 464, 881
Tru1I TTAA 2 cut(s) 8, 27
Tru9I TTAA 2 cut(s) 8, 27
TscAI CASTG 2 cut(s) 236, 988
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 7 cut(s) 207, 502, 566, 580, 594, 697, 996
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 2 cut(s) 719, 981
TspRI CASTG 2 cut(s) 236, 988
Van91I CCANNNNNTGG 1 cut(s) 884
VneI GTGCAC 1 cut(s) 948
VpaK11BI GGWCC 6 cut(s) 31, 275, 836, 848, 875, 887
XagI CCTNNNNNAGG 1 cut(s) 618
XceI RCATGY 4 cut(s) 243, 387, 496, 794
XspI CTAG 1 cut(s) 993
Zsp2I ATGCAT 3 cut(s) 362, 389, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.