Prupe.2G174000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001223
Physical Location & Seq
Forward (+)
22017305 .. 22020156
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G174000.1

Sequence Viewer

Length: 969 bp
ATGGGGATTCAAGACCAGGTGGGGAAGATGCAGACCCGTCAGGGGTATAGGAATCTATGGCACGCCGATTTGATGGGCACCATGACTACCGATACTCCCTATTGTTGCTTTGCAGCTTTCTGTGGTCCATGTGTTTCTTACCTGCTGCGAAAACGAGCTCTTTATAATGATATGTCAAGGTACAGATGCTGTGCCGGGTATATGCCATGCAGTGGAAGGTGCGGCGAACGTCACTGCCCCGAATTGTGTCTTGGCACTGAGGTTTGCTTCTGCTTTGCAACTTCAGTTGCCTCGACACGCTTTCTAATACAAGATGAGTTCAATATACAGACAGCACCGTGCGATAACTGCATTATTGGATTTATGCTCTGCCTCAACCAACTTGCATGTATATGCTCCTTGATTGCTTGCATAACTGGAAGTGGGGAGCTCTCAGATATTTCCAGTGTGTTGAGCTGTATAGCCGACACGGTCTTTTGCTCGGTCTGTGCTTGCATGCAGACCCAGCACAAGCTTGAACTGGACAAAAGGGATGGCAAGCTTCCACAGCCAGTTATGGCAGTTCCTCCAATGCAGCAGATGTCTCGAATGGATCAGCCAATTCCTTATGCCGGATATCATCATCAGCGGCCAGTCTATTCACCTCCACCAACAGGATATCCAGGTCATGCGGGGTATCCAAATCAACATGCAGGATATCCACCAGCAGGATACCCACCAGCAGGCTATCCACCAGCAGGATATCCAAATCAACCTGCAGGCTATATGCCTCCACCAGCATATGGGCAACCAGTATATCCTCCAGGGCCTCCTCCTCCTGTGCGTCCTCCAGAATCTCCACATGGTATTTATTCTGCGGATTCCGGTGTTTTCCCTCCTGCAGTACCTCCTCCTCCACCTCCTGGTTATATCCCAGAATCTCCATCCGCACCTCCCGGACCGCCAAGGGATAAAACCTTCTCCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

34.85

Weight (kDa)

6.67

Isoelectric Point (pI)

64.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
Acc36I ACCTGC 2 cut(s) 150, 763
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 3 cut(s) 212, 782, 902
AciI CCGC 6 cut(s) 222, 628, 671, 857, 927, 941
AclWI GGATC 1 cut(s) 600
AcoI YGGCCR 1 cut(s) 629
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 182, 885
AfiI CCNNNNNNNGG 9 cut(s) 42, 212, 611, 653, 707, 722, 737, 782, 902
AgsI TTSAA 3 cut(s) 11, 322, 518
AjnI CCWGG 4 cut(s) 15, 661, 802, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 6 cut(s) 116, 158, 430, 456, 514, 541
AluI AGCT 6 cut(s) 116, 158, 430, 456, 514, 541
Alw21I GWGCWC 2 cut(s) 160, 432
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 1 cut(s) 600
AlwNI CAGNNNCTG 1 cut(s) 189
AoxI GGCC 2 cut(s) 629, 806
ApeKI GCWGC 3 cut(s) 113, 145, 574
AspS9I GGNCC 3 cut(s) 125, 806, 938
AsuC2I CCSGG 2 cut(s) 196, 936
AsuHPI GGTGA 1 cut(s) 633
AvaII GGWCC 2 cut(s) 125, 938
BaeGI GKGCMC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 2 cut(s) 160, 432
Bbv12I GWGCWC 2 cut(s) 160, 432
BbvI GCAGC 3 cut(s) 125, 132, 586
BccI CCATC 3 cut(s) 67, 527, 931
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 4 cut(s) 17, 663, 804, 903
BciVI GTATCC 2 cut(s) 687, 704
BcnI CCSGG 2 cut(s) 196, 936
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 1 cut(s) 967
BfmI CTRYAG 2 cut(s) 756, 879
BfuAI ACCTGC 2 cut(s) 150, 763
BfuI GTATCC 2 cut(s) 687, 704
BisI GCNGC 5 cut(s) 114, 146, 223, 575, 629
BlsI GCNGC 5 cut(s) 115, 147, 224, 576, 630
Bme1390I CCNGG 6 cut(s) 17, 196, 663, 804, 903, 936
Bme18I GGWCC 2 cut(s) 125, 938
BmgT120I GGNCC 3 cut(s) 125, 806, 938
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 6 cut(s) 17, 196, 663, 804, 903, 936
BmsI GCATC 2 cut(s) 18, 176
BpmI CTGGAG 2 cut(s) 786, 813
BpuMI CCSGG 2 cut(s) 196, 936
BsaJI CCNNGG 2 cut(s) 803, 944
BsaWI WCCGGW 1 cut(s) 863
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 9 cut(s) 42, 212, 611, 653, 707, 722, 737, 782, 902
Bse1I ACTGG 6 cut(s) 421, 444, 525, 551, 632, 791
BseBI CCWGG 4 cut(s) 17, 663, 804, 903
BseDI CCNNGG 2 cut(s) 803, 944
BseGI GGATG 2 cut(s) 538, 923
BseLI CCNNNNNNNGG 9 cut(s) 42, 212, 611, 653, 707, 722, 737, 782, 902
BseMII CTCAG 2 cut(s) 249, 447
BseNI ACTGG 6 cut(s) 421, 444, 525, 551, 632, 791
BseRI GAGGAG 5 cut(s) 801, 804, 879, 882, 952
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 3 cut(s) 125, 132, 586
BseYI CCCAGC 1 cut(s) 504
BshFI GGCC 2 cut(s) 631, 808
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 160, 432
BsiSI CCGG 4 cut(s) 195, 612, 864, 936
BslI CCNNNNNNNGG 9 cut(s) 42, 212, 611, 653, 707, 722, 737, 782, 902
BsmAI GTCTC 1 cut(s) 588
BsnI GGCC 2 cut(s) 631, 808
Bsp1286I GDGCHC 3 cut(s) 80, 160, 432
Bsp143I GATC 1 cut(s) 592
BspACI CCGC 6 cut(s) 222, 628, 671, 857, 927, 941
BspANI GGCC 2 cut(s) 631, 808
BspCNI CTCAG 2 cut(s) 250, 446
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 2 cut(s) 760, 883
BspMI ACCTGC 2 cut(s) 150, 763
BspPI GGATC 1 cut(s) 600
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 6 cut(s) 421, 444, 525, 551, 632, 791
BssECI CCNNGG 2 cut(s) 803, 944
BssMI GATC 1 cut(s) 592
BssT1I CCWWGG 1 cut(s) 944
Bst2UI CCWGG 4 cut(s) 17, 663, 804, 903
Bst4CI ACNGT 2 cut(s) 339, 472
BstC8I GCNNGC 7 cut(s) 63, 409, 493, 497, 539, 724, 760
BstDEI CTNAG 2 cut(s) 258, 433
BstF5I GGATG 2 cut(s) 538, 923
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 1 cut(s) 592
BstMWI GCNNNNNNNGC 3 cut(s) 348, 505, 547
BstNI CCWGG 4 cut(s) 17, 663, 804, 903
BstNSI RCATGY 3 cut(s) 390, 499, 692
BstSCI CCNGG 6 cut(s) 15, 194, 661, 802, 901, 934
BstSFI CTRYAG 2 cut(s) 756, 879
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 125, 132, 586
BsuI GTATCC 2 cut(s) 687, 704
BsuRI GGCC 2 cut(s) 631, 808
BtsCI GGATG 2 cut(s) 538, 923
BtsI GCAGTG 2 cut(s) 217, 232
BtsIMutI CAGTG 4 cut(s) 217, 232, 255, 451
BveI ACCTGC 2 cut(s) 150, 763
Cac8I GCNNGC 7 cut(s) 63, 409, 493, 497, 539, 724, 760
CaiI CAGNNNCTG 1 cut(s) 189
Cfr13I GGNCC 3 cut(s) 125, 806, 938
CpoI CGGWCCG 1 cut(s) 938
CseI GACGC 1 cut(s) 812
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 2 cut(s) 181, 884
CspI CGGWCCG 1 cut(s) 938
CviAII CATG 8 cut(s) 82, 129, 207, 387, 496, 668, 689, 842
CviQI GTAC 2 cut(s) 181, 884
DdeI CTNAG 2 cut(s) 258, 433
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
EaeI YGGCCR 1 cut(s) 629
Ecl136II GAGCTC 2 cut(s) 158, 430
Eco130I CCWWGG 1 cut(s) 944
Eco24I GRGCYC 2 cut(s) 160, 432
Eco32I GATATC 4 cut(s) 617, 659, 698, 743
Eco47I GGWCC 2 cut(s) 125, 938
Eco53kI GAGCTC 2 cut(s) 158, 430
Eco57I CTGAAG 1 cut(s) 267
EcoICRI GAGCTC 2 cut(s) 158, 430
EcoO109I RGGNCCY 1 cut(s) 806
EcoRII CCWGG 4 cut(s) 15, 661, 802, 901
EcoRV GATATC 4 cut(s) 617, 659, 698, 743
EcoT14I CCWWGG 1 cut(s) 944
EcoT38I GRGCYC 2 cut(s) 160, 432
ErhI CCWWGG 1 cut(s) 944
FaeI CATG 8 cut(s) 85, 132, 210, 390, 499, 671, 692, 845
FatI CATG 8 cut(s) 81, 128, 206, 386, 495, 667, 688, 841
FauI CCCGC 1 cut(s) 664
FauNDI CATATG 1 cut(s) 781
Fnu4HI GCNGC 5 cut(s) 114, 146, 223, 575, 629
FokI GGATG 2 cut(s) 545, 910
FriOI GRGCYC 2 cut(s) 160, 432
Fsp4HI GCNGC 5 cut(s) 114, 146, 223, 575, 629
FspBI CTAG 1 cut(s) 967
GluI GCNGC 5 cut(s) 114, 146, 223, 575, 629
GsaI CCCAGC 1 cut(s) 508
GsuI CTGGAG 2 cut(s) 786, 813
HaeIII GGCC 2 cut(s) 631, 808
HapII CCGG 4 cut(s) 195, 612, 864, 936
HgaI GACGC 1 cut(s) 812
Hin1II CATG 8 cut(s) 85, 132, 210, 390, 499, 671, 692, 845
HindIII AAGCTT 2 cut(s) 512, 539
HinfI GANTC 5 cut(s) 7, 52, 833, 860, 917
HpaII CCGG 4 cut(s) 195, 612, 864, 936
HphI GGTGA 1 cut(s) 633
Hpy188I TCNGA 1 cut(s) 436
Hpy188III TCNNGA 3 cut(s) 11, 585, 830
HpyAV CCTTC 2 cut(s) 210, 967
HpyCH4III ACNGT 2 cut(s) 339, 472
HpyCH4IV ACGT 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 505, 547
HpyF3I CTNAG 2 cut(s) 258, 433
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 8 cut(s) 85, 132, 210, 390, 499, 671, 692, 845
Kzo9I GATC 1 cut(s) 592
LmnI GCTCC 2 cut(s) 401, 427
Lsp1109I GCAGC 3 cut(s) 125, 132, 586
LweI GCATC 2 cut(s) 18, 176
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 1 cut(s) 967
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 3 cut(s) 80, 160, 432
MluCI AATT 2 cut(s) 242, 600
MslI CAYNNNNRTG 1 cut(s) 391
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 4 cut(s) 195, 612, 864, 936
MspR9I CCNGG 6 cut(s) 17, 196, 663, 804, 903, 936
MvaI CCWGG 4 cut(s) 17, 663, 804, 903
MwoI GCNNNNNNNGC 3 cut(s) 348, 505, 547
NciI CCSGG 2 cut(s) 196, 936
NdeI CATATG 1 cut(s) 781
NdeII GATC 1 cut(s) 592
NlaIII CATG 8 cut(s) 85, 132, 210, 390, 499, 671, 692, 845
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 3 cut(s) 390, 499, 692
PaeI GCATGC 1 cut(s) 499
PfeI GAWTC 5 cut(s) 7, 52, 833, 860, 917
PflFI GACNNNGTC 1 cut(s) 470
PflMI CCANNNNNTGG 3 cut(s) 212, 782, 902
PfoI TCCNGGA 1 cut(s) 934
PkrI GCNGC 5 cut(s) 115, 147, 224, 576, 630
PsiI TTATAA 1 cut(s) 165
Psp124BI GAGCTC 2 cut(s) 160, 432
Psp6I CCWGG 4 cut(s) 15, 661, 802, 901
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 4 cut(s) 15, 661, 802, 901
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 3 cut(s) 125, 806, 938
PstI CTGCAG 2 cut(s) 760, 883
PstNI CAGNNNCTG 1 cut(s) 189
PsyI GACNNNGTC 1 cut(s) 470
RsaI GTAC 2 cut(s) 182, 885
RsaNI GTAC 2 cut(s) 181, 884
RseI CAYNNNNRTG 1 cut(s) 391
Rsr2I CGGWCCG 1 cut(s) 938
RsrII CGGWCCG 1 cut(s) 938
SacI GAGCTC 2 cut(s) 160, 432
SatI GCNGC 5 cut(s) 114, 146, 223, 575, 629
Sau3AI GATC 1 cut(s) 592
Sau96I GGNCC 3 cut(s) 125, 806, 938
SbfI CCTGCAGG 1 cut(s) 760
ScrFI CCNGG 6 cut(s) 17, 196, 663, 804, 903, 936
SdaI CCTGCAGG 1 cut(s) 760
SduI GDGCHC 3 cut(s) 80, 160, 432
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 2 cut(s) 18, 176
SfcI CTRYAG 2 cut(s) 756, 879
SinI GGWCC 2 cut(s) 125, 938
SmiMI CAYNNNNRTG 1 cut(s) 391
SphI GCATGC 1 cut(s) 499
Sse8387I CCTGCAGG 1 cut(s) 760
Sse9I AATT 2 cut(s) 242, 600
SsiI CCGC 6 cut(s) 222, 628, 671, 857, 927, 941
SspMI CTAG 1 cut(s) 967
SstI GAGCTC 2 cut(s) 160, 432
StyD4I CCNGG 6 cut(s) 15, 194, 661, 802, 901, 934
StyI CCWWGG 1 cut(s) 944
TaaI ACNGT 2 cut(s) 339, 472
TaiI ACGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 293, 586
TaqII GACCGA 1 cut(s) 472
TasI AATT 2 cut(s) 242, 600
TauI GCSGC 2 cut(s) 225, 631
TfiI GAWTC 5 cut(s) 7, 52, 833, 860, 917
TscAI CASTG 4 cut(s) 217, 239, 262, 451
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 113, 145, 574
Tsp45I GTSAC 1 cut(s) 230
TspRI CASTG 4 cut(s) 217, 239, 262, 451
Tth111I GACNNNGTC 1 cut(s) 470
Van91I CCANNNNNTGG 3 cut(s) 212, 782, 902
VpaK11BI GGWCC 2 cut(s) 125, 938
XceI RCATGY 3 cut(s) 390, 499, 692
XspI CTAG 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.