Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Reverse (-)

29068343 .. 29070037

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCCGATTACTCTCAATTGTCTCCGAACCAAATTGGCAGAACAATCCATCTCTAAAATCTCTTACCCCTTCTATACACCTTCTCATGTCTCTTCTCTGTTTTCACTCAATCTTGATCCTCAGACAGCTCTCAGTTTCTCGGATTGGATCTCTCGGATACCAAACTTCAAGCACAACGTTACTTCATACGCGTCTTTGGTTACTCTTCTCTGCAGCCAGGAAATACCTTATGAGGTGCCTAAGATCACGATCTTAATGATAAAGAGCTGCAATTCAGTGCGAGACGCTTTGTTTGTTGTTGATTTCTGTAGGACAATGCGTAAAGGTGATAGCTTCGAGATTAAATATAAACTTACTCCTAAATGCTACAATAATCTGTTGAGTTCATTAGCTAGATTTGGATTAGTCGAAGAAATGAAGAGACTTTATACTGAAATGTTGGAGGATTTGGTTTCTCCAGACATATACACGTTTAACACATTGGTTAATGGGTATTGTAAGCTTGGATATGTAGTAGAAGCAAAGCAGTATGTGACTTGGCTTATTCAAGCTGGATGTGATCCTGATTATTTCACATATACTTCTTTTATTACCGGACATTGTCGAAGAAAAGAAGTCGATGCGGCTTTTAAGGTTTTTAAGGAGATGACTCAGAACGGTTGCCATAGAAATGAGGTTTCTTACACTCAGCTTATATATGGTCTATTTGAAGCAAAGAAGATCGATGAAGCTTTGAGCTTATTGGTGAAAATGAAAGATGACAATTGTTGTCCTAATGTTCGAACATACACAGTGCTTATAGATGCTTTGTGTGGATCAGGACAGAAGTCAGAAGCTATGAATTTGTTTAAGCAGATGTCAGAGAGTGGCATTAAGCCTGATGATTGTATGTATACTGTGCTTATTCAGAGTTTTTGTAGTGGAGATACACTTGATGAAGCAAGTGGATTGCTAGAACATATGTTGGAGAATGGGTTGATGCCAAATGTTATTACATACAATGCATTGATCAAAGGTTTTTGTAAGAAGAATGTGCACAAAGCAATGGGACTGCTTAGTAAGATGCTAGAGCAGAATTTGGTTCCAGACTTGATAACTTATAATACATTGATCGCTGGACAGTGTAGCTCTGGTAATTTAGATAGTGCATATAGATTGCTTAGTTTGATGGAAGAAAGTGGATTGGTTCCAAACCAGCGTACAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

402

Amino Acids

45.42

Weight (kDa)

6.34

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	122 - 167	1.5e-11	PPR repeat family
PPR_1	PF12854	151 - 176	2.6e-08	PPR repeat
PPR_2	PF13041	153 - 202	3.4e-12	PPR repeat family
TPR_24	PF23276	182 - 286	1.7e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	185 - 217	1.7e-10	PPR repeat
PPR_2	PF13041	188 - 236	2e-14	PPR repeat family
PPR	PF01535	191 - 221	2.2e-07	PPR repeat
PPR_long	PF17177	203 - 302	2.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	219 - 252	4.1e-06	PPR repeat
PPR_2	PF13041	224 - 271	1.7e-14	PPR repeat family
PPR_3	PF13812	226 - 270	1.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	255 - 287	2.4e-09	PPR repeat
PPR	PF01535	262 - 291	1.2e-06	PPR repeat
PPR_2	PF13041	263 - 306	1.4e-11	PPR repeat family
PPR_long	PF17177	278 - 394	4.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	282 - 340	1.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	290 - 321	2.8e-06	PPR repeat
PPR_2	PF13041	297 - 342	4.6e-12	PPR repeat family
PPR_1	PF12854	324 - 355	5.8e-10	PPR repeat
PPR_2	PF13041	342 - 375	7e-06	PPR repeat family
PPR_3	PF13812	351 - 398	3.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	359 - 391	1e-10	PPR repeat
PPR_2	PF13041	362 - 401	1.4e-09	PPR repeat family
PPR	PF01535	365 - 395	4.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1101
AccB1I	GGYRCC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	893
AccII	CGCG	1 cut(s)	191
AciI	CCGC	1 cut(s)	623
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	4 cut(s)	110, 155, 554, 823
AcsI	RAATTY	2 cut(s)	841, 1075
AfaI	GTAC	1 cut(s)	1201
AflIII	ACRYGT	2 cut(s)	189, 468
AgsI	TTSAA	3 cut(s)	169, 548, 710
AjnI	CCWGG	1 cut(s)	216
Alw21I	GWGCWC	1 cut(s)	1038
Alw26I	GTCTC	4 cut(s)	26, 94, 276, 415
Alw44I	GTGCAC	1 cut(s)	1034
AlwI	GGATC	4 cut(s)	110, 155, 554, 823
ApaLI	GTGCAC	1 cut(s)	1034
ApeKI	GCWGC	2 cut(s)	213, 267
ApoI	RAATTY	2 cut(s)	841, 1075
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AsuHPI	GGTGA	2 cut(s)	338, 757
AsuII	TTCGAA	1 cut(s)	781
BaeGI	GKGCMC	1 cut(s)	1038
BanI	GGYRCC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	1038
BbvI	GCAGC	2 cut(s)	225, 254
BccI	CCATC	2 cut(s)	56, 1162
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	150
BclI	TGATCA	1 cut(s)	1008
BcoDI	GTCTC	4 cut(s)	26, 94, 276, 415
BfaI	CTAG	3 cut(s)	393, 953, 1067
BfmI	CTRYAG	2 cut(s)	211, 307
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	214, 268, 624
BlsI	GCNGC	3 cut(s)	215, 269, 625
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	3 cut(s)	237, 1083, 1188
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	4 cut(s)	610, 793, 969, 1053
BoxI	GACNNNNGTC	1 cut(s)	826
BpmI	CTGGAG	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	781
Bsa29I	ATCGAT	1 cut(s)	723
BsaBI	GATNNNNATC	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	2 cut(s)	959, 989
Bse3DI	GCAATG	1 cut(s)	1050
Bse8I	GATNNNNATC	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	218
BseCI	ATCGAT	1 cut(s)	723
BseGI	GGATG	1 cut(s)	560
BseJI	GATNNNNATC	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	1050
BseMII	CTCAG	4 cut(s)	134, 145, 665, 701
BseSI	GKGCMC	1 cut(s)	1038
BseXI	GCAGC	2 cut(s)	225, 254
Bsh1236I	CGCG	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	723
BsiHKAI	GWGCWC	1 cut(s)	1038
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	1062
BsmAI	GTCTC	4 cut(s)	26, 94, 276, 415
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	1062
Bsp119I	TTCGAA	1 cut(s)	781
Bsp1286I	GDGCHC	1 cut(s)	1038
Bsp143I	GATC	9 cut(s)	115, 147, 243, 249, 559, 720, 815, 1008, 1110
BspACI	CCGC	1 cut(s)	623
BspCNI	CTCAG	4 cut(s)	133, 144, 664, 700
BspDI	ATCGAT	1 cut(s)	723
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	3 cut(s)	237, 1083, 1188
BspMAI	CTGCAG	1 cut(s)	215
BspPI	GGATC	4 cut(s)	110, 155, 554, 823
BspT104I	TTCGAA	1 cut(s)	781
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	1050
BssMI	GATC	9 cut(s)	115, 147, 243, 249, 559, 720, 815, 1008, 1110
BssNAI	GTATAC	1 cut(s)	894
Bst1107I	GTATAC	1 cut(s)	894
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	5 cut(s)	659, 793, 898, 1122, 1204
Bst6I	CTCTTC	3 cut(s)	97, 210, 413
BstBI	TTCGAA	1 cut(s)	781
BstDEI	CTNAG	7 cut(s)	120, 131, 240, 651, 687, 1055, 1160
BstF5I	GGATG	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	9 cut(s)	118, 150, 246, 252, 562, 723, 818, 1011, 1113
BstMAI	GTCTC	4 cut(s)	26, 94, 276, 415
BstMBI	GATC	9 cut(s)	115, 147, 243, 249, 559, 720, 815, 1008, 1110
BstNI	CCWGG	1 cut(s)	218
BstPAI	GACNNNNGTC	1 cut(s)	826
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	2 cut(s)	211, 307
BstSLI	GKGCMC	1 cut(s)	1038
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	225, 254
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BstZ17I	GTATAC	1 cut(s)	894
Bsu15I	ATCGAT	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	723
BtsCI	GGATG	1 cut(s)	560
BtsIMutI	CAGTG	3 cut(s)	282, 798, 1127
ClaI	ATCGAT	1 cut(s)	723
CseI	GACGC	2 cut(s)	180, 293
Csp6I	GTAC	1 cut(s)	1200
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	1200
DdeI	CTNAG	7 cut(s)	120, 131, 240, 651, 687, 1055, 1160
DpnI	GATC	9 cut(s)	117, 149, 245, 251, 561, 722, 817, 1010, 1112
DpnII	GATC	9 cut(s)	115, 147, 243, 249, 559, 720, 815, 1008, 1110
Eam1104I	CTCTTC	3 cut(s)	97, 210, 413
EarI	CTCTTC	3 cut(s)	97, 210, 413
EcoRII	CCWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	1006
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	1062
FatI	CATG	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	960
FbaI	TGATCA	1 cut(s)	1008
FblI	GTMKAC	1 cut(s)	893
Fnu4HI	GCNGC	3 cut(s)	214, 268, 624
FokI	GGATG	1 cut(s)	567
Fsp4HI	GCNGC	3 cut(s)	214, 268, 624
FspBI	CTAG	3 cut(s)	393, 953, 1067
GluI	GCNGC	3 cut(s)	214, 268, 624
GsuI	CTGGAG	1 cut(s)	441
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	2 cut(s)	180, 293
Hin1II	CATG	1 cut(s)	89
HindIII	AAGCTT	2 cut(s)	500, 729
HinfI	GANTC	1 cut(s)	649
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	2 cut(s)	338, 757
Hpy166II	GTNNAC	2 cut(s)	894, 1036
Hpy188I	TCNGA	8 cut(s)	26, 123, 142, 156, 654, 832, 862, 909
Hpy188III	TCNNGA	7 cut(s)	113, 247, 337, 458, 563, 819, 1085
Hpy8I	GTNNAC	2 cut(s)	894, 1036
HpyAV	CCTTC	2 cut(s)	79, 90
HpyCH4III	ACNGT	5 cut(s)	659, 793, 898, 1122, 1204
HpyCH4IV	ACGT	2 cut(s)	177, 470
HpyCH4V	TGCA	5 cut(s)	213, 270, 1004, 1036, 1148
HpyF3I	CTNAG	7 cut(s)	120, 131, 240, 651, 687, 1055, 1160
HpySE526I	ACGT	2 cut(s)	177, 470
Hsp92II	CATG	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	1008
Kzo9I	GATC	9 cut(s)	115, 147, 243, 249, 559, 720, 815, 1008, 1110
Lsp1109I	GCAGC	2 cut(s)	225, 254
LweI	GCATC	4 cut(s)	610, 793, 969, 1053
MaeI	CTAG	3 cut(s)	393, 953, 1067
MaeII	ACGT	2 cut(s)	177, 470
MaeIII	GTNAC	3 cut(s)	178, 199, 532
MalI	GATC	9 cut(s)	117, 149, 245, 251, 561, 722, 817, 1010, 1112
MboI	GATC	9 cut(s)	115, 147, 243, 249, 559, 720, 815, 1008, 1110
MboII	GAAGA	8 cut(s)	84, 197, 422, 430, 618, 730, 1039, 1184
MfeI	CAATTG	2 cut(s)	16, 763
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	1038
MluCI	AATT	7 cut(s)	16, 32, 271, 763, 841, 1075, 1135
MluI	ACGCGT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	2 cut(s)	420, 945
MnlI	CCTC	4 cut(s)	129, 226, 436, 667
Mph1103I	ATGCAT	1 cut(s)	1006
MseI	TTAA	8 cut(s)	254, 342, 474, 486, 630, 639, 849, 873
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	2 cut(s)	16, 763
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	191
NdeI	CATATG	1 cut(s)	960
NdeII	GATC	9 cut(s)	115, 147, 243, 249, 559, 720, 815, 1008, 1110
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	3 cut(s)	237, 1083, 1188
NmuCI	GTSAC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	1006
NspV	TTCGAA	1 cut(s)	781
PflFI	GACNNNGTC	1 cut(s)	600
PkrI	GCNGC	3 cut(s)	215, 269, 625
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PshAI	GACNNNNGTC	1 cut(s)	826
PsiI	TTATAA	1 cut(s)	1101
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	3 cut(s)	237, 1083, 1188
PstI	CTGCAG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	147
PsyI	GACNNNGTC	1 cut(s)	600
RsaI	GTAC	1 cut(s)	1201
RsaNI	GTAC	1 cut(s)	1200
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	8 cut(s)	254, 342, 474, 486, 630, 639, 849, 873
SatI	GCNGC	3 cut(s)	214, 268, 624
Sau3AI	GATC	9 cut(s)	115, 147, 243, 249, 559, 720, 815, 1008, 1110
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	1038
SfaNI	GCATC	4 cut(s)	610, 793, 969, 1053
SfcI	CTRYAG	2 cut(s)	211, 307
SfuI	TTCGAA	1 cut(s)	781
SmiMI	CAYNNNNRTG	1 cut(s)	669
Sse9I	AATT	7 cut(s)	16, 32, 271, 763, 841, 1075, 1135
SsiI	CCGC	1 cut(s)	623
SspMI	CTAG	3 cut(s)	393, 953, 1067
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	5 cut(s)	659, 793, 898, 1122, 1204
TaiI	ACGT	2 cut(s)	180, 473
TaqI	TCGA	6 cut(s)	336, 408, 604, 618, 723, 781
TasI	AATT	7 cut(s)	16, 32, 271, 763, 841, 1075, 1135
TauI	GCSGC	1 cut(s)	626
Tru1I	TTAA	8 cut(s)	254, 342, 474, 486, 630, 639, 849, 873
Tru9I	TTAA	8 cut(s)	254, 342, 474, 486, 630, 639, 849, 873
TscAI	CASTG	3 cut(s)	282, 798, 1127
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	2 cut(s)	213, 267
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	7 cut(s)	174, 375, 431, 741, 767, 854, 951
TspRI	CASTG	3 cut(s)	282, 798, 1127
Tth111I	GACNNNGTC	1 cut(s)	600
VneI	GTGCAC	1 cut(s)	1034
XapI	RAATTY	2 cut(s)	841, 1075
XmiI	GTMKAC	1 cut(s)	893
XspI	CTAG	3 cut(s)	393, 953, 1067
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.