Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Forward (+)

38620184 .. 38621263

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCACTGCTTGGTAAGATGCTTGATTGGAAACTCTCACCAAGCCTATATACATATAACTCATTAATCCATGGGCAGTGTGAAATAGGTCATTTGGAGAGTGCTTATAGGCTGCTTAATTTGATGAAAGAAAGTGGTTTGGTTCCTGACCAATGGTCTTACAGTTCTCTCATAGACACACTCTGTAAGAAGGGGAGACTGGAAGAAGCTCATGCCCTGTTTGATTCTCTCAAAGAGAAAGGCATAAAGTTGAATGACGTGATCTTTACTGCTTTGATTGATGGTTATTGCACGGTTGGGAAAATCGACAATGCCCATTCTTTGTTTGATAGAATGCTTGCAGAAGACTGTTTGCCGAACTCATACACTTACAATACCTTGATAGATGTGTTGTGCAAAGAAGGAAGACTGAAGGAAGCATTATCACTGGTAGAAAAGATGGTAAGTATTGGTGTGAAAGCTACAGTTCATACTTATACAATTCTAATTAAACAAATGTTGAAGGAAGGGGACTTTGACCATGCTCATGGGCTTTTAAACCAGATGGTTAGTTCTGGCAATCATCCTGACCTATTTACTTACACCACCTTTGTTCATGCATATTGCGGAATAGGAGATGTAGAAGAGGCAGAGAAATTGATGATTAAGATGAATGAAGAAGGAATTGTAGCAGATTCGTTGACTTACACATTACTAATTGATGGATATGGACGCATGGGATTAATTGATTGTGCATTTGATGTTCTTAAGCGCATGTTTGATGCTTCTTGTGATCGATCTTCGCATTATACCTATTCCTTTCTGATCAAACATCTTTCAAATGAAAAGTTGACAGAGACAAGGAATAATATAGTGGGAATGGATTTGATCTCAAATGTCTCCTTAATTGATGTTGCTGATGTGTGGAAGATATTGGATTTTGACATTGCTTTAGACCTTTTTGAAAAAATGACTGGACATGGTTGTGCACCCAGTACCAACACTAATGACAAACTTATAGTAGGTCTTTGCAAACAGAGGCGCTTGGAAGAAGCCCAGAAGTTATACAGTCATGAAAGAGAGGGAAGTTTCTCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

360

Amino Acids

40.43

Weight (kDa)

5.38

Isoelectric Point (pI)

25.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	5 - 61	3.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	12 - 43	1.7e-08	PPR repeat
PPR_2	PF13041	14 - 63	3.1e-15	PPR repeat family
PPR	PF01535	17 - 47	4.8e-06	PPR repeat
PPR_1	PF12854	46 - 76	4.3e-10	PPR repeat
PPR_2	PF13041	53 - 86	2.4e-07	PPR repeat family
PPR	PF01535	53 - 82	2.3e-07	PPR repeat
PPR_long	PF17177	67 - 170	1.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	73 - 131	2.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	80 - 112	3.9e-09	PPR repeat
PPR_2	PF13041	85 - 133	3.2e-16	PPR repeat family
PPR	PF01535	87 - 117	2.9e-06	PPR repeat
PPR_long	PF17177	107 - 255	1.4e-13	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	116 - 148	8.2e-14	PPR repeat
TPR_24	PF23276	120 - 212	3.2e-07	Fungal tetratrico peptide repeats
PPR	PF01535	122 - 152	2.8e-09	PPR repeat
PPR_2	PF13041	123 - 166	4.7e-14	PPR repeat family
PPR_2	PF13041	162 - 202	3.1e-09	PPR repeat family
PPR_3	PF13812	178 - 238	5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	188 - 217	3.7e-08	PPR repeat
PPR_2	PF13041	189 - 237	6.4e-13	PPR repeat family
PPR	PF01535	192 - 222	3.8e-06	PPR repeat
PPR_1	PF12854	221 - 252	1.1e-07	PPR repeat
PPR_2	PF13041	228 - 273	2.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	606
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	976
AflII	CTTAAG	1 cut(s)	746
AgsI	TTSAA	4 cut(s)	253, 502, 819, 944
AhdI	GACNNNNNGTC	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	259
AluBI	AGCT	2 cut(s)	209, 461
AluI	AGCT	2 cut(s)	209, 461
Alw21I	GWGCWC	1 cut(s)	970
Alw26I	GTCTC	3 cut(s)	190, 830, 883
Alw44I	GTGCAC	1 cut(s)	966
ApaLI	GTGCAC	1 cut(s)	966
ApeKI	GCWGC	1 cut(s)	112
AseI	ATTAAT	2 cut(s)	65, 722
AspLEI	GCGC	2 cut(s)	753, 1023
AsuHPI	GGTGA	1 cut(s)	30
BaeGI	GKGCMC	1 cut(s)	970
BbsI	GAAGAC	2 cut(s)	351, 412
Bbv12I	GWGCWC	1 cut(s)	970
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	4 cut(s)	275, 433, 538, 695
BclI	TGATCA	1 cut(s)	804
BcoDI	GTCTC	3 cut(s)	190, 830, 883
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	1024
BfrI	CTTAAG	1 cut(s)	746
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	144
BmrI	ACTGGG	2 cut(s)	966, 1069
BmsI	GCATC	2 cut(s)	9, 751
BmuI	ACTGGG	2 cut(s)	966, 1069
BpiI	GAAGAC	2 cut(s)	351, 412
Bsa29I	ATCGAT	1 cut(s)	775
BsaJI	CCNNGG	1 cut(s)	70
Bse1I	ACTGG	5 cut(s)	204, 432, 958, 972, 1075
Bse3DI	GCAATG	1 cut(s)	924
BseCI	ATCGAT	1 cut(s)	775
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	562
BseMI	GCAATG	1 cut(s)	924
BseNI	ACTGG	5 cut(s)	204, 432, 958, 972, 1075
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	970
BslFI	GGGAC	1 cut(s)	524
BsmAI	GTCTC	3 cut(s)	190, 830, 883
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	970
Bsp143I	GATC	5 cut(s)	261, 772, 776, 804, 867
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	1 cut(s)	606
BspDI	ATCGAT	1 cut(s)	775
BspHI	TCATGA	1 cut(s)	1051
BspLI	GGNNCC	1 cut(s)	144
BspTI	CTTAAG	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	5 cut(s)	204, 432, 958, 972, 1075
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	5 cut(s)	261, 772, 776, 804, 867
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	5 cut(s)	164, 295, 350, 466, 1049
Bst6I	CTCTTC	1 cut(s)	618
BstAFI	CTTAAG	1 cut(s)	746
BstC8I	GCNNGC	1 cut(s)	339
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	1024
BstHHI	GCGC	2 cut(s)	753, 1023
BstKTI	GATC	5 cut(s)	264, 775, 779, 807, 870
BstMAI	GTCTC	3 cut(s)	190, 830, 883
BstMBI	GATC	5 cut(s)	261, 772, 776, 804, 867
BstNSI	RCATGY	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	970
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	2 cut(s)	351, 412
BstXI	CCANNNNNNTGG	1 cut(s)	527
Bsu15I	ATCGAT	1 cut(s)	775
BsuTUI	ATCGAT	1 cut(s)	775
BtgI	CCRYGG	1 cut(s)	70
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	2 cut(s)	5, 83
BtsIMutI	CAGTG	3 cut(s)	5, 83, 425
Cac8I	GCNNGC	1 cut(s)	339
CciI	TCATGA	1 cut(s)	1051
CfoI	GCGC	2 cut(s)	753, 1023
ClaI	ATCGAT	1 cut(s)	775
CseI	GACGC	1 cut(s)	720
Csp6I	GTAC	1 cut(s)	975
CviAII	CATG	9 cut(s)	71, 212, 521, 527, 596, 715, 754, 959, 1052
CviJI	RGCY	6 cut(s)	45, 112, 209, 461, 532, 1034
CviKI_1	RGCY	6 cut(s)	45, 112, 209, 461, 532, 1034
CviQI	GTAC	1 cut(s)	975
DpnI	GATC	5 cut(s)	263, 774, 778, 806, 869
DpnII	GATC	5 cut(s)	261, 772, 776, 804, 867
DraI	TTTAAA	1 cut(s)	537
DriI	GACNNNNNGTC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	618
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	9 cut(s)	74, 215, 524, 530, 599, 718, 757, 962, 1055
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	9 cut(s)	70, 211, 520, 526, 595, 714, 753, 958, 1051
FbaI	TGATCA	1 cut(s)	804
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	1 cut(s)	549
Fsp4HI	GCNGC	1 cut(s)	113
GlaI	GCGC	2 cut(s)	752, 1022
GluI	GCNGC	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	1024
HgaI	GACGC	1 cut(s)	720
HhaI	GCGC	2 cut(s)	753, 1023
Hin1II	CATG	9 cut(s)	74, 215, 524, 530, 599, 718, 757, 962, 1055
Hin6I	GCGC	2 cut(s)	751, 1021
HinP1I	GCGC	2 cut(s)	751, 1021
HincII	GTYRAC	2 cut(s)	681, 831
HindII	GTYRAC	2 cut(s)	681, 831
HinfI	GANTC	2 cut(s)	224, 674
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	681, 831, 968
Hpy188I	TCNGA	1 cut(s)	804
Hpy188III	TCNNGA	3 cut(s)	146, 566, 1052
Hpy8I	GTNNAC	3 cut(s)	681, 831, 968
HpyAV	CCTTC	6 cut(s)	184, 395, 406, 496, 500, 653
HpyCH4III	ACNGT	5 cut(s)	164, 295, 350, 466, 1049
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	7 cut(s)	291, 341, 396, 599, 734, 968, 1011
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	9 cut(s)	74, 215, 524, 530, 599, 718, 757, 962, 1055
HspAI	GCGC	2 cut(s)	751, 1021
Ksp22I	TGATCA	1 cut(s)	804
Kzo9I	GATC	5 cut(s)	261, 772, 776, 804, 867
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	2 cut(s)	9, 751
MaeII	ACGT	1 cut(s)	258
MalI	GATC	5 cut(s)	263, 774, 778, 806, 869
MboI	GATC	5 cut(s)	261, 772, 776, 804, 867
MboII	GAAGA	8 cut(s)	215, 356, 417, 635, 668, 771, 919, 1040
MhlI	GDGCHC	1 cut(s)	970
MluCI	AATT	8 cut(s)	118, 480, 486, 635, 663, 696, 723, 885
MnlI	CCTC	3 cut(s)	619, 1011, 1054
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	8 cut(s)	65, 117, 489, 536, 645, 722, 747, 884
MslI	CAYNNNNRTG	2 cut(s)	525, 963
MspCI	CTTAAG	1 cut(s)	746
Mva1269I	GAATGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	5 cut(s)	261, 772, 776, 804, 867
NlaIII	CATG	9 cut(s)	74, 215, 524, 530, 599, 718, 757, 962, 1055
NlaIV	GGNNCC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	757
PagI	TCATGA	1 cut(s)	1051
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	224, 674
PkrI	GCNGC	1 cut(s)	114
PshBI	ATTAAT	2 cut(s)	65, 722
PspN4I	GGNNCC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	976
RsaNI	GTAC	1 cut(s)	975
RseI	CAYNNNNRTG	2 cut(s)	525, 963
SaqAI	TTAA	8 cut(s)	65, 117, 489, 536, 645, 722, 747, 884
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	5 cut(s)	261, 772, 776, 804, 867
SduI	GDGCHC	1 cut(s)	970
SfaNI	GCATC	2 cut(s)	9, 751
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	2 cut(s)	525, 963
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	8 cut(s)	118, 480, 486, 635, 663, 696, 723, 885
SsiI	CCGC	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	5 cut(s)	164, 295, 350, 466, 1049
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	306, 775
TasI	AATT	8 cut(s)	118, 480, 486, 635, 663, 696, 723, 885
TfiI	GAWTC	2 cut(s)	224, 674
Tru1I	TTAA	8 cut(s)	65, 117, 489, 536, 645, 722, 747, 884
Tru9I	TTAA	8 cut(s)	65, 117, 489, 536, 645, 722, 747, 884
TscAI	CASTG	3 cut(s)	12, 83, 432
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	7 cut(s)	140, 458, 584, 665, 669, 837, 1068
TspRI	CASTG	3 cut(s)	12, 83, 432
Vha464I	CTTAAG	1 cut(s)	746
VneI	GTGCAC	1 cut(s)	966
VspI	ATTAAT	2 cut(s)	65, 722
XceI	RCATGY	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.