Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Reverse (-)

15775766 .. 15778459

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2694 bp

ATGAGGAGAAAACCCATTCTCCCAAGCAGCAGCAGCAGGGCCTTGTTTCTCCACCTCAATTCCAAACGCTTCTTCTCCTTCACTGCTTCCGCTTCCGCTTCTGAGCCAGTCCTCGACGATCTCCCCTCTCAGCTCTTGTCCATCCTCTCCCAACCCAATTGGCAAAGACACCCCTCCCTCAAACCCCTAATCCCCTCCATATCCCCCTCCCATGTCTCCTCCCTCTTCTCCCTCAACCACCACCTCCCCCCCCAAACCGCCCTCGCCTTCTTCAACTGGATCGCCCTCAAACCCAACTTCACCCACTCCGTCCACTCCCACTCTTCTCTCCTCTCCCTTCTCCTCCCCAACCCTTCCTTCCTCTCCGTCGCCGAAAAGATCCGCATTTCCATGATCAAGTCCTCCACCTGCCCCCCTGACGCCCTCTTCGTCCTCCACCATCTCCGCTACCTGAACAAGACCCACTTCAAGCTCACCCTCAGGTCATACAACTTTCTTCTCATGTCATTGTCCAAGTTTTCGCTGTTTGATGATTTAAAAACTGTGTATATGGAGATGTTGGAGGATAAGGTTTCCCCCAATTTGCATACATTTAACACCATGGTCAATGCTTATTGTAAATTGGGGAATTTGGCTGAGGCAGAGGTGTATTTCAGTAAGATAGGGCAGGCCGGTTTGCGGCCTGATACTTTTAGCTACACGTCTTTGATACTGGGGCATTGTAGGAATAAGGATGTGGACAGTGCTTATAGGGTGTTTAGGGTAATGCCGCAGAAGGAGTGTCGGAGAAATGAGGTTTCGTATACCAATCTGATACATGGGTTGTGTGAGGCGGATCGGATTGGTGAGGCTTTAAAGTTGTTTTTGCAGATGGGGGAGGATGATTGTCAGCCGACTGTCCGCACGTTTACAGTTCTTATTTCTGCATTTTGTAGATTGGGGAAGAAATCAGAAGCAATGAAGTTGTTTAGAGAGATGAGGGAAAAGGGTTGTCAACCGAATGCTCATACTTATACCGTGCTTATTGATAGTATGTGCAAGGAGAATAAGCTAGATGAGGCTAGGAGGTTGCTGAATGAGATGTTGGAGAAACGGTTGGTTCCTACTGTTGTCACATACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCAGTTGAGGCTGCAATTGATGTTAAGGCTTTGATGGAATCAAATAAATGTTGTCCAAATGCTCGAACGTACAATGAATTAATTTTTGGGTTTTGTAAAAGGAAAGATGTAAACCAGGCGATGGCATTGCTCGCCAAGATGCTCGATCTGAAGCTCTCACCTAGTGTGATTACGTATAACTCATTAATACATGGCCACTGTAAAGCAGGTGATTTAGACTGTGCTTATAGGTTGCTTGATTTGATGAAGGACAGTGGTTTGGTTCCTGACCAGTGGACCTATAGTGTTTTTATAGACAGTCTTTGTAAGAGTGGGAGACTAGAAGAAGCTCATGCCCTGTTTGATTCTCTTAAGGAGAAAGGTGTAAAGTCAAATGAAGTGACATTTACTGCTTTGATTGATGGTTACTGCAAGGTGGGGAAAATTAATGATGCCCATTCCTTGTTTGATGGGATGCTTACAGAGGGCTGTAACCCGAACACATGCACTTACAATACCTTGGTAGATGGATTGTGCAAAGAAGGAAAATTGCAGGATGCAATATTACTGGTGGAGAAGATGTTAAGTACGGGCCTGACGCATGCACCACATACTTATTCTATACTGATCAAACATATGCTGAAAGAAGGGGACTTCGGCCATGCTCATAGACTGTTCAACCAGATGGTTTGTTCTGGTAGTAAACCGGACGTATTTATTTACACTTCGTTTATTCATGCATATTGCAGCATAGGGGATATAGAAGAGGCAGAAAAGCTGATGGTTAAGATGAGTGAAGAAGGAATTAGAGCAGATTCGTTGACGTACACATTATTGATTAATACATATGGACGTATGGGACTACTAGATTCTGCATTTGGTGTTCTTAAGCGCATGTTTGATGCTTGCTGCGATCCTTCTCACTATACCTATTCTTTCCTGATCAAACATCTTTTGCGCTCGAAGACGAATGACGATATAGTGAGACTAGATTTGGCCTCAAGCTTCATTGATATTGCTGATGTATGGAAGACAATGGATTATCAAAATGCTTTAGATCTGTTTGACAAGATGGTTGAACATGGCTGTGCACCCAGTGGCAACACATATGAAAAGCTTATAATAGGTCTTTGCAAAGAGGGGCGCTTGGAAGTAGCCCAGAGGCTATATGTTCATATGAGAGATGGGCGGATTTCTCCCAGCCAGGATATTTATCATTCTCTTATTAATTGTTGCTGTCAGTTGCAAGTGTATGGAGAGGCGGCAAACCTGCTGGATACGATGATTGAGGATGGTTATTTACCAACATTAGAGTCTTCCAAGTTGCTTGTATGTGGGCTATTCATTGAGGAGAATATCGAGAAGGCAAAAGCCGTTTTCTGTAGTTTGCTCCGTTGTGAGTATAACTTTGATGAAGTAGCTTGGAAAGTTCTCCATGATGGTTTACTTAAGAGGGGTCTTGTCGATAGATGCTCTGAGTTGATAACCATCATGGAGCAGATGGGTTGCAAGCTTCATCCTCAGACATATTCAATGCTGATTGAGGGAATTGATGGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

897

Amino Acids

101.2

Weight (kDa)

6.7

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	162 - 207	3e-07	PPR repeat family
PPR_1	PF12854	191 - 218	3.2e-07	PPR repeat
PPR_2	PF13041	193 - 242	7.7e-11	PPR repeat family
PPR_1	PF12854	225 - 256	2.9e-09	PPR repeat
PPR_2	PF13041	228 - 276	1.8e-13	PPR repeat family
PPR_1	PF12854	259 - 291	7.4e-07	PPR repeat
PPR_2	PF13041	264 - 312	2.7e-14	PPR repeat family
PPR_3	PF13812	287 - 344	1.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	295 - 327	1.9e-10	PPR repeat
PPR	PF01535	302 - 331	3.3e-09	PPR repeat
PPR_2	PF13041	302 - 347	4e-17	PPR repeat family
PPR_long	PF17177	318 - 404	1.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	321 - 380	3.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	329 - 361	1.2e-12	PPR repeat
PPR	PF01535	337 - 365	6.2e-07	PPR repeat
PPR_2	PF13041	337 - 374	3.2e-10	PPR repeat family
PPR_3	PF13812	356 - 412	2.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	365 - 394	1.1e-09	PPR repeat
PPR_2	PF13041	368 - 417	4.8e-16	PPR repeat family
PPR	PF01535	371 - 401	6.2e-06	PPR repeat
PPR_long	PF17177	396 - 480	2.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	401 - 431	1.1e-08	PPR repeat
PPR_2	PF13041	403 - 451	4.5e-13	PPR repeat family
PPR_3	PF13812	427 - 483	7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	436 - 467	3e-13	PPR repeat
PPR_2	PF13041	438 - 487	6.8e-17	PPR repeat family
PPR	PF01535	441 - 471	4.9e-08	PPR repeat
PPR_1	PF12854	470 - 500	2.4e-09	PPR repeat
PPR	PF01535	477 - 506	7.2e-07	PPR repeat
PPR_2	PF13041	481 - 522	1.6e-12	PPR repeat family
PPR_long	PF17177	491 - 595	1.5e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	494 - 605	1.3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	497 - 552	6.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	504 - 536	1.8e-10	PPR repeat
PPR_2	PF13041	509 - 557	9e-18	PPR repeat family
PPR	PF01535	511 - 541	8.5e-08	PPR repeat
PPR_1	PF12854	540 - 571	1e-13	PPR repeat
PPR_2	PF13041	543 - 589	3.9e-11	PPR repeat family
PPR	PF01535	547 - 575	3.6e-06	PPR repeat
PPR_2	PF13041	582 - 619	1.1e-07	PPR repeat family
PPR_3	PF13812	601 - 662	2.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	610 - 642	5e-09	PPR repeat
PPR_2	PF13041	613 - 660	1e-12	PPR repeat family
PPR	PF01535	617 - 646	2.1e-06	PPR repeat
PPR_3	PF13812	637 - 693	7.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	653 - 695	9.4e-07	PPR repeat family
PPR_long	PF17177	717 - 852	4.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	724 - 756	7.5e-06	PPR repeat family
PPR_3	PF13812	731 - 789	7.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	746 - 791	1.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2252
AarI	CACCTGC	2 cut(s)	416, 1349
Acc36I	ACCTGC	3 cut(s)	416, 1349, 2409
AccB7I	CCANNNNNTGG	1 cut(s)	1273
AccI	GTMKAC	1 cut(s)	803
AclWI	GGATC	4 cut(s)	287, 373, 843, 2039
AcoI	YGGCCR	2 cut(s)	1345, 1789
AcsI	RAATTY	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	1322
AcyI	GRCGYC	1 cut(s)	420
AdeI	CACNNNGTG	2 cut(s)	1316, 2228
AfaI	GTAC	3 cut(s)	1223, 1720, 1958
AfiI	CCNNNNNNNGG	2 cut(s)	678, 1273
AflII	CTTAAG	3 cut(s)	1502, 2018, 2579
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	5 cut(s)	274, 469, 1810, 2210, 2664
AjiI	CACGTC	1 cut(s)	702
AjnI	CCWGG	2 cut(s)	1266, 2334
AjuI	GAANNNNNNNTTGG	8 cut(s)	56, 88, 341, 373, 1067, 1099, 1221, 1253
Alw21I	GWGCWC	1 cut(s)	2224
Alw26I	GTCTC	3 cut(s)	220, 1462, 2110
Alw44I	GTGCAC	1 cut(s)	2220
AlwI	GGATC	4 cut(s)	287, 373, 843, 2039
AoxI	GGCC	7 cut(s)	39, 669, 680, 1345, 1723, 1789, 2127
ApaLI	GTGCAC	1 cut(s)	2220
ApeKI	GCWGC	6 cut(s)	27, 30, 33, 1163, 1878, 2040
ApoI	RAATTY	1 cut(s)	628
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AseI	ATTAAT	5 cut(s)	1232, 1337, 1578, 1971, 2358
AspLEI	GCGC	3 cut(s)	2025, 2091, 2277
AspS9I	GGNCC	3 cut(s)	39, 1428, 1723
AsuHPI	GGTGA	5 cut(s)	292, 466, 857, 1302, 1373
AvaII	GGWCC	1 cut(s)	1428
AxyI	CCTNAGG	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	2224
BaeI	ACNNNNGTAYC	2 cut(s)	806, 839
BalI	TGGCCA	1 cut(s)	1347
BbsI	GAAGAC	3 cut(s)	2102, 2168, 2439
Bbv12I	GWGCWC	1 cut(s)	2224
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	6 cut(s)	39, 42, 45, 1150, 1890, 2027
BceAI	ACGGC	1 cut(s)	2489
BcgI	CGANNNNNNTGC	2 cut(s)	1261, 1295
BciT130I	CCWGG	2 cut(s)	1268, 2336
BciVI	GTATCC	1 cut(s)	2401
BclI	TGATCA	3 cut(s)	393, 1758, 2073
BcoDI	GTCTC	3 cut(s)	220, 1462, 2110
BfaI	CTAG	6 cut(s)	1052, 1062, 1314, 1472, 1997, 2120
BfmI	CTRYAG	2 cut(s)	1432, 2512
BfoI	RGCGCY	1 cut(s)	2278
BfrI	CTTAAG	3 cut(s)	1502, 2018, 2579
BfuAI	ACCTGC	3 cut(s)	416, 1349, 2409
BfuI	GTATCC	1 cut(s)	2401
BglII	AGATCT	1 cut(s)	2188
BisI	GCNGC	9 cut(s)	28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
BlsI	GCNGC	9 cut(s)	29, 32, 35, 681, 771, 1165, 1880, 2042, 2395
Bme1390I	CCNGG	2 cut(s)	1268, 2336
Bme18I	GGWCC	1 cut(s)	1428
BmgBI	CACGTC	1 cut(s)	702
BmgT120I	GGNCC	3 cut(s)	39, 1428, 1723
BmiI	GGNNCC	2 cut(s)	1101, 1416
BmrFI	CCNGG	2 cut(s)	1268, 2336
BmrI	ACTGGG	2 cut(s)	722, 2220
BmsI	GCATC	6 cut(s)	1281, 1573, 1596, 1678, 2023, 2591
BmuI	ACTGGG	2 cut(s)	722, 2220
BpiI	GAAGAC	3 cut(s)	2102, 2168, 2439
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	2116
BsaAI	YACGTR	1 cut(s)	1326
BsaBI	GATNNNNATC	2 cut(s)	2343, 2618
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	600, 1650
BsaWI	WCCGGW	1 cut(s)	1837
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 1079, 1109, 1697, 1727
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 1273
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	6 cut(s)	107, 281, 717, 1423, 1704, 2226
Bse21I	CCTNAGG	1 cut(s)	479
Bse3DI	GCAATG	2 cut(s)	963, 1277
Bse8I	GATNNNNATC	2 cut(s)	2343, 2618
BseBI	CCWGG	2 cut(s)	1268, 2336
BseDI	CCNNGG	2 cut(s)	600, 1650
BseGI	GGATG	7 cut(s)	141, 739, 886, 1611, 1693, 2428, 2647
BseJI	GATNNNNATC	2 cut(s)	2343, 2618
BseLI	CCNNNNNNNGG	2 cut(s)	678, 1273
BseMI	GCAATG	2 cut(s)	963, 1277
BseMII	CTCAG	6 cut(s)	93, 143, 493, 627, 2598, 2666
BseNI	ACTGG	6 cut(s)	107, 281, 717, 1423, 1704, 2226
BseRI	GAGGAG	5 cut(s)	19, 208, 320, 332, 2495
BseSI	GKGCMC	1 cut(s)	2224
BseXI	GCAGC	6 cut(s)	39, 42, 45, 1150, 1890, 2027
BseYI	CCCAGC	1 cut(s)	2330
BshFI	GGCC	7 cut(s)	41, 671, 682, 1347, 1725, 1791, 2129
BsiHKAI	GWGCWC	1 cut(s)	2224
BsiSI	CCGG	2 cut(s)	672, 1838
BslFI	GGGAC	2 cut(s)	1796, 2004
BslI	CCNNNNNNNGG	2 cut(s)	678, 1273
BsmAI	GTCTC	3 cut(s)	220, 1462, 2110
BsmFI	GGGAC	2 cut(s)	1796, 2004
BsmI	GAATGC	1 cut(s)	1006
BsnI	GGCC	7 cut(s)	41, 671, 682, 1347, 1725, 1791, 2129
Bsp1286I	GDGCHC	1 cut(s)	2224
Bsp19I	CCATGG	1 cut(s)	600
BspANI	GGCC	7 cut(s)	41, 671, 682, 1347, 1725, 1791, 2129
BspCNI	CTCAG	6 cut(s)	94, 142, 492, 628, 2599, 2665
BspLI	GGNNCC	2 cut(s)	1101, 1416
BspMI	ACCTGC	3 cut(s)	416, 1349, 2409
BspPI	GGATC	4 cut(s)	287, 373, 843, 2039
BspTI	CTTAAG	3 cut(s)	1502, 2018, 2579
BsrDI	GCAATG	2 cut(s)	963, 1277
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	6 cut(s)	107, 281, 717, 1423, 1704, 2226
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	2 cut(s)	600, 1650
BssNAI	GTATAC	1 cut(s)	804
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	600, 1650
Bst1107I	GTATAC	1 cut(s)	804
Bst2UI	CCWGG	2 cut(s)	1268, 2336
Bst6I	CTCTTC	4 cut(s)	230, 328, 431, 1890
BstACI	GRCGYC	1 cut(s)	420
BstAFI	CTTAAG	3 cut(s)	1502, 2018, 2579
BstBAI	YACGTR	1 cut(s)	1326
BstC8I	GCNNGC	5 cut(s)	669, 1284, 1734, 2038, 2642
BstDEI	CTNAG	6 cut(s)	102, 129, 479, 636, 2607, 2652
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	7 cut(s)	141, 739, 886, 1611, 1693, 2428, 2647
BstH2I	RGCGCY	1 cut(s)	2278
BstHHI	GCGC	3 cut(s)	2025, 2091, 2277
BstMAI	GTCTC	3 cut(s)	220, 1462, 2110
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 1160, 1283
BstNI	CCWGG	2 cut(s)	1268, 2336
BstNSI	RCATGY	3 cut(s)	1638, 1736, 2029
BstSCI	CCNGG	2 cut(s)	1266, 2334
BstSFI	CTRYAG	2 cut(s)	1432, 2512
BstSLI	GKGCMC	1 cut(s)	2224
BstSNI	TACGTA	1 cut(s)	1326
BstV1I	GCAGC	6 cut(s)	39, 42, 45, 1150, 1890, 2027
BstV2I	GAAGAC	3 cut(s)	2102, 2168, 2439
BstX2I	RGATCY	2 cut(s)	378, 2188
BstYI	RGATCY	2 cut(s)	378, 2188
BstZ17I	GTATAC	1 cut(s)	804
Bsu36I	CCTNAGG	1 cut(s)	479
BsuI	GTATCC	1 cut(s)	2401
BsuRI	GGCC	7 cut(s)	41, 671, 682, 1347, 1725, 1791, 2129
BtgI	CCRYGG	1 cut(s)	600
BtgZI	GCGATG	1 cut(s)	1286
BtrI	CACGTC	1 cut(s)	702
BtsCI	GGATG	7 cut(s)	141, 739, 886, 1611, 1693, 2428, 2647
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	6 cut(s)	81, 748, 1348, 1411, 1430, 2233
BveI	ACCTGC	3 cut(s)	416, 1349, 2409
Cac8I	GCNNGC	5 cut(s)	669, 1284, 1734, 2038, 2642
CfoI	GCGC	3 cut(s)	2025, 2091, 2277
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	3 cut(s)	39, 1428, 1723
CseI	GACGC	2 cut(s)	428, 1738
Csp6I	GTAC	3 cut(s)	1222, 1719, 1957
CviQI	GTAC	3 cut(s)	1222, 1719, 1957
DdeI	CTNAG	6 cut(s)	102, 129, 479, 636, 2607, 2652
DraI	TTTAAA	2 cut(s)	537, 855
DraIII	CACNNNGTG	2 cut(s)	1316, 2228
EaeI	YGGCCR	2 cut(s)	1345, 1789
Eam1104I	CTCTTC	4 cut(s)	230, 328, 431, 1890
EarI	CTCTTC	4 cut(s)	230, 328, 431, 1890
EciI	GGCGGA	2 cut(s)	848, 2335
Eco105I	TACGTA	1 cut(s)	1326
Eco130I	CCWWGG	2 cut(s)	600, 1650
Eco47I	GGWCC	1 cut(s)	1428
Eco57I	CTGAAG	1 cut(s)	1322
Eco81I	CCTNAGG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	1266, 2334
EcoT14I	CCWWGG	2 cut(s)	600, 1650
EcoT22I	ATGCAT	2 cut(s)	1126, 1873
ErhI	CCWWGG	2 cut(s)	600, 1650
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	1796, 2004
FauNDI	CATATG	4 cut(s)	1767, 1978, 2239, 2307
FbaI	TGATCA	3 cut(s)	393, 1758, 2073
FblI	GTMKAC	1 cut(s)	803
Fnu4HI	GCNGC	9 cut(s)	28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
FokI	GGATG	7 cut(s)	128, 746, 893, 1618, 1700, 2435, 2634
Fsp4HI	GCNGC	9 cut(s)	28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
FspBI	CTAG	6 cut(s)	1052, 1062, 1314, 1472, 1997, 2120
GlaI	GCGC	3 cut(s)	2024, 2090, 2276
GluI	GCNGC	9 cut(s)	28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
GsaI	CCCAGC	1 cut(s)	2334
HaeII	RGCGCY	1 cut(s)	2278
HaeIII	GGCC	7 cut(s)	41, 671, 682, 1347, 1725, 1791, 2129
HapII	CCGG	2 cut(s)	672, 1838
HgaI	GACGC	2 cut(s)	428, 1738
HhaI	GCGC	3 cut(s)	2025, 2091, 2277
Hin1I	GRCGYC	1 cut(s)	420
Hin6I	GCGC	3 cut(s)	2023, 2089, 2275
HinP1I	GCGC	3 cut(s)	2023, 2089, 2275
HincII	GTYRAC	2 cut(s)	995, 1953
HindII	GTYRAC	2 cut(s)	995, 1953
HindIII	AAGCTT	3 cut(s)	2134, 2246, 2642
HinfI	GANTC	5 cut(s)	1190, 1496, 1946, 2000, 2444
HpaII	CCGG	2 cut(s)	672, 1838
HphI	GGTGA	5 cut(s)	292, 466, 857, 1302, 1373
Hpy188I	TCNGA	8 cut(s)	103, 786, 813, 840, 952, 1302, 2608, 2655
Hpy188III	TCNNGA	3 cut(s)	1418, 2071, 2491
Hpy99I	CGWCG	2 cut(s)	119, 371
HpyCH4IV	ACGT	7 cut(s)	701, 905, 1220, 1325, 1842, 1955, 1984
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 1160, 1283
HpyF3I	CTNAG	6 cut(s)	102, 129, 479, 636, 2607, 2652
HpySE526I	ACGT	7 cut(s)	701, 905, 1220, 1325, 1842, 1955, 1984
Hsp92I	GRCGYC	1 cut(s)	420
HspAI	GCGC	3 cut(s)	2023, 2089, 2275
Ksp22I	TGATCA	3 cut(s)	393, 1758, 2073
LmnI	GCTCC	3 cut(s)	1151, 2526, 2626
Lsp1109I	GCAGC	6 cut(s)	39, 42, 45, 1150, 1890, 2027
LweI	GCATC	6 cut(s)	1281, 1573, 1596, 1678, 2023, 2591
MaeI	CTAG	6 cut(s)	1052, 1062, 1314, 1472, 1997, 2120
MaeII	ACGT	7 cut(s)	701, 905, 1220, 1325, 1842, 1955, 1984
MaeIII	GTNAC	4 cut(s)	1111, 1531, 1556, 1622
MfeI	CAATTG	2 cut(s)	157, 1167
MflI	RGATCY	2 cut(s)	378, 2188
MhlI	GDGCHC	1 cut(s)	2224
MlsI	TGGCCA	1 cut(s)	1347
MluNI	TGGCCA	1 cut(s)	1347
MlyI	GAGTC	1 cut(s)	2453
MmeI	TCCRAC	3 cut(s)	540, 764, 1065
Mox20I	TGGCCA	1 cut(s)	1347
Mph1103I	ATGCAT	2 cut(s)	1126, 1873
MscI	TGGCCA	1 cut(s)	1347
MslI	CAYNNNNRTG	2 cut(s)	389, 2217
Msp20I	TGGCCA	1 cut(s)	1347
MspCI	CTTAAG	3 cut(s)	1502, 2018, 2579
MspI	CCGG	2 cut(s)	672, 1838
MspR9I	CCNGG	2 cut(s)	1268, 2336
MunI	CAATTG	2 cut(s)	157, 1167
Mva1269I	GAATGC	1 cut(s)	1006
MvaI	CCWGG	2 cut(s)	1268, 2336
MwoI	GCNNNNNNNGC	3 cut(s)	33, 1160, 1283
NcoI	CCATGG	1 cut(s)	600
NdeI	CATATG	4 cut(s)	1767, 1978, 2239, 2307
NlaIV	GGNNCC	2 cut(s)	1101, 1416
NmuCI	GTSAC	2 cut(s)	1111, 1531
NsiI	ATGCAT	2 cut(s)	1126, 1873
NspI	RCATGY	3 cut(s)	1638, 1736, 2029
PaeI	GCATGC	1 cut(s)	1736
PaqCI	CACCTGC	2 cut(s)	416, 1349
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PctI	GAATGC	1 cut(s)	1006
PfeI	GAWTC	4 cut(s)	1190, 1496, 1946, 2000
PflMI	CCANNNNNTGG	1 cut(s)	1273
PkrI	GCNGC	9 cut(s)	29, 32, 35, 681, 771, 1165, 1880, 2042, 2395
PleI	GAGTC	1 cut(s)	2452
PpsI	GAGTC	1 cut(s)	2452
Ppu21I	YACGTR	1 cut(s)	1326
PshBI	ATTAAT	5 cut(s)	1232, 1337, 1578, 1971, 2358
PsiI	TTATAA	1 cut(s)	2252
Psp6I	CCWGG	2 cut(s)	1266, 2334
PspFI	CCCAGC	1 cut(s)	2330
PspGI	CCWGG	2 cut(s)	1266, 2334
PspN4I	GGNNCC	2 cut(s)	1101, 1416
PspPI	GGNCC	3 cut(s)	39, 1428, 1723
PsuI	RGATCY	2 cut(s)	378, 2188
RsaI	GTAC	3 cut(s)	1223, 1720, 1958
RsaNI	GTAC	3 cut(s)	1222, 1719, 1957
RseI	CAYNNNNRTG	2 cut(s)	389, 2217
SatI	GCNGC	9 cut(s)	28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
Sau96I	GGNCC	3 cut(s)	39, 1428, 1723
SchI	GAGTC	1 cut(s)	2453
ScrFI	CCNGG	2 cut(s)	1268, 2336
SduI	GDGCHC	1 cut(s)	2224
SfaNI	GCATC	6 cut(s)	1281, 1573, 1596, 1678, 2023, 2591
SfcI	CTRYAG	2 cut(s)	1432, 2512
SinI	GGWCC	1 cut(s)	1428
SmiMI	CAYNNNNRTG	2 cut(s)	389, 2217
SmlI	CTYRAG	4 cut(s)	1502, 2018, 2131, 2579
SmoI	CTYRAG	4 cut(s)	1502, 2018, 2131, 2579
SnaBI	TACGTA	1 cut(s)	1326
SphI	GCATGC	1 cut(s)	1736
SspI	AATATT	1 cut(s)	1695
SspMI	CTAG	6 cut(s)	1052, 1062, 1314, 1472, 1997, 2120
StyD4I	CCNGG	2 cut(s)	1266, 2334
StyI	CCWWGG	2 cut(s)	600, 1650
TaiI	ACGT	7 cut(s)	704, 908, 1223, 1328, 1845, 1958, 1987
TaqI	TCGA	6 cut(s)	114, 1216, 1296, 2093, 2490, 2595
TauI	GCSGC	3 cut(s)	682, 772, 2396
TfiI	GAWTC	4 cut(s)	1190, 1496, 1946, 2000
TscAI	CASTG	6 cut(s)	88, 748, 1355, 1411, 1430, 2233
TseFI	GTSAC	2 cut(s)	1111, 1531
TseI	GCWGC	6 cut(s)	27, 30, 33, 1163, 1878, 2040
Tsp45I	GTSAC	2 cut(s)	1111, 1531
TspGWI	ACGGA	3 cut(s)	298, 355, 2513
TspRI	CASTG	6 cut(s)	88, 748, 1355, 1411, 1430, 2233
Van91I	CCANNNNNTGG	1 cut(s)	1273
Vha464I	CTTAAG	3 cut(s)	1502, 2018, 2579
VneI	GTGCAC	1 cut(s)	2220
VpaK11BI	GGWCC	1 cut(s)	1428
VspI	ATTAAT	5 cut(s)	1232, 1337, 1578, 1971, 2358
XapI	RAATTY	1 cut(s)	628
XceI	RCATGY	3 cut(s)	1638, 1736, 2029
XmiI	GTMKAC	1 cut(s)	803
XspI	CTAG	6 cut(s)	1052, 1062, 1314, 1472, 1997, 2120
Zsp2I	ATGCAT	2 cut(s)	1126, 1873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.