Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Reverse (-)

86973306 .. 86975989

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGATTAGAAAACCGACGGCCACGATCACCCCATTCAAGCACCAACTCTTGTTGTTCTTCTCCTCCTCCTCCTGTATTCCCTCTCCTCCACCACCACCACCGGACAACCTCCCTTCCCAGCTCTTCGCCATCCTCTCCGGCCCAAACTGGCAAAAACACCCCTCCCTCAAAGCCCTTATCCCCTCCATATCCCCCTCCCACGTCTCCTCCCTCTTCTCCCTCAACCCGGTCCACCCCCGAACCGCCCTCCACTTCTTCACCTGGCTCGCCCACAACCCCAAATTCCACCACAACGTCCACTCCCACTCCTCCCTCCTCGCCCTCCTCCTCCGCAACGGCTTCTCCGGCCCCGCCGAGAGGGTCCGCATTTCGATGATTAAGGCTTCAATTTCTAAGGCCGACGCCCGGTTCGTGCTGGACCGGTTGCGCCGGTTCAAGCACGAATTCGGGTTCAAGATCACTCTCAGGTGTTATGATTCTCTTTTATTTTCAATTTCCAAGCTGTTAGGGATTGAAGATTTGAAAATGTTGTATTTGGAAATGTTGGAGGATAAAATCTCCCCTGATTTGCATATATATAATATCATGGTGAATGCTTATTGTAGATTAGGCAATGTAGTTGAGGCTGCTGTCTATGTTAGTAAGATCGTTGAGGCGGGTTTGAAGCCCACTACGAATACTTACAATTCTTTGATAATGGGGCATTGTAGGAATAAGGATGTGGATAGTGCTTATAGGACTTTTAAGGTGATCCCCAACAAGGGTTGTGCAAGAGATGTGGTTTCGTATAATGTGTTGATACATGGGCTCTGTGAGGCTGGCAGGAGTGATGAGGCGTTTCAGGGGAGGAGATTGGAAGGGATGAATTTGTTTAAGGAGATGAAAGACAAGGGTTGTGAGCCTAGTGTAAATACTTATAATGTGCTCATTACTAGCCTGTGTGACGAAAATAAGCTTCAGTATGCTAGGAAGGTTCTAGACCTGATGTCGGGGAAAGGGTTGGTTCCGGATGTTGTCACGTACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCGGTTGAGGCTGCATTTGGGATTCTGGGTTTGATGGAATCTGTTAAGTGTCGTCCAAATGCTCGCACGTTTACTGAATTGATTCATGGGTTTTGTAAAAGGAATAATGTGCACCAGGCAATGGCGCTTCTTGATAGGATGCTTGAACGGAAGCTCTCACCAGACCGGATTACATATAATTCGTTGATCAATGGGCAGTGTAAAGCAGGTCATGTAGATAGTGCTTATAGGTTGCTTAGTTTGATGAAACATAGTGGTTTAGTTCCTGACCAGTGGACTTACAGTGTTATCATCGACAGTCTCTGTAAGTTGGGGAGATTAAAAGAAGCTCAAGCCCTCTTCGATTCCCTCAAGGACAAAGGCATCAAGTCTAATGAAGTGATATTTACGGCTTTACTTGATGGTTACTGCAAGATTGGGAAAATCGATGATGCTCGCTCTTTATTTAATAGAATGCTTGCTGAGGGTTGTTTCCCAAACTCATATACTTACTGTGCATTCCTAGGTGGGCTGTGCAAAGAGGGAAAAACAAAGGAAGCATTATCAGTGGTGGAAAAGATGCTAAGTAGTGGTGTGAAGCCTACAGTCCACACTTGTAACGTTCTAATTAACCATGTGCTGAAAGAAGGGGATTTCAACCATGCTCAGAGGTTTTTGAATGAATTTGTTTCTCTTGGTTACCGACCTGATTCAGTTATGTACGGTACATTTGTTCATGCATATTGCAGCATAGATAATATCAAAGAAGCAGAGAAGGTAATGACTAAGATGGGTGAAGAAGGAATTTCTGCAGATTCATTGACATACGCATTTTTAATCGAGGCATATCTTCGTTTGGGATTAATAGATTCTGCATTTGATGTCTTTAAGCGCATGTTTGATGCTCATTGCAGCCCTTGTCATCGCATCTATTCCTTACTCATCAAACACCTGTCAAATGAAAAGTTGCTGAAGGCCGACGATAATGTAGTAGGAGTTCATATGGTTTCAAGTGTCCCATCAGCTGATACGTGGAAGACACTGGATTTTGAAATTGCTTTGGAGCTCCTTGAGAAGATGAATGAACATGGTTGTGCACCGAATGTAAATACTTACGGGGTGCTTATAGTAGCACTTTGCAAAGCGAGGAACTTGGAAGTAGCCCGTAAGTTGTATCATCATATGAGAGATACCAGCATTTCTCCCAGTGAGGATATTTGTAACTCTCTTCTTAAATGTTGCTGTGAGTTGAAAGTGTATGGAGAAGCAGCTATTTTGGTGGACACTATGATTCAGCTGGGTTATTTACCAGCATTGGATTCATGCAAATTGCTTGTATGTGGACTTTTTGAAGAGGAGAATAACGAGAAGGCAAATTCTGTTTTCTGCAGAATACTTTGTTGCGCGTATAACTACGATGAAGTAGCCTGGAAAGTTCTTCTTGAAGGTTTACTTAAGAGGGGTCATATCAATAGATGCTCTGAGATGGTAACCGTCATCGAGAATATGGGTTACAAGCTTCATCCTGAGACCTATTCAATGTTAATTGAGGGATTTGATGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

867

Amino Acids

97.22

Weight (kDa)

8.14

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	178 - 280	7.7e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	188 - 232	1.8e-07	PPR repeat family
PPR_3	PF13812	214 - 268	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	220 - 249	2.7e-08	PPR repeat
PPR_2	PF13041	223 - 271	2.4e-13	PPR repeat family
PPR_long	PF17177	237 - 366	4.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	254 - 281	1.8e-09	PPR repeat
PPR_2	PF13041	258 - 315	9.3e-16	PPR repeat family
PPR_long	PF17177	288 - 449	7.4e-14	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	290 - 348	1.6e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	297 - 329	5.9e-08	PPR repeat
PPR_2	PF13041	301 - 342	1.6e-09	PPR repeat family
TPR_24	PF23276	317 - 401	1.3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	325 - 380	1.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	332 - 365	4.2e-12	PPR repeat
PPR_2	PF13041	336 - 385	1e-16	PPR repeat family
PPR	PF01535	339 - 366	9.3e-07	PPR repeat
PPR_1	PF12854	369 - 399	1.5e-09	PPR repeat
PPR_3	PF13812	374 - 416	6.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	375 - 420	4.4e-13	PPR repeat family
PPR_1	PF12854	404 - 435	8.9e-12	PPR repeat
PPR_2	PF13041	406 - 455	1.4e-16	PPR repeat family
PPR	PF01535	409 - 439	1.6e-06	PPR repeat
PPR_1	PF12854	438 - 468	7.4e-10	PPR repeat
PPR	PF01535	445 - 474	3.3e-06	PPR repeat
PPR_long	PF17177	460 - 574	9.4e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	462 - 569	7e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	465 - 521	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	472 - 504	6.9e-09	PPR repeat
PPR_2	PF13041	477 - 525	1.1e-15	PPR repeat family
PPR	PF01535	479 - 509	9.6e-08	PPR repeat
PPR_1	PF12854	508 - 539	8.8e-09	PPR repeat
PPR_2	PF13041	519 - 556	6.5e-09	PPR repeat family
PPR_2	PF13041	546 - 594	1.5e-07	PPR repeat family
PPR_3	PF13812	571 - 628	6.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	581 - 628	2.2e-08	PPR repeat family
PPR_long	PF17177	692 - 862	5e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	694 - 726	6.5e-07	PPR repeat family
PPR_3	PF13812	701 - 759	4.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	709 - 741	3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
Acc36I	ACCTGC	1 cut(s)	1253
AccB7I	CCANNNNNTGG	1 cut(s)	1177
AccBSI	CCGCTC	1 cut(s)	1058
AccII	CGCG	1 cut(s)	2441
AccIII	TCCGGA	1 cut(s)	1006
AciI	CCGC	6 cut(s)	243, 331, 351, 364, 656, 1058
AclI	AACGTT	1 cut(s)	1656
AclWI	GGATC	1 cut(s)	745
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	6 cut(s)	281, 443, 865, 1718, 1839, 2410
AcuI	CTGAAG	2 cut(s)	941, 2027
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	1022, 1757, 1762
AfiI	CCNNNNNNNGG	7 cut(s)	226, 357, 405, 760, 761, 988, 1177
AflII	CTTAAG	1 cut(s)	2489
AgeI	ACCGGT	1 cut(s)	420
AhdI	GACNNNNNGTC	1 cut(s)	985
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	3 cut(s)	260, 1170, 2462
Alw21I	GWGCWC	4 cut(s)	927, 1170, 2103, 2134
Alw26I	GTCTC	3 cut(s)	208, 1361, 2558
Alw44I	GTGCAC	2 cut(s)	1166, 2130
AlwI	GGATC	1 cut(s)	745
AlwNI	CAGNNNCTG	1 cut(s)	1359
Aor13HI	TCCGGA	1 cut(s)	1006
AoxI	GGCC	5 cut(s)	18, 139, 346, 396, 2010
ApaLI	GTGCAC	2 cut(s)	1166, 2130
ApeKI	GCWGC	5 cut(s)	626, 1067, 1782, 1947, 2303
ApoI	RAATTY	6 cut(s)	281, 443, 865, 1718, 1839, 2410
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AseI	ATTAAT	1 cut(s)	1898
AsiGI	ACCGGT	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	1137
AspA2I	CCTAGG	1 cut(s)	1558
AspLEI	GCGC	4 cut(s)	429, 1183, 1929, 2441
AspS9I	GGNCC	5 cut(s)	140, 229, 347, 361, 418
AsuC2I	CCSGG	2 cut(s)	227, 406
AsuHPI	GGTGA	6 cut(s)	19, 250, 601, 760, 1206, 1841
AvaII	GGWCC	3 cut(s)	229, 361, 418
AvrII	CCTAGG	1 cut(s)	1558
BaeGI	GKGCMC	2 cut(s)	1170, 2134
BaeI	ACNNNNGTAYC	2 cut(s)	1752, 1785
BanII	GRGCYC	2 cut(s)	810, 2103
BbsI	GAAGAC	1 cut(s)	2078
Bbv12I	GWGCWC	4 cut(s)	927, 1170, 2103, 2134
BbvCI	CCTCAGC	1 cut(s)	1518
BbvI	GCAGC	5 cut(s)	613, 1054, 1794, 1959, 2315
BccI	CCATC	8 cut(s)	137, 1031, 1084, 1451, 1819, 2062, 2515, 2588
BceAI	ACGGC	3 cut(s)	33, 352, 1461
BciT130I	CCWGG	3 cut(s)	262, 1172, 2464
BclI	TGATCA	1 cut(s)	1242
BcnI	CCSGG	2 cut(s)	227, 406
BcoDI	GTCTC	3 cut(s)	208, 1361, 2558
BfaI	CTAG	5 cut(s)	903, 933, 966, 977, 1559
BfmI	CTRYAG	3 cut(s)	1638, 1845, 2422
BfoI	RGCGCY	1 cut(s)	1184
BfrI	CTTAAG	1 cut(s)	2489
BfuAI	ACCTGC	1 cut(s)	1253
BisI	GCNGC	5 cut(s)	627, 1068, 1783, 1948, 2304
BlnI	CCTAGG	1 cut(s)	1558
BlsI	GCNGC	5 cut(s)	628, 1069, 1784, 1949, 2305
Bme1390I	CCNGG	5 cut(s)	227, 262, 406, 1172, 2464
Bme18I	GGWCC	3 cut(s)	229, 361, 418
BmeRI	GACNNNNNGTC	1 cut(s)	985
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	5 cut(s)	140, 229, 347, 361, 418
BmiI	GGNNCC	3 cut(s)	349, 362, 1005
BmrFI	CCNGG	5 cut(s)	227, 262, 406, 1172, 2464
BmrI	ACTGGG	1 cut(s)	2235
BmsI	GCATC	7 cut(s)	1185, 1428, 1477, 1605, 1927, 1971, 2501
BmuI	ACTGGG	1 cut(s)	2235
BpiI	GAAGAC	1 cut(s)	2078
Bpu10I	CCTNAGC	1 cut(s)	1518
BpuEI	CTTGAG	3 cut(s)	1371, 1391, 2126
BpuMI	CCSGG	2 cut(s)	227, 406
Bsa29I	ATCGAT	1 cut(s)	1482
BsaAI	YACGTR	2 cut(s)	1020, 2067
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	2558
BsaJI	CCNNGG	1 cut(s)	1558
BsaWI	WCCGGW	4 cut(s)	100, 420, 1006, 1221
BsaXI	ACNNNNNCTCC	8 cut(s)	191, 221, 284, 290, 314, 320, 326, 356
Bsc4I	CCNNNNNNNGG	7 cut(s)	226, 357, 405, 760, 761, 988, 1177
Bse118I	RCCGGY	2 cut(s)	420, 429
Bse1I	ACTGG	4 cut(s)	152, 1327, 2082, 2241
Bse3DI	GCAATG	3 cut(s)	619, 1182, 1942
BseAI	TCCGGA	1 cut(s)	1006
BseBI	CCWGG	3 cut(s)	262, 1172, 2464
BseCI	ATCGAT	1 cut(s)	1482
BseDI	CCNNGG	1 cut(s)	1558
BseGI	GGATG	6 cut(s)	129, 724, 867, 1015, 1200, 2557
BseLI	CCNNNNNNNGG	7 cut(s)	226, 357, 405, 760, 761, 988, 1177
BseMI	GCAATG	3 cut(s)	619, 1182, 1942
BseMII	CTCAG	5 cut(s)	478, 1509, 1715, 2508, 2553
BseNI	ACTGG	4 cut(s)	152, 1327, 2082, 2241
BseSI	GKGCMC	2 cut(s)	1170, 2134
BseXI	GCAGC	5 cut(s)	613, 1054, 1794, 1959, 2315
BseYI	CCCAGC	2 cut(s)	117, 2332
Bsh1236I	CGCG	1 cut(s)	2441
BshFI	GGCC	5 cut(s)	20, 141, 348, 398, 2012
BshTI	ACCGGT	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	1482
BsiHKAI	GWGCWC	4 cut(s)	927, 1170, 2103, 2134
BsiSI	CCGG	9 cut(s)	101, 138, 227, 345, 406, 421, 430, 1007, 1222
BslFI	GGGAC	1 cut(s)	2036
BslI	CCNNNNNNNGG	7 cut(s)	226, 357, 405, 760, 761, 988, 1177
BsmAI	GTCTC	3 cut(s)	208, 1361, 2558
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	2036
BsmI	GAATGC	3 cut(s)	598, 1515, 1553
BsnI	GGCC	5 cut(s)	20, 141, 348, 398, 2012
Bso31I	GGTCTC	1 cut(s)	2558
Bsp1286I	GDGCHC	5 cut(s)	810, 927, 1170, 2103, 2134
Bsp13I	TCCGGA	1 cut(s)	1006
Bsp143I	GATC	5 cut(s)	24, 456, 645, 750, 1242
BspACI	CCGC	6 cut(s)	243, 331, 351, 364, 656, 1058
BspANI	GGCC	5 cut(s)	20, 141, 348, 398, 2012
BspCNI	CTCAG	5 cut(s)	477, 1510, 1714, 2509, 2554
BspDI	ATCGAT	1 cut(s)	1482
BspEI	TCCGGA	1 cut(s)	1006
BspFNI	CGCG	1 cut(s)	2441
BspLI	GGNNCC	3 cut(s)	349, 362, 1005
BspMAI	CTGCAG	2 cut(s)	1849, 2426
BspMI	ACCTGC	1 cut(s)	1253
BspPI	GGATC	1 cut(s)	745
BspQI	GCTCTTC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	2489
BspTNI	GGTCTC	1 cut(s)	2558
BsrBI	CCGCTC	1 cut(s)	1058
BsrDI	GCAATG	3 cut(s)	619, 1182, 1942
BsrFI	RCCGGY	2 cut(s)	420, 429
BsrI	ACTGG	4 cut(s)	152, 1327, 2082, 2241
BssAI	RCCGGY	2 cut(s)	420, 429
BssECI	CCNNGG	1 cut(s)	1558
BssMI	GATC	5 cut(s)	24, 456, 645, 750, 1242
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	1558
Bst2UI	CCWGG	3 cut(s)	262, 1172, 2464
Bst4CI	ACNGT	6 cut(s)	1340, 1355, 1550, 1642, 1760, 2530
Bst6I	CTCTTC	5 cut(s)	128, 218, 1400, 2268, 2382
BstACI	GRCGYC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	2489
BstBAI	YACGTR	2 cut(s)	1020, 2067
BstC8I	GCNNGC	5 cut(s)	267, 820, 1120, 1492, 1515
BstDEI	CTNAG	9 cut(s)	393, 464, 1292, 1518, 1619, 1701, 1821, 2517, 2562
BstEII	GGTNACC	2 cut(s)	1733, 2524
BstF5I	GGATG	6 cut(s)	129, 724, 867, 1015, 1200, 2557
BstFNI	CGCG	1 cut(s)	2441
BstH2I	RGCGCY	1 cut(s)	1184
BstHHI	GCGC	4 cut(s)	429, 1183, 1929, 2441
BstKTI	GATC	5 cut(s)	27, 459, 648, 753, 1245
BstMAI	GTCTC	3 cut(s)	208, 1361, 2558
BstMBI	GATC	5 cut(s)	24, 456, 645, 750, 1242
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 1064
BstNI	CCWGG	3 cut(s)	262, 1172, 2464
BstNSI	RCATGY	1 cut(s)	1933
BstPI	GGTNACC	2 cut(s)	1733, 2524
BstSCI	CCNGG	5 cut(s)	225, 260, 404, 1170, 2462
BstSFI	CTRYAG	3 cut(s)	1638, 1845, 2422
BstSLI	GKGCMC	2 cut(s)	1170, 2134
BstUI	CGCG	1 cut(s)	2441
BstV1I	GCAGC	5 cut(s)	613, 1054, 1794, 1959, 2315
BstV2I	GAAGAC	1 cut(s)	2078
Bsu15I	ATCGAT	1 cut(s)	1482
BsuRI	GGCC	5 cut(s)	20, 141, 348, 398, 2012
BsuTUI	ATCGAT	1 cut(s)	1482
BtgZI	GCGATG	1 cut(s)	1943
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	6 cut(s)	129, 724, 867, 1015, 1200, 2557
BtsI	GCAGTG	1 cut(s)	1259
BtsIMutI	CAGTG	6 cut(s)	1259, 1334, 1345, 1608, 2075, 2248
BveI	ACCTGC	1 cut(s)	1253
Cac8I	GCNNGC	5 cut(s)	267, 820, 1120, 1492, 1515
CaiI	CAGNNNCTG	1 cut(s)	1359
CfoI	GCGC	4 cut(s)	429, 1183, 1929, 2441
Cfr10I	RCCGGY	2 cut(s)	420, 429
Cfr13I	GGNCC	5 cut(s)	140, 229, 347, 361, 418
ClaI	ATCGAT	1 cut(s)	1482
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	1021, 1756, 1761
CspAI	ACCGGT	1 cut(s)	420
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviQI	GTAC	3 cut(s)	1021, 1756, 1761
DdeI	CTNAG	9 cut(s)	393, 464, 1292, 1518, 1619, 1701, 1821, 2517, 2562
DpnI	GATC	5 cut(s)	26, 458, 647, 752, 1244
DpnII	GATC	5 cut(s)	24, 456, 645, 750, 1242
DriI	GACNNNNNGTC	1 cut(s)	985
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	5 cut(s)	128, 218, 1400, 2268, 2382
Eam1105I	GACNNNNNGTC	1 cut(s)	985
EarI	CTCTTC	5 cut(s)	128, 218, 1400, 2268, 2382
Ecl136II	GAGCTC	1 cut(s)	2101
Eco130I	CCWWGG	1 cut(s)	1558
Eco24I	GRGCYC	2 cut(s)	810, 2103
Eco31I	GGTCTC	1 cut(s)	2558
Eco47I	GGWCC	3 cut(s)	229, 361, 418
Eco53kI	GAGCTC	1 cut(s)	2101
Eco57I	CTGAAG	2 cut(s)	941, 2027
Eco91I	GGTNACC	2 cut(s)	1733, 2524
EcoICRI	GAGCTC	1 cut(s)	2101
EcoO65I	GGTNACC	2 cut(s)	1733, 2524
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	3 cut(s)	260, 1170, 2462
EcoT14I	CCWWGG	1 cut(s)	1558
EcoT22I	ATGCAT	2 cut(s)	1030, 1777
EcoT38I	GRGCYC	2 cut(s)	810, 2103
ErhI	CCWWGG	1 cut(s)	1558
Esp3I	CGTCTC	1 cut(s)	208
FalI	AAGNNNNNCTT	4 cut(s)	2460, 2492, 2472, 2504
FaqI	GGGAC	1 cut(s)	2036
FauI	CCCGC	2 cut(s)	358, 649
FauNDI	CATATG	2 cut(s)	2037, 2217
FbaI	TGATCA	1 cut(s)	1242
Fnu4HI	GCNGC	5 cut(s)	627, 1068, 1783, 1948, 2304
FokI	GGATG	6 cut(s)	116, 731, 874, 1022, 1207, 2544
FriOI	GRGCYC	2 cut(s)	810, 2103
Fsp4HI	GCNGC	5 cut(s)	627, 1068, 1783, 1948, 2304
FspBI	CTAG	5 cut(s)	903, 933, 966, 977, 1559
GlaI	GCGC	4 cut(s)	428, 1182, 1928, 2440
GluI	GCNGC	5 cut(s)	627, 1068, 1783, 1948, 2304
GsaI	CCCAGC	2 cut(s)	121, 2336
HaeII	RGCGCY	1 cut(s)	1184
HaeIII	GGCC	5 cut(s)	20, 141, 348, 398, 2012
HapII	CCGG	9 cut(s)	101, 138, 227, 345, 406, 421, 430, 1007, 1222
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	4 cut(s)	429, 1183, 1929, 2441
Hin1I	GRCGYC	1 cut(s)	402
Hin6I	GCGC	4 cut(s)	427, 1181, 1927, 2439
HinP1I	GCGC	4 cut(s)	427, 1181, 1927, 2439
HindIII	AAGCTT	2 cut(s)	953, 2552
HpaII	CCGG	9 cut(s)	101, 138, 227, 345, 406, 421, 430, 1007, 1222
HphI	GGTGA	6 cut(s)	19, 250, 601, 760, 1206, 1841
Hpy188I	TCNGA	2 cut(s)	1704, 2518
Hpy188III	TCNNGA	8 cut(s)	454, 977, 1007, 1187, 1322, 2477, 2536, 2561
Hpy99I	CGWCG	3 cut(s)	19, 404, 2018
HpyAV	CCTTC	9 cut(s)	123, 851, 964, 1676, 1804, 1829, 2002, 2398, 2474
HpyCH4III	ACNGT	6 cut(s)	1340, 1355, 1550, 1642, 1760, 2530
HpyCH4IV	ACGT	6 cut(s)	201, 294, 1019, 1124, 1656, 2066
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 1064
HpyF3I	CTNAG	9 cut(s)	393, 464, 1292, 1518, 1619, 1701, 1821, 2517, 2562
HpySE526I	ACGT	6 cut(s)	201, 294, 1019, 1124, 1656, 2066
Hsp92I	GRCGYC	1 cut(s)	402
HspAI	GCGC	4 cut(s)	427, 1181, 1927, 2439
Kpn2I	TCCGGA	1 cut(s)	1006
Ksp22I	TGATCA	1 cut(s)	1242
Kzo9I	GATC	5 cut(s)	24, 456, 645, 750, 1242
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	3 cut(s)	1055, 2098, 2106
Lsp1109I	GCAGC	5 cut(s)	613, 1054, 1794, 1959, 2315
LweI	GCATC	7 cut(s)	1185, 1428, 1477, 1605, 1927, 1971, 2501
MaeI	CTAG	5 cut(s)	903, 933, 966, 977, 1559
MaeII	ACGT	6 cut(s)	201, 294, 1019, 1124, 1656, 2066
MaeIII	GTNAC	8 cut(s)	941, 1015, 1460, 1652, 1733, 2255, 2524, 2546
MalI	GATC	5 cut(s)	26, 458, 647, 752, 1244
MbiI	CCGCTC	1 cut(s)	1058
MboI	GATC	5 cut(s)	24, 456, 645, 750, 1242
MhlI	GDGCHC	5 cut(s)	810, 927, 1170, 2103, 2134
MmeI	TCCRAC	1 cut(s)	525
Mph1103I	ATGCAT	2 cut(s)	1030, 1777
MroI	TCCGGA	1 cut(s)	1006
MroXI	GAANNNNTTC	1 cut(s)	1137
MslI	CAYNNNNRTG	2 cut(s)	371, 2127
MspA1I	CMGCKG	2 cut(s)	2060, 2332
MspCI	CTTAAG	1 cut(s)	2489
MspI	CCGG	9 cut(s)	101, 138, 227, 345, 406, 421, 430, 1007, 1222
MspR9I	CCNGG	5 cut(s)	227, 262, 406, 1172, 2464
Mva1269I	GAATGC	3 cut(s)	598, 1515, 1553
MvaI	CCWGG	3 cut(s)	262, 1172, 2464
MvnI	CGCG	1 cut(s)	2441
MwoI	GCNNNNNNNGC	2 cut(s)	345, 1064
NciI	CCSGG	2 cut(s)	227, 406
NdeI	CATATG	2 cut(s)	2037, 2217
NdeII	GATC	5 cut(s)	24, 456, 645, 750, 1242
NlaIV	GGNNCC	3 cut(s)	349, 362, 1005
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	2 cut(s)	941, 1015
NsiI	ATGCAT	2 cut(s)	1030, 1777
NspI	RCATGY	1 cut(s)	1933
PciSI	GCTCTTC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	3 cut(s)	598, 1515, 1553
PdmI	GAANNNNTTC	1 cut(s)	1137
PflMI	CCANNNNNTGG	1 cut(s)	1177
PinAI	ACCGGT	1 cut(s)	420
PkrI	GCNGC	5 cut(s)	628, 1069, 1784, 1949, 2305
Ppu21I	YACGTR	2 cut(s)	1020, 2067
PshBI	ATTAAT	1 cut(s)	1898
PsiI	TTATAA	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	2103
Psp1406I	AACGTT	1 cut(s)	1656
Psp6I	CCWGG	3 cut(s)	260, 1170, 2462
PspEI	GGTNACC	2 cut(s)	1733, 2524
PspFI	CCCAGC	2 cut(s)	117, 2332
PspGI	CCWGG	3 cut(s)	260, 1170, 2462
PspN4I	GGNNCC	3 cut(s)	349, 362, 1005
PspPI	GGNCC	5 cut(s)	140, 229, 347, 361, 418
PsrI	GAACNNNNNNTAC	2 cut(s)	2016, 2048
PstI	CTGCAG	2 cut(s)	1849, 2426
PstNI	CAGNNNCTG	1 cut(s)	1359
PvuII	CAGCTG	2 cut(s)	2060, 2332
RsaI	GTAC	3 cut(s)	1022, 1757, 1762
RsaNI	GTAC	3 cut(s)	1021, 1756, 1761
RseI	CAYNNNNRTG	2 cut(s)	371, 2127
SacI	GAGCTC	1 cut(s)	2103
SapI	GCTCTTC	1 cut(s)	128
SatI	GCNGC	5 cut(s)	627, 1068, 1783, 1948, 2304
Sau3AI	GATC	5 cut(s)	24, 456, 645, 750, 1242
Sau96I	GGNCC	5 cut(s)	140, 229, 347, 361, 418
ScrFI	CCNGG	5 cut(s)	227, 262, 406, 1172, 2464
SduI	GDGCHC	5 cut(s)	810, 927, 1170, 2103, 2134
SfaNI	GCATC	7 cut(s)	1185, 1428, 1477, 1605, 1927, 1971, 2501
SfcI	CTRYAG	3 cut(s)	1638, 1845, 2422
SinI	GGWCC	3 cut(s)	229, 361, 418
SmiMI	CAYNNNNRTG	2 cut(s)	371, 2127
SmlI	CTYRAG	4 cut(s)	1386, 1406, 2105, 2489
SmoI	CTYRAG	4 cut(s)	1386, 1406, 2105, 2489
SsiI	CCGC	6 cut(s)	243, 331, 351, 364, 656, 1058
SspMI	CTAG	5 cut(s)	903, 933, 966, 977, 1559
SstI	GAGCTC	1 cut(s)	2103
StyD4I	CCNGG	5 cut(s)	225, 260, 404, 1170, 2462
StyI	CCWWGG	1 cut(s)	1558
TaaI	ACNGT	6 cut(s)	1340, 1355, 1550, 1642, 1760, 2530
TaiI	ACGT	6 cut(s)	204, 297, 1022, 1127, 1659, 2069
TaqI	TCGA	6 cut(s)	371, 1350, 1398, 1482, 1875, 2535
TscAI	CASTG	6 cut(s)	1259, 1334, 1345, 1608, 2082, 2248
TseFI	GTSAC	2 cut(s)	941, 1015
TseI	GCWGC	5 cut(s)	626, 1067, 1782, 1947, 2303
Tsp45I	GTSAC	2 cut(s)	941, 1015
TspGWI	ACGGA	1 cut(s)	1219
TspRI	CASTG	6 cut(s)	1259, 1334, 1345, 1608, 2082, 2248
Van91I	CCANNNNNTGG	1 cut(s)	1177
Vha464I	CTTAAG	1 cut(s)	2489
VneI	GTGCAC	2 cut(s)	1166, 2130
VpaK11BI	GGWCC	3 cut(s)	229, 361, 418
VspI	ATTAAT	1 cut(s)	1898
XapI	RAATTY	6 cut(s)	281, 443, 865, 1718, 1839, 2410
XbaI	TCTAGA	1 cut(s)	976
XceI	RCATGY	1 cut(s)	1933
XmaJI	CCTAGG	1 cut(s)	1558
XmnI	GAANNNNTTC	1 cut(s)	1137
XspI	CTAG	5 cut(s)	903, 933, 966, 977, 1559
Zsp2I	ATGCAT	2 cut(s)	1030, 1777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.