FvH4_1g06430

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001743
Physical Location & Seq
Forward (+)
3398267 .. 3401333
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06430.t1

Sequence Viewer

Length: 2661 bp
ATGATTAGAAAACCCATCACCACAATCACCCCATTCAACCTCCAACGCCTCCTCTTCTCCTCCTCTCCTCAACCACCGCCCACCCTCCCCTCCCAGCTCTTCACCATCCTCTCCCGCCCAAATTGGCAAAAACACCCCTCCCTCAAACCCCTTATCCCCTCCATATCCCCCTCCCACCTCTCCTCCCTCTTCTCCCTCCACCCCCTCCACCCCACAACCGCCCTTCACTTCTTCATCTACCTCTCCAACCTCCCCAACTTCCGCCACACCGTCCACTCCCACTCCTCCCTCCTCGCCCTCCTCCTCCGCCACGGCTTCTCCGGCCCCGCCGAGAAGCTCCGCATTGGTATGATCAAGTCATCTGTATCCAAAGCCGACGCCCGGTTCGTCCTGGACCAGCTCCGCCGTTTCAAGCTCCAATATGGTTTCAAGCTCAACCTCAGGTGCTACGGCTCTATGTTATTCTCATTTTCTAAATTTTTCGGGGTTCAGGATTTGAAGATGTTGTATATCGAAATGCTGGAGGATGGGGTGATCCCTGATTTGCATATATATAATGTCATGGTGAATGCTTACTGTAGATTAGGCAATGTGGGTGACGCTAATGTGTATGTGAGTAAGATAGTCGAGGCGGGTTTGAAGCCGAATACGAATACTTATAATTCTTTGATAATGGGGCATTGTAGGAAAAAAGATGTGGATAGTGCTTTTAGGACTTTTAGGGTGATGCCCGACAAGGGTTGTGCAAGAGATGTGGTTTCGTATAATGTGTTGATTCATGGGTTATGTGAGGCTGGGAGGAGTGGCGAGGCATTTGAGTTGTTTGGTAATATGGAGAAGGATGAGTGTGTACCAGATGCGCCGACTTATAATGTTCTTGTTCATGCTTTGTGTAGAGGGGGGAGGAGGTTAGAAGGGATGAATTTGTTTAAGGAGATGAAGGAGAAGGGGTGTGAGCCTAGTGTAAATACTTATAATGTGCTTATTACTAGCCTGTGTGACGAAAATAAGGTTGAGTATGCTAGAAAGGTTCTGGACCTGATGTCGAAGAAAGGGTTGGTTCCAGATGTCGTCACGTACAATGCATTGATTGATGGGTATTGCAAGGATGGTGCGGTTGAGGTTGCGTTTGAGATTCTGGGTTTGATGGAATCTAGCAAGTGTCGTCCGAATGCTCGCACGTTTACTGAATTGATTCATGGGTTTTGTAAAAGGAATAATGTGCACCAAGCGATGGCGCTTCTTGATAGGATGCTTGAAATGAAGCTGTCACCAGACCGGATTACATATAATTCGTTGATCAATGGGCAGTGTAAAGCAGGTCATGTAGATAGTGCTTATAGGTTGCTCAATTTGATGAAACATAGTAGTTTAGTTCCTGACCAGTGGACTTACAGTGTTATCATCGACAGTCTCTGTAAGTTAGGGAGATTAGAAGAAGCTCAAGTCCTCTTTGATTCCCTCAAGGAGAAAGGCATCAAGTCTAATGAGGTGATATTTACTGCTTTACTTGATGGTTACTGCAAGGTTGGGAAAATCGATGATGCTCGCACTTTATTTGATAGAATGTGTGCTGAGGGTTGTTTCCCAAACTCATATACTTACTGTGCGTTCCTAGGTGGGCTGTGCAAGGAAGGAAAAACAAAGGAAGCATTATCAGTGGTGGAACAGATGTTAAGTGCTGGTGTGAAGCCTACAGTCCACACGTGTAACATTCTAATTAACCATGTGCTGAAAGAAGGGGATTTCAACCATGCTCAGAGGTTTCTAAATGAATTTGTTTCTCTTGGTTACCGACCTGATGCAGTTATGTACGGTACATTTGTTCATGCATACTGCAGCATAGGTAATATTAAAGAAGCAGAGAAGGTAATGATTAAGATGGATGGAGAAGGAGTTTCTGCAGATTCATTGACTTATGCATTTTTGATCGAGGCATATCTCCGTTTGGGATTAGTAGAGTCTGCATTTGATGTCTTTAGGCGCATGTTTGATGCTCATTGCAACCCTTGTCATCGCATCTATTCATTACTAATCAAACACCTGTCAAATGAAAAGTTGCTGAAGAGCAACGATAATGTAGTAGGACTTCATATGGTTTCAAGTGTACCATCAGCTGATATATGGAAGACAGTGGATTTTGAAATTGGTTTAGAGCTCCTTGAGAAGATGGATGAACATGGTTGTGCGCCGAATATGAACACTTACAGCGAGCTCATAGTAGCATTTTGCAGAGTTAGGAACTTGGAAGTAGCCCGTAAGTTGTATGCTCATATGAGAGATAACAGCATTTCTCCCAGTGAGGATATTTGTAATTCTCTTCTTAAATGTTGCTGCGAGTTGAAAGTGTATGGAGAAGCCGCCATTCTGGTGGACACTATGATACAGCTCGGTTATTTACCAGCATTGGAGTTCTGCAAATTGCTTGTATGTGGACTTTTTGAAGAAGAGAACAACGAGAAGGCAAAATCTGTTTTTTGCAGAATACTTTGTTGCGCATATAACTACGATGAAGTAGCTTGGAAAGTTCTTCTTGAAGGTTTACTTAAAAGAGGTCATATCAACAGATGCTCTGAGATGGTAACCGTCATCGAGCATATGGGTTACAAACTTCATCCTGAGACCTATTCAATGTTGATCGAGGGATTTGATGGAATATAA

Protein Analysis

887

Amino Acids

99.88

Weight (kDa)

7.47

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 170 - 277 3.1e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 180 - 224 3.9e-08 PPR repeat family
PPR_3 PF13812 206 - 260 1.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 212 - 243 2.2e-10 PPR repeat
PPR_2 PF13041 215 - 263 8.5e-16 PPR repeat family
PPR PF01535 219 - 248 4.2e-06 PPR repeat
PPR_long PF17177 229 - 365 1.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 241 - 296 1.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 246 - 279 2.6e-11 PPR repeat
PPR_2 PF13041 250 - 299 1.1e-16 PPR repeat family
PPR PF01535 253 - 283 5.6e-07 PPR repeat
PPR_3 PF13812 275 - 330 7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 282 - 314 4.2e-07 PPR repeat
PPR_2 PF13041 289 - 334 5e-14 PPR repeat family
PPR PF01535 289 - 318 8.4e-07 PPR repeat
PPR_long PF17177 306 - 468 7.2e-15 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 316 - 348 1.1e-08 PPR repeat
PPR_2 PF13041 323 - 364 1.7e-11 PPR repeat family
TPR_24 PF23276 339 - 418 3.7e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 343 - 402 6.9e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 351 - 384 6.4e-13 PPR repeat
PPR_2 PF13041 355 - 404 3e-17 PPR repeat family
PPR PF01535 358 - 388 2.7e-07 PPR repeat
PPR_1 PF12854 388 - 418 1.2e-09 PPR repeat
PPR_3 PF13812 393 - 435 1.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 394 - 439 2.2e-12 PPR repeat family
PPR_1 PF12854 423 - 454 3.6e-12 PPR repeat
PPR_2 PF13041 425 - 474 2.3e-16 PPR repeat family
PPR PF01535 428 - 456 4e-06 PPR repeat
PPR_1 PF12854 458 - 487 7.3e-09 PPR repeat
PPR PF01535 464 - 493 1.1e-06 PPR repeat
PPR_long PF17177 480 - 593 2.3e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 484 - 540 2.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 491 - 523 2.5e-09 PPR repeat
PPR_2 PF13041 496 - 544 3.5e-15 PPR repeat family
PPR PF01535 498 - 528 3.6e-07 PPR repeat
PPR_1 PF12854 527 - 558 7.8e-09 PPR repeat
PPR_2 PF13041 538 - 575 3.4e-09 PPR repeat family
PPR_2 PF13041 565 - 605 6.5e-06 PPR repeat family
PPR_1 PF12854 597 - 628 5.2e-07 PPR repeat
PPR_2 PF13041 600 - 646 6.4e-08 PPR repeat family
PPR_long PF17177 710 - 779 4.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 720 - 778 3.6e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 735 - 779 6.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 660, 870, 975
Acc16I TGCGCA 1 cut(s) 2497
Acc36I ACCTGC 1 cut(s) 1310
AccB7I CCANNNNNTGG 1 cut(s) 1234
AclWI GGATC 1 cut(s) 529
AcsI RAATTY 3 cut(s) 476, 922, 1775
AcuI CTGAAG 1 cut(s) 2084
AcvI CACGTG 1 cut(s) 1707
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 5 cut(s) 852, 1079, 1814, 1819, 2109
AfiI CCNNNNNNNGG 3 cut(s) 381, 737, 1234
AflIII ACRYGT 2 cut(s) 1704, 1706
AhdI GACNNNNNGTC 1 cut(s) 1042
AjnI CCWGG 1 cut(s) 390
AjuI GAANNNNNNNTTGG 2 cut(s) 1040, 1072
Alw21I GWGCWC 3 cut(s) 1227, 2160, 2217
Alw26I GTCTC 2 cut(s) 1418, 2615
Alw44I GTGCAC 1 cut(s) 1223
AlwI GGATC 1 cut(s) 529
AlwNI CAGNNNCTG 1 cut(s) 1416
AoxI GGCC 1 cut(s) 322
ApaLI GTGCAC 1 cut(s) 1223
ApeKI GCWGC 2 cut(s) 1839, 2334
ApoI RAATTY 3 cut(s) 476, 922, 1775
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
Asp700I GAANNNNTTC 1 cut(s) 1194
AspA2I CCTAGG 1 cut(s) 1615
AspLEI GCGC 5 cut(s) 862, 1240, 1986, 2191, 2498
AspS9I GGNCC 3 cut(s) 323, 394, 1036
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 9 cut(s) 10, 19, 94, 544, 577, 608, 736, 1263, 1504
AvaII GGWCC 2 cut(s) 394, 1036
AvrII CCTAGG 1 cut(s) 1615
AxyI CCTNAGG 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 1227
BaeI ACNNNNGTAYC 2 cut(s) 1809, 1842
BanII GRGCYC 2 cut(s) 2160, 2217
BarI GAAGNNNNNNTAC 2 cut(s) 2073, 2105
BbrPI CACGTG 1 cut(s) 1707
BbsI GAAGAC 1 cut(s) 2135
Bbv12I GWGCWC 3 cut(s) 1227, 2160, 2217
BbvCI CCTCAGC 1 cut(s) 1575
BbvI GCAGC 2 cut(s) 1851, 2321
BceAI ACGGC 3 cut(s) 328, 390, 466
BciT130I CCWGG 1 cut(s) 392
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 2 cut(s) 351, 1299
BcnI CCSGG 1 cut(s) 382
BcoDI GTCTC 2 cut(s) 1418, 2615
BfaI CTAG 5 cut(s) 960, 990, 1023, 1155, 1616
BfmI CTRYAG 4 cut(s) 577, 1695, 1837, 1902
BfoI RGCGCY 1 cut(s) 1241
BfuAI ACCTGC 1 cut(s) 1310
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 3 cut(s) 1840, 2335, 2361
BlnI CCTAGG 1 cut(s) 1615
BlsI GCNGC 3 cut(s) 1841, 2336, 2362
Bme1390I CCNGG 2 cut(s) 382, 392
Bme18I GGWCC 2 cut(s) 394, 1036
BmeRI GACNNNNNGTC 1 cut(s) 1042
BmgT120I GGNCC 3 cut(s) 323, 394, 1036
BmiI GGNNCC 2 cut(s) 325, 1062
BmrFI CCNGG 2 cut(s) 382, 392
BmrI ACTGGG 1 cut(s) 2292
BmsI GCATC 9 cut(s) 717, 847, 1242, 1485, 1534, 1792, 1984, 2028, 2558
BmuI ACTGGG 1 cut(s) 2292
BpiI GAAGAC 1 cut(s) 2135
BpmI CTGGAG 1 cut(s) 542
Bpu10I CCTNAGC 1 cut(s) 1575
BpuEI CTTGAG 3 cut(s) 1428, 1448, 2183
BpuMI CCSGG 1 cut(s) 382
Bsa29I ATCGAT 1 cut(s) 1539
BsaAI YACGTR 2 cut(s) 1077, 1707
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 2615
BsaJI CCNNGG 2 cut(s) 310, 1615
BsaWI WCCGGW 1 cut(s) 1278
Bsc4I CCNNNNNNNGG 3 cut(s) 381, 737, 1234
Bse1I ACTGG 2 cut(s) 1384, 2298
Bse21I CCTNAGG 1 cut(s) 440
Bse3DI GCAATG 2 cut(s) 595, 1999
BseBI CCWGG 1 cut(s) 392
BseCI ATCGAT 1 cut(s) 1539
BseDI CCNNGG 2 cut(s) 310, 1615
BseGI GGATG 9 cut(s) 105, 532, 847, 924, 1114, 1257, 1891, 2179, 2614
BseLI CCNNNNNNNGG 3 cut(s) 381, 737, 1234
BseMI GCAATG 2 cut(s) 595, 1999
BseMII CTCAG 5 cut(s) 454, 1566, 1772, 2565, 2610
BseNI ACTGG 2 cut(s) 1384, 2298
BseSI GKGCMC 1 cut(s) 1227
BseXI GCAGC 2 cut(s) 1851, 2321
BseYI CCCAGC 2 cut(s) 93, 794
BshFI GGCC 1 cut(s) 324
BshVI ATCGAT 1 cut(s) 1539
BsiHKAI GWGCWC 3 cut(s) 1227, 2160, 2217
BsiSI CCGG 3 cut(s) 321, 382, 1279
BslI CCNNNNNNNGG 3 cut(s) 381, 737, 1234
BsmAI GTCTC 2 cut(s) 1418, 2615
BsmI GAATGC 2 cut(s) 574, 1177
BsnI GGCC 1 cut(s) 324
Bso31I GGTCTC 1 cut(s) 2615
Bsp1286I GDGCHC 3 cut(s) 1227, 2160, 2217
Bsp143I GATC 5 cut(s) 351, 534, 1299, 1929, 2637
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 5 cut(s) 453, 1567, 1771, 2566, 2611
BspDI ATCGAT 1 cut(s) 1539
BspLI GGNNCC 2 cut(s) 325, 1062
BspMAI CTGCAG 2 cut(s) 1841, 1906
BspMI ACCTGC 1 cut(s) 1310
BspPI GGATC 1 cut(s) 529
BspQI GCTCTTC 2 cut(s) 104, 2060
BspTNI GGTCTC 1 cut(s) 2615
BsrDI GCAATG 2 cut(s) 595, 1999
BsrI ACTGG 2 cut(s) 1384, 2298
BssECI CCNNGG 2 cut(s) 310, 1615
BssMI GATC 5 cut(s) 351, 534, 1299, 1929, 2637
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 1615
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 9 cut(s) 271, 578, 1397, 1412, 1607, 1699, 1817, 2134, 2587
Bst6I CTCTTC 6 cut(s) 59, 104, 194, 2060, 2325, 2442
BstACI GRCGYC 1 cut(s) 378
BstBAI YACGTR 2 cut(s) 1077, 1707
BstC8I GCNNGC 3 cut(s) 1177, 1549, 2213
BstDEI CTNAG 5 cut(s) 440, 1575, 1758, 2574, 2619
BstDSI CCRYGG 1 cut(s) 310
BstEII GGTNACC 2 cut(s) 1790, 2581
BstF5I GGATG 9 cut(s) 105, 532, 847, 924, 1114, 1257, 1891, 2179, 2614
BstH2I RGCGCY 1 cut(s) 1241
BstHHI GCGC 5 cut(s) 862, 1240, 1986, 2191, 2498
BstKTI GATC 5 cut(s) 354, 537, 1302, 1932, 2640
BstMAI GTCTC 2 cut(s) 1418, 2615
BstMBI GATC 5 cut(s) 351, 534, 1299, 1929, 2637
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 1 cut(s) 1990
BstPI GGTNACC 2 cut(s) 1790, 2581
BstSCI CCNGG 2 cut(s) 380, 390
BstSFI CTRYAG 4 cut(s) 577, 1695, 1837, 1902
BstSLI GKGCMC 1 cut(s) 1227
BstV1I GCAGC 2 cut(s) 1851, 2321
BstV2I GAAGAC 1 cut(s) 2135
BstXI CCANNNNNNTGG 1 cut(s) 2371
Bsu15I ATCGAT 1 cut(s) 1539
Bsu36I CCTNAGG 1 cut(s) 440
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 1 cut(s) 324
BsuTUI ATCGAT 1 cut(s) 1539
BtgI CCRYGG 1 cut(s) 310
BtgZI GCGATG 2 cut(s) 1247, 2000
BtsCI GGATG 9 cut(s) 105, 532, 847, 924, 1114, 1257, 1891, 2179, 2614
BtsI GCAGTG 1 cut(s) 1316
BtsIMutI CAGTG 6 cut(s) 1316, 1391, 1402, 1665, 2139, 2305
BveI ACCTGC 1 cut(s) 1310
Cac8I GCNNGC 3 cut(s) 1177, 1549, 2213
CaiI CAGNNNCTG 1 cut(s) 1416
CfoI GCGC 5 cut(s) 862, 1240, 1986, 2191, 2498
Cfr13I GGNCC 3 cut(s) 323, 394, 1036
ClaI ATCGAT 1 cut(s) 1539
CseI GACGC 2 cut(s) 386, 608
Csp6I GTAC 5 cut(s) 851, 1078, 1813, 1818, 2108
CspCI CAANNNNNGTGG 2 cut(s) 735, 770
CviQI GTAC 5 cut(s) 851, 1078, 1813, 1818, 2108
DdeI CTNAG 5 cut(s) 440, 1575, 1758, 2574, 2619
DpnI GATC 5 cut(s) 353, 536, 1301, 1931, 2639
DpnII GATC 5 cut(s) 351, 534, 1299, 1929, 2637
DriI GACNNNNNGTC 1 cut(s) 1042
Eam1104I CTCTTC 6 cut(s) 59, 104, 194, 2060, 2325, 2442
Eam1105I GACNNNNNGTC 1 cut(s) 1042
EarI CTCTTC 6 cut(s) 59, 104, 194, 2060, 2325, 2442
EciI GGCGGA 3 cut(s) 251, 296, 392
Ecl136II GAGCTC 2 cut(s) 2158, 2215
Eco130I CCWWGG 1 cut(s) 1615
Eco24I GRGCYC 2 cut(s) 2160, 2217
Eco31I GGTCTC 1 cut(s) 2615
Eco47I GGWCC 2 cut(s) 394, 1036
Eco53kI GAGCTC 2 cut(s) 2158, 2215
Eco57I CTGAAG 1 cut(s) 2084
Eco72I CACGTG 1 cut(s) 1707
Eco81I CCTNAGG 1 cut(s) 440
Eco91I GGTNACC 2 cut(s) 1790, 2581
EcoICRI GAGCTC 2 cut(s) 2158, 2215
EcoO65I GGTNACC 2 cut(s) 1790, 2581
EcoRII CCWGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 1615
EcoT22I ATGCAT 3 cut(s) 1087, 1834, 1924
EcoT38I GRGCYC 2 cut(s) 2160, 2217
ErhI CCWWGG 1 cut(s) 1615
FalI AAGNNNNNCTT 4 cut(s) 2517, 2549, 2529, 2561
FauI CCCGC 3 cut(s) 122, 334, 625
FauNDI CATATG 3 cut(s) 2094, 2274, 2598
FbaI TGATCA 2 cut(s) 351, 1299
Fnu4HI GCNGC 3 cut(s) 1840, 2335, 2361
FokI GGATG 9 cut(s) 92, 539, 854, 931, 1121, 1264, 1898, 2186, 2601
FriOI GRGCYC 2 cut(s) 2160, 2217
Fsp4HI GCNGC 3 cut(s) 1840, 2335, 2361
FspBI CTAG 5 cut(s) 960, 990, 1023, 1155, 1616
FspI TGCGCA 1 cut(s) 2497
GlaI GCGC 5 cut(s) 861, 1239, 1985, 2190, 2497
GluI GCNGC 3 cut(s) 1840, 2335, 2361
GsaI CCCAGC 2 cut(s) 97, 798
GsuI CTGGAG 1 cut(s) 542
HaeII RGCGCY 1 cut(s) 1241
HaeIII GGCC 1 cut(s) 324
HapII CCGG 3 cut(s) 321, 382, 1279
HgaI GACGC 2 cut(s) 386, 608
HhaI GCGC 5 cut(s) 862, 1240, 1986, 2191, 2498
Hin1I GRCGYC 1 cut(s) 378
Hin6I GCGC 5 cut(s) 860, 1238, 1984, 2189, 2496
HinP1I GCGC 5 cut(s) 860, 1238, 1984, 2189, 2496
HinfI GANTC 7 cut(s) 775, 1135, 1151, 1195, 1457, 1907, 1961
HpaII CCGG 3 cut(s) 321, 382, 1279
HphI GGTGA 9 cut(s) 10, 19, 94, 544, 577, 608, 736, 1263, 1504
Hpy188I TCNGA 3 cut(s) 1170, 1761, 2575
Hpy188III TCNNGA 7 cut(s) 491, 1034, 1064, 1244, 1379, 2534, 2618
Hpy99I CGWCG 1 cut(s) 380
HpyCH4III ACNGT 9 cut(s) 271, 578, 1397, 1412, 1607, 1699, 1817, 2134, 2587
HpyCH4IV ACGT 3 cut(s) 1076, 1181, 1706
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 5 cut(s) 440, 1575, 1758, 2574, 2619
HpySE526I ACGT 3 cut(s) 1076, 1181, 1706
Hsp92I GRCGYC 1 cut(s) 378
HspAI GCGC 5 cut(s) 860, 1238, 1984, 2189, 2496
Ksp22I TGATCA 2 cut(s) 351, 1299
Kzo9I GATC 5 cut(s) 351, 534, 1299, 1929, 2637
LguI GCTCTTC 2 cut(s) 104, 2060
LmnI GCTCC 4 cut(s) 342, 405, 420, 2163
Lsp1109I GCAGC 2 cut(s) 1851, 2321
LweI GCATC 9 cut(s) 717, 847, 1242, 1485, 1534, 1792, 1984, 2028, 2558
MaeI CTAG 5 cut(s) 960, 990, 1023, 1155, 1616
MaeII ACGT 3 cut(s) 1076, 1181, 1706
MaeIII GTNAC 9 cut(s) 596, 998, 1072, 1269, 1517, 1709, 1790, 2581, 2603
MalI GATC 5 cut(s) 353, 536, 1301, 1931, 2639
MboI GATC 5 cut(s) 351, 534, 1299, 1929, 2637
MhlI GDGCHC 3 cut(s) 1227, 2160, 2217
MlyI GAGTC 1 cut(s) 1970
MmeI TCCRAC 2 cut(s) 67, 270
Mph1103I ATGCAT 3 cut(s) 1087, 1834, 1924
MroXI GAANNNNTTC 1 cut(s) 1194
MseI TTAA 7 cut(s) 930, 1676, 1722, 1854, 1878, 2325, 2547
MslI CAYNNNNRTG 3 cut(s) 347, 2184, 2369
MspA1I CMGCKG 1 cut(s) 2117
MspI CCGG 3 cut(s) 321, 382, 1279
MspR9I CCNGG 2 cut(s) 382, 392
Mva1269I GAATGC 2 cut(s) 574, 1177
MvaI CCWGG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 321
NciI CCSGG 1 cut(s) 382
NdeI CATATG 3 cut(s) 2094, 2274, 2598
NdeII GATC 5 cut(s) 351, 534, 1299, 1929, 2637
NlaIV GGNNCC 2 cut(s) 325, 1062
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 4 cut(s) 596, 998, 1072, 1269
NsbI TGCGCA 1 cut(s) 2497
NsiI ATGCAT 3 cut(s) 1087, 1834, 1924
NspI RCATGY 1 cut(s) 1990
PciSI GCTCTTC 2 cut(s) 104, 2060
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 2 cut(s) 574, 1177
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 6 cut(s) 775, 1135, 1151, 1195, 1457, 1907
PflMI CCANNNNNTGG 1 cut(s) 1234
PfoI TCCNGGA 1 cut(s) 390
PkrI GCNGC 3 cut(s) 1841, 2336, 2362
PleI GAGTC 1 cut(s) 1969
PmaCI CACGTG 1 cut(s) 1707
PmlI CACGTG 1 cut(s) 1707
PpsI GAGTC 1 cut(s) 1969
Ppu21I YACGTR 2 cut(s) 1077, 1707
PsiI TTATAA 3 cut(s) 660, 870, 975
Psp124BI GAGCTC 2 cut(s) 2160, 2217
Psp6I CCWGG 1 cut(s) 390
PspCI CACGTG 1 cut(s) 1707
PspEI GGTNACC 2 cut(s) 1790, 2581
PspFI CCCAGC 2 cut(s) 93, 794
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 2 cut(s) 325, 1062
PspPI GGNCC 3 cut(s) 323, 394, 1036
PstI CTGCAG 2 cut(s) 1841, 1906
PstNI CAGNNNCTG 1 cut(s) 1416
PvuII CAGCTG 1 cut(s) 2117
RsaI GTAC 5 cut(s) 852, 1079, 1814, 1819, 2109
RsaNI GTAC 5 cut(s) 851, 1078, 1813, 1818, 2108
RseI CAYNNNNRTG 3 cut(s) 347, 2184, 2369
SacI GAGCTC 2 cut(s) 2160, 2217
SapI GCTCTTC 2 cut(s) 104, 2060
SaqAI TTAA 7 cut(s) 930, 1676, 1722, 1854, 1878, 2325, 2547
SatI GCNGC 3 cut(s) 1840, 2335, 2361
Sau3AI GATC 5 cut(s) 351, 534, 1299, 1929, 2637
Sau96I GGNCC 3 cut(s) 323, 394, 1036
SchI GAGTC 1 cut(s) 1970
ScrFI CCNGG 2 cut(s) 382, 392
SduI GDGCHC 3 cut(s) 1227, 2160, 2217
SfaNI GCATC 9 cut(s) 717, 847, 1242, 1485, 1534, 1792, 1984, 2028, 2558
SfcI CTRYAG 4 cut(s) 577, 1695, 1837, 1902
SinI GGWCC 2 cut(s) 394, 1036
SmiMI CAYNNNNRTG 3 cut(s) 347, 2184, 2369
SmlI CTYRAG 3 cut(s) 1443, 1463, 2162
SmoI CTYRAG 3 cut(s) 1443, 1463, 2162
SspI AATATT 1 cut(s) 1852
SspMI CTAG 5 cut(s) 960, 990, 1023, 1155, 1616
SstI GAGCTC 2 cut(s) 2160, 2217
StyD4I CCNGG 2 cut(s) 380, 390
StyI CCWWGG 1 cut(s) 1615
TaaI ACNGT 9 cut(s) 271, 578, 1397, 1412, 1607, 1699, 1817, 2134, 2587
TaiI ACGT 3 cut(s) 1079, 1184, 1709
TaqI TCGA 8 cut(s) 513, 627, 1046, 1407, 1539, 1932, 2592, 2640
TauI GCSGC 1 cut(s) 2363
TfiI GAWTC 6 cut(s) 775, 1135, 1151, 1195, 1457, 1907
Tru1I TTAA 7 cut(s) 930, 1676, 1722, 1854, 1878, 2325, 2547
Tru9I TTAA 7 cut(s) 930, 1676, 1722, 1854, 1878, 2325, 2547
TscAI CASTG 6 cut(s) 1316, 1391, 1402, 1665, 2139, 2305
TseFI GTSAC 4 cut(s) 596, 998, 1072, 1269
TseI GCWGC 2 cut(s) 1839, 2334
Tsp45I GTSAC 4 cut(s) 596, 998, 1072, 1269
TspGWI ACGGA 1 cut(s) 1934
TspRI CASTG 6 cut(s) 1316, 1391, 1402, 1665, 2139, 2305
Van91I CCANNNNNTGG 1 cut(s) 1234
VneI GTGCAC 1 cut(s) 1223
VpaK11BI GGWCC 2 cut(s) 394, 1036
XapI RAATTY 3 cut(s) 476, 922, 1775
XceI RCATGY 1 cut(s) 1990
XmaJI CCTAGG 1 cut(s) 1615
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 5 cut(s) 960, 990, 1023, 1155, 1616
Zsp2I ATGCAT 3 cut(s) 1087, 1834, 1924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.