RchiOBHm_Chr1g0329241

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001743
Physical Location & Seq
Reverse (-)
18721555 .. 18725936
4382 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55858

Sequence Viewer

Length: 2700 bp
ATGAGGAGAAAACCCATTCTCCCAAGCAGCAGCAGCAGCAGCAGGGCCTTGTTTCTCCACCTCAATTCCAAACGCTTCTTCTCCTTCACTGCTTCCGCTTCCGCTTCTGAGCCAGTCCTCGACGATCTCCCCTCTCAGCTCTTGTCCATCCTCTCCCAACCCAATTGGCAAAGACACCCCTCCCTCAAACCCCTAATCCCCTCCATATCCCCCTCCCATGTCTCCTCCCTCTTCTCCCTCAACCACCACCTCCCTCCCCAAACCGCCCTCGCCTTCTTCAACTGGATCGCCCTCAAACCCAACTTCACCCACACCGTCCACTCCCACTCTTCTCTCCTCTCCCTTCTCCTCCCCAACCCTTCCTTCCTCTCCGTCGCCGAAAAGATCCGCATTTCCATGATCAAGTCCTCCACCTGCCCCCCTGACGCCCTCTTCGTCCTCCACCATCTCCGCTACCTGAACAAGACCCACTTCAAGCTCACCCTCAGGTCATACAACTTTCTTCTCATGTCATTGTCCAAGTTTTCGCTGTTTGATGATTTAAAAACTGTGTATATGGAGATGTTGGAGGATAAGGTGTCCCCCAATTTGCATACATTTAACACCATGGTCAATGCTTATTGTAAATTGGGGAATTTGGCTGAGGCAGAGGTGTATTTCAGTAAGATAGGGCAGGCCGGATTGCGGCCCGATACTTTTAGCTACACGTCTTTGATACTGGGGCATTGTAGGAATAAGGATGTGGACAGCGCTTATAGGGTGTTTAGGGTAATGCCACAGAAGGAGTGTCGGAGAAATGAGGTTTCGTATACGAATCTGATACATGGGTTGTGTGAGGCGGACCGGATTGGTGAGGCTTTTAAGTTGTTTTCGCAGATGGGGGAGGATAATTGTCAACCGACTGTCCGCACGTTTACAGTTCTTATCTCTGCATTTTGTAGATTGGGGAAGAAGTCAGAAGCAATGAATTTGTTTAAAGAGATGAGGGAAAAAGGTTGTCAACCGAATGCTCATACTTATACGGTGCTCATTGATAGTATGTGCAAGGAGAATAAGCTAGGTGAGGCTAGGAAGTTGCTGAATGAGATGTTGGAGAAACGGTTGGTTCCTACTGTAGTCACATACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCAGTTGACGCTGCAATTGATATTAAGGCTTTGATGGAATCAAATAAATGTTGTCCAAATGCTCGAACGTACAATGAATTAATTTTTGGGTTTTGTAAAAGGAAAGATGTAAACCAGGCGATGGCATTGCTCGCTAAGATGCTCGATCTGAAGCTCTCACCTAGTGTGATTACGTATAACTCATTAATACATGGCCACTGTAAAGCAGGTGATTTAGACTGTGCTTATAGGTTGCTTGATTTGATGAAGGACACTGGTTTGGTTCCTGACCAGTGGACCTATAGTGTTTTTATAGACAGTCTTTGTAAGAGTGGGAGACTAGAAGAAGCTCATGCCCTGTTTGATTCTCTTAAGGAGAAAGGCGTAAAGTCAAATGAAGTGACATTTACTGCTTTGATTGATGGTTACTGCAAGGTGGGGAAAATTAATGATGCCCATTCCTTGTTTGATAGGATGCTTACAGAGGGCTGTAACCCAAACACATGCACTTACAATACCTTGGTAGATGGATTGTGCAAAGAAGGAAAATTGCAGGATGCAATATTACTGGTCGAGAAGATGTTAAGTACAGGCCTGACGCATGCACCACATACTTATTCTATACTGATCAAACATATGCTGAAAGAAGGGGACTTCGGCCATGCTCATAGACTGTTCAACCAGATGGTTTGTTCTGGTAGTAAACCGGACGTATTTATTTACACTTCATTTATTCATGCATATTGCAGCATAGGGGATATAGAAGAGGCAGAAAAGCTGATGGTTAAGATGAGTGAAGAAGGAATTAGAGCAGATTCATTGACTTACACGTTATTGATTAATACATATGGACGTATGGGACTACTAGATTCTGCATTTGGTGTTCTTAAGCGCATGTTTGATGCTTGCTGCGATCCTTCTCACTATACCTATTCTTTCCTGATCAAACATCTTTTGCGCTCGAAGACGAATGACGATATAGTGAGACTTGATTTGGCCTCAAGCTTCATTGATATTGCTGATGTATGGAAGACAATGGATTATCAAAATGCTTTAGATCTGTTTGACAAGATGGTTGAACATGGCTGTGCACCCAATGGCAACACATATGAAAAGCTTATAATAGGTCTTTGCAAAGAGGGGCGCTTGGAAGTAGCCCAGAGGCTATATGTTCATATGAGAGATGGGCGGATTTCTCCCAGCCAGGATATTTATCATTCTCTTATTAATTGTTGCTGTCAGTTGCAAGTGTATGGAGAGGCGGCAAACCTGCTGGATACGATGATTGAGGATGGTTATTTACCAACATTAGAGTCTTCCAAGTTGCTTGTATGTGGGCTATTCATTGAGGAGAATATCGAGAAGGCAAAAGCCGTTTTCTGTAGTTTGCTCCGTTGTGAGTATAACTTTGATGAAGTAGCTTGGAAAGTTCTCCATGATGGTTTACTTAGGAGGGGTCTTGTCAATAGATGCTCTGAGTTGATAACCATCATGGAGCAGATGGGTTGCAAGCTTCATCCTCAGACATATTCAATGCTGATTGAGGGAATTGATGGAACATAA

Protein Analysis

899

Amino Acids

101.44

Weight (kDa)

7.01

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 164 - 209 3e-07 PPR repeat family
PPR_1 PF12854 193 - 220 3.2e-07 PPR repeat
PPR_2 PF13041 195 - 244 7.7e-11 PPR repeat family
PPR_1 PF12854 227 - 258 2.9e-09 PPR repeat
PPR_2 PF13041 230 - 278 1.8e-13 PPR repeat family
PPR_long PF17177 246 - 321 1.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 261 - 293 1.1e-08 PPR repeat
PPR_2 PF13041 266 - 314 4.1e-16 PPR repeat family
PPR PF01535 268 - 298 8.5e-06 PPR repeat
PPR_3 PF13812 288 - 346 6.1e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 297 - 329 1e-09 PPR repeat
PPR PF01535 304 - 333 6.5e-09 PPR repeat
PPR_2 PF13041 308 - 349 2.4e-15 PPR repeat family
PPR_long PF17177 320 - 401 2.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 331 - 363 1.6e-11 PPR repeat
PPR PF01535 339 - 367 2.7e-06 PPR repeat
PPR_2 PF13041 339 - 376 1.1e-09 PPR repeat family
PPR_3 PF13812 339 - 382 3.4e-06 Pentatricopeptide repeat domain
PPR_3 PF13812 358 - 414 2.3e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 367 - 394 5.7e-10 PPR repeat
PPR_2 PF13041 370 - 419 9.8e-16 PPR repeat family
PPR PF01535 373 - 403 9e-06 PPR repeat
PPR_long PF17177 398 - 481 4.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 403 - 433 1.1e-08 PPR repeat
PPR_2 PF13041 405 - 453 4.5e-13 PPR repeat family
PPR_3 PF13812 429 - 485 7.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 438 - 469 3e-13 PPR repeat
PPR_2 PF13041 440 - 489 1.4e-16 PPR repeat family
PPR PF01535 443 - 472 3.7e-07 PPR repeat
PPR_1 PF12854 472 - 502 3.1e-09 PPR repeat
PPR PF01535 479 - 508 7.2e-07 PPR repeat
PPR_2 PF13041 483 - 524 1.6e-12 PPR repeat family
PPR_long PF17177 493 - 597 4.2e-09 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 496 - 607 6.5e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 499 - 554 6.9e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 506 - 538 3.6e-11 PPR repeat
PPR_2 PF13041 511 - 559 2.2e-18 PPR repeat family
PPR PF01535 513 - 543 9.3e-09 PPR repeat
PPR_1 PF12854 542 - 573 1e-13 PPR repeat
PPR_2 PF13041 545 - 591 3.9e-11 PPR repeat family
PPR PF01535 549 - 577 3.6e-06 PPR repeat
PPR_2 PF13041 584 - 621 1.1e-07 PPR repeat family
PPR_3 PF13812 603 - 664 2.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 612 - 644 5e-09 PPR repeat
PPR_2 PF13041 615 - 662 1e-12 PPR repeat family
PPR PF01535 619 - 648 2.1e-06 PPR repeat
PPR_3 PF13812 639 - 695 7.5e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 655 - 697 9.4e-07 PPR repeat family
PPR_long PF17177 719 - 848 9.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 726 - 758 1.1e-06 PPR repeat family
PPR_3 PF13812 733 - 791 1.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 748 - 793 1.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2258
AarI CACCTGC 2 cut(s) 422, 1355
Acc36I ACCTGC 3 cut(s) 422, 1355, 2415
AccB7I CCANNNNNTGG 1 cut(s) 1279
AccI GTMKAC 1 cut(s) 809
AclWI GGATC 3 cut(s) 293, 379, 2045
AcoI YGGCCR 2 cut(s) 1351, 1795
AcsI RAATTY 2 cut(s) 634, 967
AcuI CTGAAG 1 cut(s) 1328
AcyI GRCGYC 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 1322
AfaI GTAC 2 cut(s) 1229, 1726
AfeI AGCGCT 1 cut(s) 751
AfiI CCNNNNNNNGG 2 cut(s) 684, 1279
AflII CTTAAG 2 cut(s) 1508, 2024
AflIII ACRYGT 2 cut(s) 705, 1965
AgsI TTSAA 5 cut(s) 280, 475, 1816, 2216, 2670
AjiI CACGTC 1 cut(s) 708
AjnI CCWGG 2 cut(s) 1272, 2340
AjuI GAANNNNNNNTTGG 8 cut(s) 62, 94, 347, 379, 1073, 1105, 1227, 1259
Alw21I GWGCWC 2 cut(s) 1029, 2230
Alw26I GTCTC 3 cut(s) 226, 1468, 2116
Alw44I GTGCAC 1 cut(s) 2226
AlwI GGATC 3 cut(s) 293, 379, 2045
Aor51HI AGCGCT 1 cut(s) 751
AoxI GGCC 7 cut(s) 45, 675, 686, 1351, 1729, 1795, 2133
ApaLI GTGCAC 1 cut(s) 2226
ApeKI GCWGC 8 cut(s) 27, 30, 33, 36, 39, 1169, 1884, 2046
ApoI RAATTY 2 cut(s) 634, 967
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AseI ATTAAT 5 cut(s) 1238, 1343, 1584, 1977, 2364
AspLEI GCGC 4 cut(s) 752, 2031, 2097, 2283
AspS9I GGNCC 4 cut(s) 45, 687, 841, 1434
AsuHPI GGTGA 6 cut(s) 298, 472, 863, 1073, 1308, 1379
AvaII GGWCC 2 cut(s) 841, 1434
AxyI CCTNAGG 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 2230
BaeI ACNNNNGTAYC 2 cut(s) 812, 845
BalI TGGCCA 1 cut(s) 1353
BbsI GAAGAC 3 cut(s) 2108, 2174, 2445
Bbv12I GWGCWC 2 cut(s) 1029, 2230
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 8 cut(s) 39, 42, 45, 48, 51, 1156, 1896, 2033
BceAI ACGGC 1 cut(s) 2495
BcgI CGANNNNNNTGC 2 cut(s) 1267, 1301
BciT130I CCWGG 2 cut(s) 1274, 2342
BciVI GTATCC 1 cut(s) 2407
BclI TGATCA 3 cut(s) 399, 1764, 2079
BcoDI GTCTC 3 cut(s) 226, 1468, 2116
BfaI CTAG 5 cut(s) 1058, 1068, 1320, 1478, 2003
BfmI CTRYAG 3 cut(s) 1113, 1438, 2518
BfoI RGCGCY 2 cut(s) 753, 2284
BfrI CTTAAG 2 cut(s) 1508, 2024
BfuAI ACCTGC 3 cut(s) 422, 1355, 2415
BfuI GTATCC 1 cut(s) 2407
BglII AGATCT 1 cut(s) 2194
Bme1390I CCNGG 2 cut(s) 1274, 2342
Bme18I GGWCC 2 cut(s) 841, 1434
BmgBI CACGTC 1 cut(s) 708
BmgT120I GGNCC 4 cut(s) 45, 687, 841, 1434
BmiI GGNNCC 2 cut(s) 1107, 1422
BmrFI CCNGG 2 cut(s) 1274, 2342
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 6 cut(s) 1287, 1579, 1602, 1684, 2029, 2597
BmuI ACTGGG 1 cut(s) 728
BpiI GAAGAC 3 cut(s) 2108, 2174, 2445
Bpu10I CCTNAGC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 2122
BsaAI YACGTR 1 cut(s) 1332
BsaBI GATNNNNATC 2 cut(s) 2349, 2624
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 606, 1656
BsaWI WCCGGW 2 cut(s) 843, 1843
BsaXI ACNNNNNCTCC 3 cut(s) 33, 1085, 1115
Bsc4I CCNNNNNNNGG 2 cut(s) 684, 1279
Bse1I ACTGG 6 cut(s) 113, 287, 723, 1417, 1429, 1710
Bse21I CCTNAGG 1 cut(s) 485
Bse3DI GCAATG 2 cut(s) 969, 1283
Bse8I GATNNNNATC 2 cut(s) 2349, 2624
BseBI CCWGG 2 cut(s) 1274, 2342
BseDI CCNNGG 2 cut(s) 606, 1656
BseGI GGATG 6 cut(s) 147, 745, 1617, 1699, 2434, 2653
BseJI GATNNNNATC 2 cut(s) 2349, 2624
BseLI CCNNNNNNNGG 2 cut(s) 684, 1279
BseMI GCAATG 2 cut(s) 969, 1283
BseMII CTCAG 6 cut(s) 99, 149, 499, 633, 2604, 2672
BseNI ACTGG 6 cut(s) 113, 287, 723, 1417, 1429, 1710
BseRI GAGGAG 5 cut(s) 19, 214, 326, 338, 2501
BseSI GKGCMC 1 cut(s) 2230
BseXI GCAGC 8 cut(s) 39, 42, 45, 48, 51, 1156, 1896, 2033
BseYI CCCAGC 1 cut(s) 2336
BshFI GGCC 7 cut(s) 47, 677, 688, 1353, 1731, 1797, 2135
BsiHKAI GWGCWC 2 cut(s) 1029, 2230
BsiSI CCGG 3 cut(s) 678, 844, 1844
BslFI GGGAC 3 cut(s) 565, 1802, 2010
BslI CCNNNNNNNGG 2 cut(s) 684, 1279
BsmAI GTCTC 3 cut(s) 226, 1468, 2116
BsmFI GGGAC 3 cut(s) 565, 1802, 2010
BsmI GAATGC 1 cut(s) 1012
BsnI GGCC 7 cut(s) 47, 677, 688, 1353, 1731, 1797, 2135
Bsp1286I GDGCHC 2 cut(s) 1029, 2230
Bsp143I GATC 9 cut(s) 124, 285, 384, 399, 1303, 1764, 2050, 2079, 2194
Bsp19I CCATGG 1 cut(s) 606
BspANI GGCC 7 cut(s) 47, 677, 688, 1353, 1731, 1797, 2135
BspCNI CTCAG 6 cut(s) 100, 148, 498, 634, 2605, 2671
BspLI GGNNCC 2 cut(s) 1107, 1422
BspMI ACCTGC 3 cut(s) 422, 1355, 2415
BspPI GGATC 3 cut(s) 293, 379, 2045
BspTI CTTAAG 2 cut(s) 1508, 2024
BsrDI GCAATG 2 cut(s) 969, 1283
BsrI ACTGG 6 cut(s) 113, 287, 723, 1417, 1429, 1710
BssECI CCNNGG 2 cut(s) 606, 1656
BssMI GATC 9 cut(s) 124, 285, 384, 399, 1303, 1764, 2050, 2079, 2194
BssNAI GTATAC 1 cut(s) 810
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 2 cut(s) 606, 1656
Bst1107I GTATAC 1 cut(s) 810
Bst2UI CCWGG 2 cut(s) 1274, 2342
Bst6I CTCTTC 4 cut(s) 236, 334, 437, 1896
BstACI GRCGYC 1 cut(s) 426
BstAFI CTTAAG 2 cut(s) 1508, 2024
BstBAI YACGTR 1 cut(s) 1332
BstC8I GCNNGC 5 cut(s) 675, 1290, 1740, 2044, 2648
BstDEI CTNAG 8 cut(s) 108, 135, 485, 642, 1293, 2585, 2613, 2658
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 6 cut(s) 147, 745, 1617, 1699, 2434, 2653
BstH2I RGCGCY 2 cut(s) 753, 2284
BstHHI GCGC 4 cut(s) 752, 2031, 2097, 2283
BstKTI GATC 9 cut(s) 127, 288, 387, 402, 1306, 1767, 2053, 2082, 2197
BstMAI GTCTC 3 cut(s) 226, 1468, 2116
BstMBI GATC 9 cut(s) 124, 285, 384, 399, 1303, 1764, 2050, 2079, 2194
BstMWI GCNNNNNNNGC 5 cut(s) 33, 36, 39, 1166, 1289
BstNI CCWGG 2 cut(s) 1274, 2342
BstNSI RCATGY 3 cut(s) 1644, 1742, 2035
BstSCI CCNGG 2 cut(s) 1272, 2340
BstSFI CTRYAG 3 cut(s) 1113, 1438, 2518
BstSLI GKGCMC 1 cut(s) 2230
BstSNI TACGTA 1 cut(s) 1332
BstV1I GCAGC 8 cut(s) 39, 42, 45, 48, 51, 1156, 1896, 2033
BstV2I GAAGAC 3 cut(s) 2108, 2174, 2445
BstX2I RGATCY 2 cut(s) 384, 2194
BstYI RGATCY 2 cut(s) 384, 2194
BstZ17I GTATAC 1 cut(s) 810
Bsu36I CCTNAGG 1 cut(s) 485
BsuI GTATCC 1 cut(s) 2407
BsuRI GGCC 7 cut(s) 47, 677, 688, 1353, 1731, 1797, 2135
BtgI CCRYGG 1 cut(s) 606
BtgZI GCGATG 1 cut(s) 1292
BtrI CACGTC 1 cut(s) 708
BtsCI GGATG 6 cut(s) 147, 745, 1617, 1699, 2434, 2653
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 4 cut(s) 87, 1354, 1410, 1436
BveI ACCTGC 3 cut(s) 422, 1355, 2415
Cac8I GCNNGC 5 cut(s) 675, 1290, 1740, 2044, 2648
CfoI GCGC 4 cut(s) 752, 2031, 2097, 2283
Cfr13I GGNCC 4 cut(s) 45, 687, 841, 1434
CpoI CGGWCCG 1 cut(s) 841
CseI GACGC 3 cut(s) 434, 1175, 1744
Csp6I GTAC 2 cut(s) 1228, 1725
CspI CGGWCCG 1 cut(s) 841
CviQI GTAC 2 cut(s) 1228, 1725
DdeI CTNAG 8 cut(s) 108, 135, 485, 642, 1293, 2585, 2613, 2658
DpnI GATC 9 cut(s) 126, 287, 386, 401, 1305, 1766, 2052, 2081, 2196
DpnII GATC 9 cut(s) 124, 285, 384, 399, 1303, 1764, 2050, 2079, 2194
DraI TTTAAA 2 cut(s) 543, 976
DraIII CACNNNGTG 1 cut(s) 1322
EaeI YGGCCR 2 cut(s) 1351, 1795
Eam1104I CTCTTC 4 cut(s) 236, 334, 437, 1896
EarI CTCTTC 4 cut(s) 236, 334, 437, 1896
EciI GGCGGA 2 cut(s) 854, 2341
Eco105I TACGTA 1 cut(s) 1332
Eco130I CCWWGG 2 cut(s) 606, 1656
Eco147I AGGCCT 1 cut(s) 1731
Eco47I GGWCC 2 cut(s) 841, 1434
Eco47III AGCGCT 1 cut(s) 751
Eco57I CTGAAG 1 cut(s) 1328
Eco81I CCTNAGG 1 cut(s) 485
EcoO109I RGGNCCY 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 1272, 2340
EcoT14I CCWWGG 2 cut(s) 606, 1656
EcoT22I ATGCAT 2 cut(s) 1132, 1879
ErhI CCWWGG 2 cut(s) 606, 1656
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 3 cut(s) 565, 1802, 2010
FauNDI CATATG 4 cut(s) 1773, 1984, 2245, 2313
FbaI TGATCA 3 cut(s) 399, 1764, 2079
FblI GTMKAC 1 cut(s) 809
FokI GGATG 6 cut(s) 134, 752, 1624, 1706, 2441, 2640
FspBI CTAG 5 cut(s) 1058, 1068, 1320, 1478, 2003
GlaI GCGC 4 cut(s) 751, 2030, 2096, 2282
GsaI CCCAGC 1 cut(s) 2340
HaeII RGCGCY 2 cut(s) 753, 2284
HaeIII GGCC 7 cut(s) 47, 677, 688, 1353, 1731, 1797, 2135
HapII CCGG 3 cut(s) 678, 844, 1844
HgaI GACGC 3 cut(s) 434, 1175, 1744
HhaI GCGC 4 cut(s) 752, 2031, 2097, 2283
Hin1I GRCGYC 1 cut(s) 426
Hin6I GCGC 4 cut(s) 750, 2029, 2095, 2281
HinP1I GCGC 4 cut(s) 750, 2029, 2095, 2281
HincII GTYRAC 3 cut(s) 896, 1001, 1165
HindII GTYRAC 3 cut(s) 896, 1001, 1165
HindIII AAGCTT 3 cut(s) 2140, 2252, 2648
HinfI GANTC 6 cut(s) 814, 1196, 1502, 1952, 2006, 2450
HpaII CCGG 3 cut(s) 678, 844, 1844
HphI GGTGA 6 cut(s) 298, 472, 863, 1073, 1308, 1379
Hpy188I TCNGA 7 cut(s) 109, 792, 819, 958, 1308, 2614, 2661
Hpy188III TCNNGA 4 cut(s) 1424, 1711, 2077, 2497
Hpy99I CGWCG 2 cut(s) 125, 377
HpyCH4IV ACGT 7 cut(s) 707, 911, 1226, 1331, 1848, 1967, 1990
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 36, 39, 1166, 1289
HpyF3I CTNAG 8 cut(s) 108, 135, 485, 642, 1293, 2585, 2613, 2658
HpySE526I ACGT 7 cut(s) 707, 911, 1226, 1331, 1848, 1967, 1990
Hsp92I GRCGYC 1 cut(s) 426
HspAI GCGC 4 cut(s) 750, 2029, 2095, 2281
Ksp22I TGATCA 3 cut(s) 399, 1764, 2079
Kzo9I GATC 9 cut(s) 124, 285, 384, 399, 1303, 1764, 2050, 2079, 2194
LmnI GCTCC 3 cut(s) 1157, 2532, 2632
Lsp1109I GCAGC 8 cut(s) 39, 42, 45, 48, 51, 1156, 1896, 2033
LweI GCATC 6 cut(s) 1287, 1579, 1602, 1684, 2029, 2597
MaeI CTAG 5 cut(s) 1058, 1068, 1320, 1478, 2003
MaeII ACGT 7 cut(s) 707, 911, 1226, 1331, 1848, 1967, 1990
MaeIII GTNAC 4 cut(s) 1117, 1537, 1562, 1628
MalI GATC 9 cut(s) 126, 287, 386, 401, 1305, 1766, 2052, 2081, 2196
MboI GATC 9 cut(s) 124, 285, 384, 399, 1303, 1764, 2050, 2079, 2194
MfeI CAATTG 2 cut(s) 163, 1173
MflI RGATCY 2 cut(s) 384, 2194
MhlI GDGCHC 2 cut(s) 1029, 2230
MlsI TGGCCA 1 cut(s) 1353
MluNI TGGCCA 1 cut(s) 1353
MlyI GAGTC 1 cut(s) 2459
MmeI TCCRAC 3 cut(s) 546, 770, 1071
Mox20I TGGCCA 1 cut(s) 1353
Mph1103I ATGCAT 2 cut(s) 1132, 1879
MscI TGGCCA 1 cut(s) 1353
MslI CAYNNNNRTG 2 cut(s) 395, 2223
Msp20I TGGCCA 1 cut(s) 1353
MspCI CTTAAG 2 cut(s) 1508, 2024
MspI CCGG 3 cut(s) 678, 844, 1844
MspR9I CCNGG 2 cut(s) 1274, 2342
MunI CAATTG 2 cut(s) 163, 1173
Mva1269I GAATGC 1 cut(s) 1012
MvaI CCWGG 2 cut(s) 1274, 2342
MwoI GCNNNNNNNGC 5 cut(s) 33, 36, 39, 1166, 1289
NcoI CCATGG 1 cut(s) 606
NdeI CATATG 4 cut(s) 1773, 1984, 2245, 2313
NdeII GATC 9 cut(s) 124, 285, 384, 399, 1303, 1764, 2050, 2079, 2194
NlaIV GGNNCC 2 cut(s) 1107, 1422
NmuCI GTSAC 2 cut(s) 1117, 1537
NsiI ATGCAT 2 cut(s) 1132, 1879
NspI RCATGY 3 cut(s) 1644, 1742, 2035
PaeI GCATGC 1 cut(s) 1742
PaqCI CACCTGC 2 cut(s) 422, 1355
PceI AGGCCT 1 cut(s) 1731
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 1 cut(s) 1012
PfeI GAWTC 5 cut(s) 814, 1196, 1502, 1952, 2006
PflMI CCANNNNNTGG 1 cut(s) 1279
PleI GAGTC 1 cut(s) 2458
PpsI GAGTC 1 cut(s) 2458
Ppu21I YACGTR 1 cut(s) 1332
PshBI ATTAAT 5 cut(s) 1238, 1343, 1584, 1977, 2364
PsiI TTATAA 1 cut(s) 2258
Psp6I CCWGG 2 cut(s) 1272, 2340
PspFI CCCAGC 1 cut(s) 2336
PspGI CCWGG 2 cut(s) 1272, 2340
PspN4I GGNNCC 2 cut(s) 1107, 1422
PspPI GGNCC 4 cut(s) 45, 687, 841, 1434
PsuI RGATCY 2 cut(s) 384, 2194
RsaI GTAC 2 cut(s) 1229, 1726
RsaNI GTAC 2 cut(s) 1228, 1725
RseI CAYNNNNRTG 2 cut(s) 395, 2223
Rsr2I CGGWCCG 1 cut(s) 841
RsrII CGGWCCG 1 cut(s) 841
Sau3AI GATC 9 cut(s) 124, 285, 384, 399, 1303, 1764, 2050, 2079, 2194
Sau96I GGNCC 4 cut(s) 45, 687, 841, 1434
SchI GAGTC 1 cut(s) 2459
ScrFI CCNGG 2 cut(s) 1274, 2342
SduI GDGCHC 2 cut(s) 1029, 2230
SfaNI GCATC 6 cut(s) 1287, 1579, 1602, 1684, 2029, 2597
SfcI CTRYAG 3 cut(s) 1113, 1438, 2518
SinI GGWCC 2 cut(s) 841, 1434
SmiMI CAYNNNNRTG 2 cut(s) 395, 2223
SmlI CTYRAG 3 cut(s) 1508, 2024, 2137
SmoI CTYRAG 3 cut(s) 1508, 2024, 2137
SnaBI TACGTA 1 cut(s) 1332
SphI GCATGC 1 cut(s) 1742
SseBI AGGCCT 1 cut(s) 1731
SspI AATATT 1 cut(s) 1701
SspMI CTAG 5 cut(s) 1058, 1068, 1320, 1478, 2003
StuI AGGCCT 1 cut(s) 1731
StyD4I CCNGG 2 cut(s) 1272, 2340
StyI CCWWGG 2 cut(s) 606, 1656
TaiI ACGT 7 cut(s) 710, 914, 1229, 1334, 1851, 1970, 1993
TaqI TCGA 6 cut(s) 120, 1222, 1302, 1710, 2099, 2496
TatI WGTACW 1 cut(s) 1724
TauI GCSGC 2 cut(s) 688, 2402
TfiI GAWTC 5 cut(s) 814, 1196, 1502, 1952, 2006
TscAI CASTG 4 cut(s) 94, 1361, 1417, 1436
TseFI GTSAC 2 cut(s) 1117, 1537
TseI GCWGC 8 cut(s) 27, 30, 33, 36, 39, 1169, 1884, 2046
Tsp45I GTSAC 2 cut(s) 1117, 1537
TspGWI ACGGA 2 cut(s) 361, 2519
TspRI CASTG 4 cut(s) 94, 1361, 1417, 1436
Van91I CCANNNNNTGG 1 cut(s) 1279
Vha464I CTTAAG 2 cut(s) 1508, 2024
VneI GTGCAC 1 cut(s) 2226
VpaK11BI GGWCC 2 cut(s) 841, 1434
VspI ATTAAT 5 cut(s) 1238, 1343, 1584, 1977, 2364
XapI RAATTY 2 cut(s) 634, 967
XceI RCATGY 3 cut(s) 1644, 1742, 2035
XmiI GTMKAC 1 cut(s) 809
XspI CTAG 5 cut(s) 1058, 1068, 1320, 1478, 2003
Zsp2I ATGCAT 2 cut(s) 1132, 1879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.