Rorug01G0077300

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
12599770 .. 12628808
29039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0077300.1

Sequence Viewer

Length: 1566 bp
ATGCAAATGGAAGTGTCATTAGGCAGCATAGCAGTCTCGATTGTTTTGTTGATTATAGCTTCATCATGGGCATGGAGGGTGCTGAATTGGGTGTGGTTGAAGCCAAAGAAGCTAGAAAACTGTCTGAGGCAGCAAGGTCTTGCCGGAAACTCGTACCGCCTTTTGATTGGCGATCTTAAGGAGAACATCAAGGTGGTGAAGGAAGCCACTTCAAAACCCATGAACCTCTCCGATGATGTAGCCCCGCGTGTCCTGCCATATCTCCATCAAACCATTAACAAACATGGTAAGAATTCTTTCATGTGGTTTGGTACTACACCAAGGGTGACCATCATGAATCCAGACTATTTGAAAGATATATTCAACAAATATGATGATTTTGAGAAGCCACATCCTAGTCCTCTTGTCAAGTTGCTATCATACGGTATTGTAAACCTCGAGGGAGAAAAATGGGTTAAACGGAGAAAGCTTATTAACCCAGCATTCCATATCGAGAAGCTAAAGAATATGTTGCCAGCATTTTATCAAAGCTGCACTGATATGATTAGCAATTGGGAGATCATGGTGTCGAAGGAGGGATCATGTGAATTGGATATTTGGGCTTTTCTTCAAAATATGTCAGGAGATGTGATTTCTAGGACAGCATTTGGTAGTAGTTATGAAGAAGGGAGAACAATATTTGAACTCCAGAAAGAACAAGTACAACTCTTAAGTAAAGCCTTACTCATTGTTTTCATTCCAGGATTGAGGTTTCTACCAACAGAGTTGAATAGGAGGATGAAGGCAATTAGCAAAGAAATAGAAGCAACATTGAAGCATATTATTAGTAAAAAAGAGGAGGCAATGAAAACTGGTGATGAAGCCTCTAAGAATGACTTATTAGGGATACTTCTGGAATCCAATTGGAAAGAAATTCGACAGTATGGGGGGAACAAGAATGTTGGAATGAGCATTGAAGACGTGATTGGAGAATGTAAGCTGTTTTACTTTGCCGGGGCAGAGACTACCTCAATCTTGCTTACTTGGACGATGATTCTACTCTGTAGATATCCAAATTGGCAGGCTCGTGCCAGAGAAGAGGTTTTTCAAGTATTTGGCAACAAGAAACCAGATTTTGATGGGCTCGTTCACCTAAAAGTTGTCACCATGATTTTATATGAGGTTCTGAGGTTATACCCACCAGTACCTGTGATGACTCGAACTGTTCAGAAGGAAACACAGCTCGGAAATTTGTTACTCCCACCTGGAGTGCAGTTGTCATTACCAATATTCCTGGTTCAGCAAGACCAACAACTGTGGGGTGAGGACGCAAAGGAATTCAACCCAGAGAGATTTTCAGAAGGAATTTCAAAGGCAACAAAGGGTCAGGTTTCATTTATCCCATTCGGATGGGGTCCTCGGATATGCATTGGACAAAACTTTGGTTTGATGGAAGCAAAAATGGCGTTGTCCTTGATATTACGTAGCTTCACATTTGAGCTTTCCCCATCCTATACTCATGGTCCAATCACGGCTATAACGATTCAACCACAATATGGTGCACACATTATCTTGCAAAAACTGTAA

Protein Analysis

521

Amino Acids

59.42

Weight (kDa)

8.93

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 88 - 497 7.3e-87 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 437
AccB7I CCANNNNNTGG 1 cut(s) 1535
AccII CGCG 1 cut(s) 247
AciI CCGC 2 cut(s) 157, 245
AclWI GGATC 1 cut(s) 586
AcsI RAATTY 5 cut(s) 292, 912, 1228, 1316, 1344
AfaI GTAC 4 cut(s) 155, 313, 702, 1185
AfiI CCNNNNNNNGG 1 cut(s) 1535
AflII CTTAAG 2 cut(s) 176, 709
AjiI CACGTC 1 cut(s) 961
AjnI CCWGG 3 cut(s) 739, 1243, 1272
AjuI GAANNNNNNNTTGG 2 cut(s) 948, 980
AluBI AGCT 9 cut(s) 59, 112, 469, 499, 531, 979, 1222, 1467, 1480
AluI AGCT 9 cut(s) 59, 112, 469, 499, 531, 979, 1222, 1467, 1480
Alw21I GWGCWC 1 cut(s) 1543
Alw26I GTCTC 2 cut(s) 40, 995
Alw44I GTGCAC 1 cut(s) 1539
AlwI GGATC 1 cut(s) 586
AlwNI CAGNNNCTG 1 cut(s) 1187
Ama87I CYCGRG 1 cut(s) 437
ApaLI GTGCAC 1 cut(s) 1539
ApeKI GCWGC 3 cut(s) 24, 130, 531
ApoI RAATTY 5 cut(s) 292, 912, 1228, 1316, 1344
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 1394, 1502
AsuC2I CCSGG 1 cut(s) 994
AsuHPI GGTGA 6 cut(s) 208, 337, 866, 1121, 1135, 1313
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 2 cut(s) 1394, 1502
BaeGI GKGCMC 1 cut(s) 1543
BanII GRGCYC 1 cut(s) 1125
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 1 cut(s) 963
Bbv12I GWGCWC 1 cut(s) 1543
BbvI GCAGC 3 cut(s) 36, 142, 518
BccI CCATC 6 cut(s) 273, 338, 1112, 1383, 1423, 1495
BceAI ACGGC 1 cut(s) 1527
BciT130I CCWGG 3 cut(s) 741, 1245, 1274
BciVI GTATCC 1 cut(s) 879
BcnI CCSGG 1 cut(s) 994
BcoDI GTCTC 2 cut(s) 40, 995
BfaI CTAG 3 cut(s) 113, 396, 636
BfmI CTRYAG 1 cut(s) 1042
BfrI CTTAAG 2 cut(s) 176, 709
BfuI GTATCC 1 cut(s) 879
BisI GCNGC 3 cut(s) 25, 131, 532
BlsI GCNGC 3 cut(s) 26, 132, 533
Bme1390I CCNGG 4 cut(s) 741, 994, 1245, 1274
Bme18I GGWCC 2 cut(s) 1394, 1502
BmeT110I CYCGRG 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 961
BmgT120I GGNCC 2 cut(s) 1394, 1502
BmiI GGNNCC 1 cut(s) 1395
BmrFI CCNGG 4 cut(s) 741, 994, 1245, 1274
BpiI GAAGAC 1 cut(s) 963
BplI GAGNNNNNCTC 2 cut(s) 992, 1024
BpmI CTGGAG 2 cut(s) 671, 1266
BpuMI CCSGG 1 cut(s) 994
BsaAI YACGTR 1 cut(s) 1463
BsaJI CCNNGG 3 cut(s) 320, 993, 1397
Bsc4I CCNNNNNNNGG 1 cut(s) 1535
Bse1I ACTGG 2 cut(s) 856, 1181
Bse3DI GCAATG 1 cut(s) 849
BseBI CCWGG 3 cut(s) 741, 1245, 1274
BseDI CCNNGG 3 cut(s) 320, 993, 1397
BseGI GGATG 4 cut(s) 391, 783, 1394, 1487
BseLI CCNNNNNNNGG 1 cut(s) 1535
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 2 cut(s) 116, 1157
BseNI ACTGG 2 cut(s) 856, 1181
BseRI GAGGAG 1 cut(s) 851
BseSI GKGCMC 1 cut(s) 1543
BseXI GCAGC 3 cut(s) 36, 142, 518
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 2 cut(s) 517, 1271
Bsh1236I CGCG 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 1543
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 2 cut(s) 144, 993
BslI CCNNNNNNNGG 1 cut(s) 1535
BsmAI GTCTC 2 cut(s) 40, 995
BsmI GAATGC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 1125, 1543
Bsp143I GATC 3 cut(s) 172, 558, 578
BspACI CCGC 2 cut(s) 157, 245
BspCNI CTCAG 2 cut(s) 117, 1158
BspFNI CGCG 1 cut(s) 247
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 1395
BspPI GGATC 1 cut(s) 586
BspTI CTTAAG 2 cut(s) 176, 709
BsrDI GCAATG 1 cut(s) 849
BsrI ACTGG 2 cut(s) 856, 1181
BssECI CCNNGG 3 cut(s) 320, 993, 1397
BssMI GATC 3 cut(s) 172, 558, 578
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 3 cut(s) 741, 1245, 1274
Bst4CI ACNGT 6 cut(s) 122, 425, 921, 1204, 1296, 1563
Bst6I CTCTTC 1 cut(s) 1071
BstAFI CTTAAG 2 cut(s) 176, 709
BstBAI YACGTR 1 cut(s) 1463
BstC8I GCNNGC 2 cut(s) 516, 1062
BstDEI CTNAG 3 cut(s) 125, 867, 1166
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 4 cut(s) 391, 783, 1394, 1487
BstFNI CGCG 1 cut(s) 247
BstKTI GATC 3 cut(s) 175, 561, 581
BstMAI GTCTC 2 cut(s) 40, 995
BstMBI GATC 3 cut(s) 172, 558, 578
BstMWI GCNNNNNNNGC 3 cut(s) 109, 253, 1442
BstNI CCWGG 3 cut(s) 741, 1245, 1274
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 4 cut(s) 739, 992, 1243, 1272
BstSFI CTRYAG 1 cut(s) 1042
BstSLI GKGCMC 1 cut(s) 1543
BstSNI TACGTA 1 cut(s) 1463
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 3 cut(s) 36, 142, 518
BstV2I GAAGAC 1 cut(s) 963
BstXI CCANNNNNNTGG 1 cut(s) 1389
BsuI GTATCC 1 cut(s) 879
BtrI CACGTC 1 cut(s) 961
BtsCI GGATG 4 cut(s) 391, 783, 1394, 1487
BtsIMutI CAGTG 1 cut(s) 534
Cac8I GCNNGC 2 cut(s) 516, 1062
CaiI CAGNNNCTG 1 cut(s) 1187
CciI TCATGA 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 1394, 1502
CseI GACGC 1 cut(s) 1316
Csp6I GTAC 4 cut(s) 154, 312, 701, 1184
CspCI CAANNNNNGTGG 2 cut(s) 1277, 1312
CviQI GTAC 4 cut(s) 154, 312, 701, 1184
DdeI CTNAG 3 cut(s) 125, 867, 1166
DpnI GATC 3 cut(s) 174, 560, 580
DpnII GATC 3 cut(s) 172, 558, 578
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
Eco105I TACGTA 1 cut(s) 1463
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 1125
Eco32I GATATC 1 cut(s) 1049
Eco47I GGWCC 2 cut(s) 1394, 1502
Eco88I CYCGRG 1 cut(s) 437
Eco91I GGTNACC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 1394
EcoO65I GGTNACC 1 cut(s) 325
EcoRI GAATTC 2 cut(s) 292, 1316
EcoRII CCWGG 3 cut(s) 739, 1243, 1272
EcoRV GATATC 1 cut(s) 1049
EcoT14I CCWWGG 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 1409
EcoT38I GRGCYC 1 cut(s) 1125
ErhI CCWWGG 1 cut(s) 320
FalI AAGNNNNNCTT 2 cut(s) 860, 892
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 25, 131, 532
FokI GGATG 4 cut(s) 378, 790, 1401, 1474
FriOI GRGCYC 1 cut(s) 1125
Fsp4HI GCNGC 3 cut(s) 25, 131, 532
FspBI CTAG 3 cut(s) 113, 396, 636
GluI GCNGC 3 cut(s) 25, 131, 532
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 671, 1266
HapII CCGG 2 cut(s) 144, 993
HgaI GACGC 1 cut(s) 1316
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 5 cut(s) 337, 896, 1033, 1195, 1522
HpaII CCGG 2 cut(s) 144, 993
HphI GGTGA 6 cut(s) 208, 337, 866, 1121, 1135, 1313
Hpy166II GTNNAC 3 cut(s) 433, 1129, 1541
Hpy188I TCNGA 8 cut(s) 126, 232, 1167, 1209, 1226, 1339, 1388, 1401
Hpy188III TCNNGA 7 cut(s) 37, 334, 341, 493, 621, 688, 893
Hpy8I GTNNAC 3 cut(s) 433, 1129, 1541
HpyAV CCTTC 6 cut(s) 193, 565, 659, 775, 1204, 1334
HpyCH4III ACNGT 6 cut(s) 122, 425, 921, 1204, 1296, 1563
HpyCH4IV ACGT 2 cut(s) 960, 1462
HpyCH4V TGCA 6 cut(s) 4, 534, 1252, 1407, 1541, 1555
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 253, 1442
HpyF3I CTNAG 3 cut(s) 125, 867, 1166
HpySE526I ACGT 2 cut(s) 960, 1462
Kzo9I GATC 3 cut(s) 172, 558, 578
Lsp1109I GCAGC 3 cut(s) 36, 142, 518
MaeI CTAG 3 cut(s) 113, 396, 636
MaeII ACGT 2 cut(s) 960, 1462
MaeIII GTNAC 3 cut(s) 325, 1141, 1233
MalI GATC 3 cut(s) 174, 560, 580
MboI GATC 3 cut(s) 172, 558, 578
MboII GAAGA 4 cut(s) 599, 674, 968, 1088
MfeI CAATTG 2 cut(s) 550, 901
MhlI GDGCHC 2 cut(s) 1125, 1543
MlyI GAGTC 1 cut(s) 1189
MmeI TCCRAC 1 cut(s) 922
Mph1103I ATGCAT 1 cut(s) 1409
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 5 cut(s) 177, 276, 456, 474, 710
MslI CAYNNNNRTG 4 cut(s) 70, 191, 539, 1387
MspCI CTTAAG 2 cut(s) 176, 709
MspI CCGG 2 cut(s) 144, 993
MspR9I CCNGG 4 cut(s) 741, 994, 1245, 1274
MunI CAATTG 2 cut(s) 550, 901
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 3 cut(s) 741, 1245, 1274
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 3 cut(s) 109, 253, 1442
NciI CCSGG 1 cut(s) 994
NdeII GATC 3 cut(s) 172, 558, 578
NlaIV GGNNCC 1 cut(s) 1395
NmuCI GTSAC 2 cut(s) 325, 1141
NsiI ATGCAT 1 cut(s) 1409
PaeR7I CTCGAG 1 cut(s) 437
PagI TCATGA 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 1517
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 4 cut(s) 337, 896, 1033, 1522
PflMI CCANNNNNTGG 1 cut(s) 1535
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 3 cut(s) 26, 132, 533
PleI GAGTC 1 cut(s) 1189
PpsI GAGTC 1 cut(s) 1189
Ppu21I YACGTR 1 cut(s) 1463
PpuMI RGGWCCY 1 cut(s) 1394
Psp5II RGGWCCY 1 cut(s) 1394
Psp6I CCWGG 3 cut(s) 739, 1243, 1272
PspEI GGTNACC 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 3 cut(s) 739, 1243, 1272
PspN4I GGNNCC 1 cut(s) 1395
PspPI GGNCC 2 cut(s) 1394, 1502
PspPPI RGGWCCY 1 cut(s) 1394
PspXI VCTCGAGB 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 1187
RsaI GTAC 4 cut(s) 155, 313, 702, 1185
RsaNI GTAC 4 cut(s) 154, 312, 701, 1184
RseI CAYNNNNRTG 4 cut(s) 70, 191, 539, 1387
SaqAI TTAA 5 cut(s) 177, 276, 456, 474, 710
SatI GCNGC 3 cut(s) 25, 131, 532
Sau3AI GATC 3 cut(s) 172, 558, 578
Sau96I GGNCC 2 cut(s) 1394, 1502
SchI GAGTC 1 cut(s) 1189
ScrFI CCNGG 4 cut(s) 741, 994, 1245, 1274
SduI GDGCHC 2 cut(s) 1125, 1543
SfcI CTRYAG 1 cut(s) 1042
Sfr274I CTCGAG 1 cut(s) 437
SinI GGWCC 2 cut(s) 1394, 1502
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 4 cut(s) 70, 191, 539, 1387
SmlI CTYRAG 3 cut(s) 176, 437, 709
SmoI CTYRAG 3 cut(s) 176, 437, 709
SnaBI TACGTA 1 cut(s) 1463
SsiI CCGC 2 cut(s) 157, 245
SspI AATATT 2 cut(s) 678, 1269
SspMI CTAG 3 cut(s) 113, 396, 636
StyD4I CCNGG 4 cut(s) 739, 992, 1243, 1272
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 6 cut(s) 122, 425, 921, 1204, 1296, 1563
TaiI ACGT 2 cut(s) 963, 1465
TaqI TCGA 6 cut(s) 38, 438, 492, 569, 916, 1198
TatI WGTACW 1 cut(s) 700
TfiI GAWTC 4 cut(s) 337, 896, 1033, 1522
Tru1I TTAA 5 cut(s) 177, 276, 456, 474, 710
Tru9I TTAA 5 cut(s) 177, 276, 456, 474, 710
TscAI CASTG 1 cut(s) 541
TseFI GTSAC 2 cut(s) 325, 1141
TseI GCWGC 3 cut(s) 24, 130, 531
Tsp45I GTSAC 2 cut(s) 325, 1141
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 1535
Vha464I CTTAAG 2 cut(s) 176, 709
VneI GTGCAC 1 cut(s) 1539
VpaK11BI GGWCC 2 cut(s) 1394, 1502
XapI RAATTY 5 cut(s) 292, 912, 1228, 1316, 1344
XhoI CTCGAG 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 3 cut(s) 113, 396, 636
Zsp2I ATGCAT 1 cut(s) 1409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.