Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000524.1

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Forward (+)

92504 .. 95173

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000524.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2670 bp

atgattagaaaaccgacggccacgatcaccccattcaagcaccaactcttgttcttcttctcctcctcctcctctccaccaccgccggacaacctcccttcccagctcttcgccatcctctcccgcccaaactggcaaaaacacccctccctcaaagcccttatcccctccatatccccctcccacgtctcctccctcttctccctcaacccggtccacccccgaaccgccctccacttcttcacctggctcgcccacaaccccaaattccaccacaacgtccactcccactcctccctcctcgccctcctcctccgcaacggcttctccggccccgccgagagggtccgcatttcgatgattaaggcttcaatttctaacgccgacgcccggttcgtgctggaccggttgcgccggttcaagcacgaattcgggttcaagatcactctcaggtgttatgattctcttttattttcaatttccaagtttttagggattgaagatttgaaaatgttgtatttggaaatgttggaggataaaatctcccctgatttgcatatatataatatcatggtgaatgcttattgtagattaggcaatgtagttgaggctggtgtctatgttagtaagatcgttgaggcgggtttgaagccgaatacgaatacttacaattctttgataatggggcattgtaggaataaggatgtggatagtgcttacaggacttttaaggtgatccccaacaagggttgtgcaagagatgtggtttcgtataatgtattgatacacgggctctgtgaggctggcaggagtaacgaggcgtttgagttgtactctaatatggagaaggatgagtgtttaccagatgcgccgacgtataatgttcttattcatgcattgtgtagaggggggaggagattggaagggatgagtttgtttaaggagatgaaagagaagggttgtgagcctagtgtaaatacttataatgtgctcattactagcctgtgtgacgaaaataagcttcaatatgctaggaaggttctagacctgatgtcggggaaagggttggttccggatgttgtcacgtacaatgcattgattgatgggtattgcaaggagggagcggttgaggctgcgtttgggattctgggtttgatggaatctactaagtgtcgtccaaatgctcgcacgtttactgaattgattcatggcttttgtaaaaggaataatgtgcaccaggcaatggcgcttcttgataggatgcttgaacggaagctctcaccagaccagattacatataattcgttgatcaatgggcagtgtaaagcaggtcatgtagatagtgcttataggttgcttagtttgatgaaacatagtgatttagttcctgaccggtggacttacagtgtcatcatcgacagtctctgtaagttggggagattaaaagaagctcaagccctctttgattctctcaaggacaaaggcatcaaatctaatgaagtgatatttacggctttacttgatggtcactgcaagattgggaaaatcgatgatgcttgcactttatttaacagaatgcttgctgagggttgtttcccaaactcgtatacttactgtgccttcctaggtgggctgtgcaaagagggaaaaacaaaggaagcattatcagtggtggaacagatgctaagtagtggtgtgaagcctacagtccacacttgtaacgttctaattaaccatgtgctgaaagaaggggatttcaaccatgctcagaggtttttgaatgaatttgtttctcttggttaccgacctgatgcagttatgtacggtacatttgttcatgcatattgcagcatagataatataaaagaagcagagaaggtaatgactaagatggatgaagaaggaatttctgcagattcattgacatatgcatttttaatcgaggcatatcttcgtttgggattaatagattctgcatttgatgtctttaagcgcatgtttgatgctcattgcaacccttgtcatcgcatctattacttgctcatcaaacacctgtcaaatgaaaagttgctgcagaccgacaataatgtagtaggacttcatatggtttcaagtgtcccatcagctgatatgtggaagacagtcgattttgaaattgctttagagctccttgagaagatgaatgaacatggttgtgcaccgaatgtgaaaacttacggtgagcttatagtagcactttgcaaagttaggaacttggaagtagcccgtaagttgtatgctcatatgagagataccagcatttctcctagtgaggatatttgtaactctcttcttaaatgttgctgcgagttgaaggtgtatggagaagcagctattctggtggacgctatgattcagcttggttatttaccagcattggagtcgtgcaaattgcttgtatgtggactttttgaagaagagaatagtgagaaggcaaattctgttttctgcagaattctttgttgcgcgtataactacgatgaagtagcctggaaagttcttcttgaaggtttacttacgaggggtcatatcaatagatgctctgagatggtaaccgtcatcgaaaatatgggttacaagcttcatcctgagacctattcaatgttaattgagggatttgatggaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

889

Amino Acids

100.03

Weight (kDa)

7.15

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	984
Acc36I	ACCTGC	1 cut(s)	1319
AccB7I	CCANNNNNTGG	1 cut(s)	1243
AccBSI	CCGCTC	1 cut(s)	1124
AccI	GTMKAC	1 cut(s)	1607
AccII	CGCG	1 cut(s)	2507
AccIII	TCCGGA	1 cut(s)	1072
AciI	CCGC	8 cut(s)	83, 124, 228, 316, 336, 349, 641, 1124
AclI	AACGTT	1 cut(s)	1722
AclWI	GGATC	1 cut(s)	730
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	6 cut(s)	266, 428, 1784, 1905, 2476, 2493
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	4 cut(s)	833, 1088, 1823, 1828
AfiI	CCNNNNNNNGG	7 cut(s)	211, 342, 390, 745, 746, 1054, 1243
AgeI	ACCGGT	2 cut(s)	405, 1392
AhdI	GACNNNNNGTC	1 cut(s)	1051
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	245, 1236, 2528
Alw21I	GWGCWC	4 cut(s)	993, 1236, 2169, 2200
Alw26I	GTCTC	3 cut(s)	193, 1427, 2624
Alw44I	GTGCAC	2 cut(s)	1232, 2196
AlwI	GGATC	1 cut(s)	730
AlwNI	CAGNNNCTG	1 cut(s)	1425
Aor13HI	TCCGGA	1 cut(s)	1072
AoxI	GGCC	2 cut(s)	18, 331
ApaLI	GTGCAC	2 cut(s)	1232, 2196
ApeKI	GCWGC	5 cut(s)	1133, 1848, 2071, 2343, 2369
ApoI	RAATTY	6 cut(s)	266, 428, 1784, 1905, 2476, 2493
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AseI	ATTAAT	1 cut(s)	1964
AsiGI	ACCGGT	2 cut(s)	405, 1392
Asp700I	GAANNNNTTC	1 cut(s)	1203
AspA2I	CCTAGG	1 cut(s)	1624
AspLEI	GCGC	5 cut(s)	414, 871, 1249, 1995, 2507
AspS9I	GGNCC	4 cut(s)	214, 332, 346, 403
AsuC2I	CCSGG	2 cut(s)	212, 391
AsuHPI	GGTGA	6 cut(s)	19, 235, 586, 745, 1272, 2231
AvaII	GGWCC	3 cut(s)	214, 346, 403
AvrII	CCTAGG	1 cut(s)	1624
BaeGI	GKGCMC	2 cut(s)	1236, 2200
BaeI	ACNNNNGTAYC	2 cut(s)	1818, 1851
BanII	GRGCYC	2 cut(s)	795, 2169
BarI	GAAGNNNNNNTAC	2 cut(s)	2082, 2114
BbsI	GAAGAC	1 cut(s)	2144
Bbv12I	GWGCWC	4 cut(s)	993, 1236, 2169, 2200
BbvCI	CCTCAGC	1 cut(s)	1584
BbvI	GCAGC	5 cut(s)	1120, 1860, 2058, 2330, 2381
BccI	CCATC	8 cut(s)	122, 1097, 1150, 1517, 1885, 2128, 2581, 2654
BceAI	ACGGC	3 cut(s)	33, 337, 1527
BcgI	CGANNNNNNTGC	2 cut(s)	2403, 2437
BciT130I	CCWGG	3 cut(s)	247, 1238, 2530
BclI	TGATCA	1 cut(s)	1308
BcnI	CCSGG	2 cut(s)	212, 391
BcoDI	GTCTC	3 cut(s)	193, 1427, 2624
BfaI	CTAG	6 cut(s)	969, 999, 1032, 1043, 1625, 2307
BfmI	CTRYAG	4 cut(s)	1704, 1911, 2072, 2488
BfoI	RGCGCY	1 cut(s)	1250
BfuAI	ACCTGC	1 cut(s)	1319
BisI	GCNGC	5 cut(s)	1134, 1849, 2072, 2344, 2370
BlnI	CCTAGG	1 cut(s)	1624
BlsI	GCNGC	5 cut(s)	1135, 1850, 2073, 2345, 2371
Bme1390I	CCNGG	5 cut(s)	212, 247, 391, 1238, 2530
Bme18I	GGWCC	3 cut(s)	214, 346, 403
BmeRI	GACNNNNNGTC	1 cut(s)	1051
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	4 cut(s)	214, 332, 346, 403
BmiI	GGNNCC	3 cut(s)	334, 347, 1071
BmrFI	CCNGG	5 cut(s)	212, 247, 391, 1238, 2530
BmsI	GCATC	9 cut(s)	856, 1251, 1494, 1543, 1671, 1801, 1993, 2037, 2567
BpiI	GAAGAC	1 cut(s)	2144
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
Bpu10I	CCTNAGC	1 cut(s)	1584
BpuEI	CTTGAG	3 cut(s)	1437, 1457, 2192
BpuMI	CCSGG	2 cut(s)	212, 391
Bsa29I	ATCGAT	1 cut(s)	1548
BsaAI	YACGTR	1 cut(s)	1086
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	2624
BsaJI	CCNNGG	1 cut(s)	1624
BsaWI	WCCGGW	3 cut(s)	405, 1072, 1392
BsaXI	ACNNNNNCTCC	8 cut(s)	176, 206, 269, 275, 299, 305, 311, 341
Bsc4I	CCNNNNNNNGG	7 cut(s)	211, 342, 390, 745, 746, 1054, 1243
Bse118I	RCCGGY	3 cut(s)	405, 414, 1392
Bse1I	ACTGG	1 cut(s)	137
Bse3DI	GCAATG	3 cut(s)	604, 1248, 2008
BseAI	TCCGGA	1 cut(s)	1072
BseBI	CCWGG	3 cut(s)	247, 1238, 2530
BseCI	ATCGAT	1 cut(s)	1548
BseDI	CCNNGG	1 cut(s)	1624
BseGI	GGATG	8 cut(s)	114, 709, 856, 933, 1081, 1266, 1900, 2623
BseLI	CCNNNNNNNGG	7 cut(s)	211, 342, 390, 745, 746, 1054, 1243
BseMI	GCAATG	3 cut(s)	604, 1248, 2008
BseMII	CTCAG	5 cut(s)	463, 1575, 1781, 2574, 2619
BseNI	ACTGG	1 cut(s)	137
BseSI	GKGCMC	2 cut(s)	1236, 2200
BseXI	GCAGC	5 cut(s)	1120, 1860, 2058, 2330, 2381
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	2507
BshFI	GGCC	2 cut(s)	20, 333
BshTI	ACCGGT	2 cut(s)	405, 1392
BshVI	ATCGAT	1 cut(s)	1548
BsiHKAI	GWGCWC	4 cut(s)	993, 1236, 2169, 2200
BsiSI	CCGG	8 cut(s)	86, 212, 330, 391, 406, 415, 1073, 1393
BslFI	GGGAC	1 cut(s)	2102
BslI	CCNNNNNNNGG	7 cut(s)	211, 342, 390, 745, 746, 1054, 1243
BsmAI	GTCTC	3 cut(s)	193, 1427, 2624
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	2102
BsmI	GAATGC	2 cut(s)	583, 1581
BsnI	GGCC	2 cut(s)	20, 333
Bso31I	GGTCTC	1 cut(s)	2624
Bsp1286I	GDGCHC	5 cut(s)	795, 993, 1236, 2169, 2200
Bsp13I	TCCGGA	1 cut(s)	1072
Bsp143I	GATC	5 cut(s)	24, 441, 630, 735, 1308
BspACI	CCGC	8 cut(s)	83, 124, 228, 316, 336, 349, 641, 1124
BspANI	GGCC	2 cut(s)	20, 333
BspCNI	CTCAG	5 cut(s)	462, 1576, 1780, 2575, 2620
BspDI	ATCGAT	1 cut(s)	1548
BspEI	TCCGGA	1 cut(s)	1072
BspFNI	CGCG	1 cut(s)	2507
BspLI	GGNNCC	3 cut(s)	334, 347, 1071
BspMAI	CTGCAG	3 cut(s)	1915, 2076, 2492
BspMI	ACCTGC	1 cut(s)	1319
BspPI	GGATC	1 cut(s)	730
BspQI	GCTCTTC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	2624
BsrBI	CCGCTC	1 cut(s)	1124
BsrDI	GCAATG	3 cut(s)	604, 1248, 2008
BsrFI	RCCGGY	3 cut(s)	405, 414, 1392
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	3 cut(s)	405, 414, 1392
BssECI	CCNNGG	1 cut(s)	1624
BssMI	GATC	5 cut(s)	24, 441, 630, 735, 1308
BssNAI	GTATAC	1 cut(s)	1608
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	1624
Bst1107I	GTATAC	1 cut(s)	1608
Bst2UI	CCWGG	3 cut(s)	247, 1238, 2530
Bst4CI	ACNGT	8 cut(s)	1406, 1421, 1616, 1708, 1826, 2143, 2219, 2596
Bst6I	CTCTTC	4 cut(s)	113, 203, 2334, 2451
BstACI	GRCGYC	1 cut(s)	387
BstBAI	YACGTR	1 cut(s)	1086
BstC8I	GCNNGC	5 cut(s)	252, 805, 1186, 1558, 1581
BstDEI	CTNAG	9 cut(s)	449, 1167, 1358, 1584, 1685, 1767, 1887, 2583, 2628
BstEII	GGTNACC	2 cut(s)	1799, 2590
BstF5I	GGATG	8 cut(s)	114, 709, 856, 933, 1081, 1266, 1900, 2623
BstFNI	CGCG	1 cut(s)	2507
BstH2I	RGCGCY	1 cut(s)	1250
BstHHI	GCGC	5 cut(s)	414, 871, 1249, 1995, 2507
BstKTI	GATC	5 cut(s)	27, 444, 633, 738, 1311
BstMAI	GTCTC	3 cut(s)	193, 1427, 2624
BstMBI	GATC	5 cut(s)	24, 441, 630, 735, 1308
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 1130
BstNI	CCWGG	3 cut(s)	247, 1238, 2530
BstNSI	RCATGY	1 cut(s)	1999
BstPI	GGTNACC	2 cut(s)	1799, 2590
BstSCI	CCNGG	5 cut(s)	210, 245, 389, 1236, 2528
BstSFI	CTRYAG	4 cut(s)	1704, 1911, 2072, 2488
BstSLI	GKGCMC	2 cut(s)	1236, 2200
BstUI	CGCG	1 cut(s)	2507
BstV1I	GCAGC	5 cut(s)	1120, 1860, 2058, 2330, 2381
BstV2I	GAAGAC	1 cut(s)	2144
BstZ17I	GTATAC	1 cut(s)	1608
Bsu15I	ATCGAT	1 cut(s)	1548
BsuRI	GGCC	2 cut(s)	20, 333
BsuTUI	ATCGAT	1 cut(s)	1548
BtgZI	GCGATG	1 cut(s)	2009
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	8 cut(s)	114, 709, 856, 933, 1081, 1266, 1900, 2623
BtsI	GCAGTG	2 cut(s)	1325, 1528
BtsIMutI	CAGTG	4 cut(s)	1325, 1411, 1528, 1674
BveI	ACCTGC	1 cut(s)	1319
Cac8I	GCNNGC	5 cut(s)	252, 805, 1186, 1558, 1581
CaiI	CAGNNNCTG	1 cut(s)	1425
CfoI	GCGC	5 cut(s)	414, 871, 1249, 1995, 2507
Cfr10I	RCCGGY	3 cut(s)	405, 414, 1392
Cfr13I	GGNCC	4 cut(s)	214, 332, 346, 403
ClaI	ATCGAT	1 cut(s)	1548
CseI	GACGC	2 cut(s)	395, 2393
Csp6I	GTAC	4 cut(s)	832, 1087, 1822, 1827
CspAI	ACCGGT	2 cut(s)	405, 1392
CspCI	CAANNNNNGTGG	2 cut(s)	744, 779
CviAII	CATG	9 cut(s)	571, 893, 1208, 1334, 1736, 1763, 1838, 1996, 2189
CviQI	GTAC	4 cut(s)	832, 1087, 1822, 1827
DdeI	CTNAG	9 cut(s)	449, 1167, 1358, 1584, 1685, 1767, 1887, 2583, 2628
DpnI	GATC	5 cut(s)	26, 443, 632, 737, 1310
DpnII	GATC	5 cut(s)	24, 441, 630, 735, 1308
DriI	GACNNNNNGTC	1 cut(s)	1051
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	4 cut(s)	113, 203, 2334, 2451
Eam1105I	GACNNNNNGTC	1 cut(s)	1051
EarI	CTCTTC	4 cut(s)	113, 203, 2334, 2451
Ecl136II	GAGCTC	1 cut(s)	2167
Eco130I	CCWWGG	1 cut(s)	1624
Eco24I	GRGCYC	2 cut(s)	795, 2169
Eco31I	GGTCTC	1 cut(s)	2624
Eco47I	GGWCC	3 cut(s)	214, 346, 403
Eco53kI	GAGCTC	1 cut(s)	2167
Eco91I	GGTNACC	2 cut(s)	1799, 2590
EcoICRI	GAGCTC	1 cut(s)	2167
EcoO65I	GGTNACC	2 cut(s)	1799, 2590
EcoRI	GAATTC	2 cut(s)	428, 2493
EcoRII	CCWGG	3 cut(s)	245, 1236, 2528
EcoT14I	CCWWGG	1 cut(s)	1624
EcoT22I	ATGCAT	4 cut(s)	898, 1096, 1843, 1933
EcoT38I	GRGCYC	2 cut(s)	795, 2169
ErhI	CCWWGG	1 cut(s)	1624
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	9 cut(s)	574, 896, 1211, 1337, 1739, 1766, 1841, 1999, 2192
FalI	AAGNNNNNCTT	4 cut(s)	2526, 2558, 2538, 2570
FaqI	GGGAC	1 cut(s)	2102
FatI	CATG	9 cut(s)	570, 892, 1207, 1333, 1735, 1762, 1837, 1995, 2188
FauI	CCCGC	3 cut(s)	131, 343, 634
FauNDI	CATATG	3 cut(s)	1927, 2103, 2283
FbaI	TGATCA	1 cut(s)	1308
FblI	GTMKAC	1 cut(s)	1607
Fnu4HI	GCNGC	5 cut(s)	1134, 1849, 2072, 2344, 2370
FokI	GGATG	8 cut(s)	101, 716, 863, 940, 1088, 1273, 1907, 2610
FriOI	GRGCYC	2 cut(s)	795, 2169
Fsp4HI	GCNGC	5 cut(s)	1134, 1849, 2072, 2344, 2370
FspBI	CTAG	6 cut(s)	969, 999, 1032, 1043, 1625, 2307
GlaI	GCGC	5 cut(s)	413, 870, 1248, 1994, 2506
GluI	GCNGC	5 cut(s)	1134, 1849, 2072, 2344, 2370
GsaI	CCCAGC	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	1250
HaeIII	GGCC	2 cut(s)	20, 333
HapII	CCGG	8 cut(s)	86, 212, 330, 391, 406, 415, 1073, 1393
HgaI	GACGC	2 cut(s)	395, 2393
HhaI	GCGC	5 cut(s)	414, 871, 1249, 1995, 2507
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	9 cut(s)	574, 896, 1211, 1337, 1739, 1766, 1841, 1999, 2192
Hin6I	GCGC	5 cut(s)	412, 869, 1247, 1993, 2505
HinP1I	GCGC	5 cut(s)	412, 869, 1247, 1993, 2505
HindIII	AAGCTT	2 cut(s)	1019, 2618
HinfI	GANTC	9 cut(s)	461, 1144, 1160, 1204, 1466, 1916, 1970, 2392, 2420
HpaII	CCGG	8 cut(s)	86, 212, 330, 391, 406, 415, 1073, 1393
HphI	GGTGA	6 cut(s)	19, 235, 586, 745, 1272, 2231
Hpy188I	TCNGA	2 cut(s)	1770, 2584
Hpy188III	TCNNGA	7 cut(s)	439, 1043, 1073, 1253, 1388, 2543, 2627
Hpy99I	CGWCG	3 cut(s)	19, 389, 877
HpyCH4III	ACNGT	8 cut(s)	1406, 1421, 1616, 1708, 1826, 2143, 2219, 2596
HpyCH4IV	ACGT	6 cut(s)	186, 279, 875, 1085, 1190, 1722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 1130
HpyF3I	CTNAG	9 cut(s)	449, 1167, 1358, 1584, 1685, 1767, 1887, 2583, 2628
HpySE526I	ACGT	6 cut(s)	186, 279, 875, 1085, 1190, 1722
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	9 cut(s)	574, 896, 1211, 1337, 1739, 1766, 1841, 1999, 2192
HspAI	GCGC	5 cut(s)	412, 869, 1247, 1993, 2505
Kpn2I	TCCGGA	1 cut(s)	1072
Ksp22I	TGATCA	1 cut(s)	1308
Kzo9I	GATC	5 cut(s)	24, 441, 630, 735, 1308
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	2 cut(s)	1121, 2172
Lsp1109I	GCAGC	5 cut(s)	1120, 1860, 2058, 2330, 2381
LweI	GCATC	9 cut(s)	856, 1251, 1494, 1543, 1671, 1801, 1993, 2037, 2567
MaeI	CTAG	6 cut(s)	969, 999, 1032, 1043, 1625, 2307
MaeII	ACGT	6 cut(s)	186, 279, 875, 1085, 1190, 1722
MaeIII	GTNAC	9 cut(s)	812, 1007, 1081, 1526, 1718, 1799, 2321, 2590, 2612
MalI	GATC	5 cut(s)	26, 443, 632, 737, 1310
MbiI	CCGCTC	1 cut(s)	1124
MboI	GATC	5 cut(s)	24, 441, 630, 735, 1308
MhlI	GDGCHC	5 cut(s)	795, 993, 1236, 2169, 2200
MlyI	GAGTC	1 cut(s)	2429
MmeI	TCCRAC	1 cut(s)	510
Mph1103I	ATGCAT	4 cut(s)	898, 1096, 1843, 1933
MroI	TCCGGA	1 cut(s)	1072
MroXI	GAANNNNTTC	1 cut(s)	1203
MslI	CAYNNNNRTG	2 cut(s)	356, 2193
MspA1I	CMGCKG	1 cut(s)	2126
MspI	CCGG	8 cut(s)	86, 212, 330, 391, 406, 415, 1073, 1393
MspR9I	CCNGG	5 cut(s)	212, 247, 391, 1238, 2530
Mva1269I	GAATGC	2 cut(s)	583, 1581
MvaI	CCWGG	3 cut(s)	247, 1238, 2530
MvnI	CGCG	1 cut(s)	2507
MwoI	GCNNNNNNNGC	2 cut(s)	330, 1130
NciI	CCSGG	2 cut(s)	212, 391
NdeI	CATATG	3 cut(s)	1927, 2103, 2283
NdeII	GATC	5 cut(s)	24, 441, 630, 735, 1308
NlaIII	CATG	9 cut(s)	574, 896, 1211, 1337, 1739, 1766, 1841, 1999, 2192
NlaIV	GGNNCC	3 cut(s)	334, 347, 1071
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	3 cut(s)	1007, 1081, 1526
NsiI	ATGCAT	4 cut(s)	898, 1096, 1843, 1933
NspI	RCATGY	1 cut(s)	1999
PciSI	GCTCTTC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	2 cut(s)	583, 1581
PdmI	GAANNNNTTC	1 cut(s)	1203
PfeI	GAWTC	8 cut(s)	461, 1144, 1160, 1204, 1466, 1916, 1970, 2392
PflMI	CCANNNNNTGG	1 cut(s)	1243
PinAI	ACCGGT	2 cut(s)	405, 1392
PkrI	GCNGC	5 cut(s)	1135, 1850, 2073, 2345, 2371
PleI	GAGTC	1 cut(s)	2428
PpsI	GAGTC	1 cut(s)	2428
Ppu21I	YACGTR	1 cut(s)	1086
PshBI	ATTAAT	1 cut(s)	1964
PsiI	TTATAA	1 cut(s)	984
Psp124BI	GAGCTC	1 cut(s)	2169
Psp1406I	AACGTT	1 cut(s)	1722
Psp6I	CCWGG	3 cut(s)	245, 1236, 2528
PspEI	GGTNACC	2 cut(s)	1799, 2590
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	3 cut(s)	245, 1236, 2528
PspN4I	GGNNCC	3 cut(s)	334, 347, 1071
PspPI	GGNCC	4 cut(s)	214, 332, 346, 403
PstI	CTGCAG	3 cut(s)	1915, 2076, 2492
PstNI	CAGNNNCTG	1 cut(s)	1425
PvuII	CAGCTG	1 cut(s)	2126
RsaI	GTAC	4 cut(s)	833, 1088, 1823, 1828
RsaNI	GTAC	4 cut(s)	832, 1087, 1822, 1827
RseI	CAYNNNNRTG	2 cut(s)	356, 2193
SacI	GAGCTC	1 cut(s)	2169
SapI	GCTCTTC	1 cut(s)	113
SatI	GCNGC	5 cut(s)	1134, 1849, 2072, 2344, 2370
Sau3AI	GATC	5 cut(s)	24, 441, 630, 735, 1308
Sau96I	GGNCC	4 cut(s)	214, 332, 346, 403
SchI	GAGTC	1 cut(s)	2429
ScrFI	CCNGG	5 cut(s)	212, 247, 391, 1238, 2530
SduI	GDGCHC	5 cut(s)	795, 993, 1236, 2169, 2200
SfaNI	GCATC	9 cut(s)	856, 1251, 1494, 1543, 1671, 1801, 1993, 2037, 2567
SfcI	CTRYAG	4 cut(s)	1704, 1911, 2072, 2488
SinI	GGWCC	3 cut(s)	214, 346, 403
SmiMI	CAYNNNNRTG	2 cut(s)	356, 2193
SmlI	CTYRAG	3 cut(s)	1452, 1472, 2171
SmoI	CTYRAG	3 cut(s)	1452, 1472, 2171
SsiI	CCGC	8 cut(s)	83, 124, 228, 316, 336, 349, 641, 1124
SspMI	CTAG	6 cut(s)	969, 999, 1032, 1043, 1625, 2307
SstI	GAGCTC	1 cut(s)	2169
StyD4I	CCNGG	5 cut(s)	210, 245, 389, 1236, 2528
StyI	CCWWGG	1 cut(s)	1624
TaaI	ACNGT	8 cut(s)	1406, 1421, 1616, 1708, 1826, 2143, 2219, 2596
TaiI	ACGT	6 cut(s)	189, 282, 878, 1088, 1193, 1725
TaqI	TCGA	6 cut(s)	356, 1416, 1548, 1941, 2145, 2601
TaqII	GACCGA	1 cut(s)	2093
TatI	WGTACW	1 cut(s)	831
TfiI	GAWTC	8 cut(s)	461, 1144, 1160, 1204, 1466, 1916, 1970, 2392
TscAI	CASTG	4 cut(s)	1325, 1411, 1535, 1674
TseFI	GTSAC	3 cut(s)	1007, 1081, 1526
TseI	GCWGC	5 cut(s)	1133, 1848, 2071, 2343, 2369
Tsp45I	GTSAC	3 cut(s)	1007, 1081, 1526
TspGWI	ACGGA	1 cut(s)	1285
TspRI	CASTG	4 cut(s)	1325, 1411, 1535, 1674
Van91I	CCANNNNNTGG	1 cut(s)	1243
VneI	GTGCAC	2 cut(s)	1232, 2196
VpaK11BI	GGWCC	3 cut(s)	214, 346, 403
VspI	ATTAAT	1 cut(s)	1964
XapI	RAATTY	6 cut(s)	266, 428, 1784, 1905, 2476, 2493
XbaI	TCTAGA	1 cut(s)	1042
XceI	RCATGY	1 cut(s)	1999
XmaJI	CCTAGG	1 cut(s)	1624
XmiI	GTMKAC	1 cut(s)	1607
XmnI	GAANNNNTTC	1 cut(s)	1203
XspI	CTAG	6 cut(s)	969, 999, 1032, 1043, 1625, 2307
Zsp2I	ATGCAT	4 cut(s)	898, 1096, 1843, 1933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.