Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Forward (+)

50605735 .. 50610083

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2481 bp

ATGTCTCCTCCCTCTTCTCCCTCAACCACCACCTCCCCCCAAACCGCCCTCGCCTTCTTCAACTGGATCGCCCTCAAACCCAACTTCACCCACTCCGTCCACTCCCACTCATCTCTCCTCTCCCTTCTCCTCCCCAACCCTTCCTTCCTCTCCGTCGCCGAAAAGATCCGCATTTCCATGATCAAGTCCTCCACCTGCCCCCCGGACGCCCTCTTCGTCCTCCACCATCTCCGCAACTTGAACAAGACCCACTTCAAGCTCACCCTCAGGTCATACAACTTTCTTCTCATGTCATTGTCCAAGTTTTCGCTGTTTGATGATTTAAATACTGTGTATATGGAGATGTTGGAGGATAAGGTTTCGCCCAATTTGCATACATTCAACACTATGGTCAATGCTTATTGTAAATTGGGGAATTTGGCTGAGGCAGAGATGTATTTCAGTAAGATAGGGCAGGCCGGGTTGCGGCCCGATACTTTTAGCTACACGTCTTTGATACTGGGGCATTGTAGGAATAAGGATGTGGACAGTGCTTATAGGGTGTTTAGGGTAATGCCGCAGAAAGAGTGTCGGAGAAATGAGGTTTCGTATACGAATCTGATACATGGGTTGTGTGAGGCAGATCGGATTGGTGAGGCTTTTAAGATGTTTTTGCAGATGGGGGAGGATAATTGTCACCCGACTGTCCGCACGTTTACAGTTCTTATTTCTGCATTTTGTAGATTGGGGAAGAAGTCAGAAGCGATGAAGTTATTTAGAGAGATGAGGGAAAAGGGTTGTCAACCGAATGCTCATACTTATACCGTGCTCATTGATAGTATGTGCAAGGAGAATAAGCTAGGTGAGGCTAGGAAGTTGCTGAATGAGATGTTGGAGAAACGGTTGGTTCCTACTGTTGTCACATACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCAGTTGAGGCTGCAATTGATATTAAGGCTTTGATGGAATCAAATAAATGTTGTCCAAATGCTCGAACGTACAATGAATTAATTTTTGGGTTTTGTAAAAGGAAAGATGTAAACCAGGCGATGGCATTGCTCGCTAAGATGCTCGATCTGAAGCTCTCACCTAGTGTGATTACGTATAACTCATTAATACATGGCCACTGTAAAGCAGGTGATTTAGACTGTGCTTATAGATTGCTTGATTTGATGAAGGACAGTGGTTTGGTTCCTGACCAGTGGACCTATAGTGTTTTTATAGACAGTCTTTGTAAGAGTGGGAGACTAGAAGAAGCTCATGCCCTGTTTGATTCTCTTAAGGAGAAAGGCGTAAAGTCAAATGAAGTGACATTTACTGCTTTGATTGATGGTTACTGCAAGGTGGGGAAAATTAATGATGCCCATTCCTTGTTTGATAGGATGCTTACAGAGGGCTGTAACCCGAACACATGCACTTACAATACCTTGGTAGATGGATTGTGCAAAGAAGGAAAATTGCAGGATGCAATATTACTGGTGGAGAAGATGTTAAGTACGGGCCTGACGCATGCACCACATACTTATTCTATACTGATCAAACATATGCTGAAAGAAGGGGACTTCGGCCATGCTCATAGACTGTTCAACCAGATGGTTTGTTCTGGTAGTAAACCAGACGTATTTATTTACACTTCGTTTATTCATGCATATTGCAGCATAGGGGATATAGAAGAGGCAGAAAAGCTGATGGTTAAGATGAGTGAAGAAGGAATTAGAGCAGATTCGTTGACTTACACATTATTGATTAATACATATGGACGTATGGGACTACTAGATTCTGCATTTGGTGTTCTTAAGCGCATGTTTGATGCTTGCTGCGATCCTTCTCACTATACCTATTCTTTCCTGATCAAACATCTTTTGCGCTCGAAGACGAATGACGATATAGTGAGACTTGATTTGGCCTCAAGCTTCATTGATATTGCTGATGTATGGAAGACAATGGATTATCAAAATGCTTTAGATCTGTTTGACAAGATGGTTGAACATGGCTGTGCACCCAATCGCAACACATATGAAAAGCTTATAATAGGTCTTTGCAAAGAGGGGCGCTTGGAAGTAGCCCAGAGGCTATATGTTCATATGAGAGATAGGCGGATTTCTCCCAGCCAGGATATTTATCATTCTCTTATTAATTGTTGCTGTCAGTTGCAAGTGTATGGAGAGGCGGCAAACCTGCTGGATACGATGATTGAGGATGGTTATTTACCAACATTAGAGTCTTCCAAGTTGCTTGTATGTGGGCTATTCATTGAGGAGAATATCGAGAAGGCAAAAGCCGTTTTCTGTAGTTTGCTCCGTTGTGAGTATAACTTTGATGAAGTAGCTTGGAAAGTTCTCCATGATGGTTTACTTAAGAGAGGTCTTGTCAATAGATGCTCTGAGTTGATAACCATCATGGAGCAGATGGGTTGCAAGCTTCATCCTCAGACATATTCAATGCTGATTGAGGGAATTGATGGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

826

Amino Acids

93.41

Weight (kDa)

6.64

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	91 - 136	2.4e-07	PPR repeat family
PPR_1	PF12854	120 - 146	3.3e-07	PPR repeat
PPR_2	PF13041	122 - 171	2.4e-11	PPR repeat family
PPR_1	PF12854	154 - 185	2.6e-09	PPR repeat
PPR_2	PF13041	157 - 205	1.6e-13	PPR repeat family
PPR_1	PF12854	188 - 220	2.8e-07	PPR repeat
PPR_2	PF13041	193 - 241	1e-14	PPR repeat family
PPR_3	PF13812	219 - 273	1.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	224 - 256	1e-10	PPR repeat
PPR	PF01535	231 - 260	3e-09	PPR repeat
PPR_2	PF13041	231 - 276	3.6e-17	PPR repeat family
PPR_long	PF17177	247 - 336	1.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	250 - 309	1.2e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	258 - 290	1.5e-11	PPR repeat
PPR	PF01535	266 - 294	2.4e-06	PPR repeat
PPR_2	PF13041	268 - 305	1e-08	PPR repeat family
PPR_3	PF13812	285 - 341	2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	294 - 321	2.2e-09	PPR repeat
PPR_2	PF13041	297 - 346	6.9e-16	PPR repeat family
PPR	PF01535	300 - 330	6.8e-06	PPR repeat
PPR_long	PF17177	325 - 409	3.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	330 - 360	1e-08	PPR repeat
PPR_2	PF13041	336 - 380	4.5e-12	PPR repeat family
PPR_3	PF13812	356 - 412	6.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	365 - 396	2.7e-13	PPR repeat
PPR_2	PF13041	367 - 416	6.1e-17	PPR repeat family
PPR	PF01535	370 - 400	4.5e-08	PPR repeat
PPR_1	PF12854	399 - 429	2.2e-09	PPR repeat
PPR	PF01535	406 - 435	6.5e-07	PPR repeat
PPR_2	PF13041	410 - 451	1.4e-12	PPR repeat family
PPR_long	PF17177	420 - 524	3.6e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	423 - 534	5.4e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	426 - 481	6.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	433 - 465	3.2e-11	PPR repeat
PPR_2	PF13041	438 - 486	2e-18	PPR repeat family
PPR	PF01535	440 - 470	8.4e-09	PPR repeat
PPR_1	PF12854	469 - 500	9.3e-14	PPR repeat
PPR_2	PF13041	472 - 518	3.5e-11	PPR repeat family
PPR	PF01535	476 - 504	3.3e-06	PPR repeat
PPR_2	PF13041	511 - 549	7.3e-08	PPR repeat family
PPR_3	PF13812	530 - 591	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	539 - 571	4.5e-09	PPR repeat
PPR_2	PF13041	542 - 589	9.1e-13	PPR repeat family
PPR	PF01535	546 - 575	1.9e-06	PPR repeat
PPR_3	PF13812	566 - 622	6.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	581 - 624	1.3e-07	PPR repeat family
PPR_long	PF17177	648 - 781	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	653 - 685	5e-07	PPR repeat family
PPR_3	PF13812	660 - 718	4.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	668 - 700	2.1e-06	PPR repeat
PPR_2	PF13041	675 - 720	1.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2039
AarI	CACCTGC	2 cut(s)	203, 1136
Acc36I	ACCTGC	3 cut(s)	203, 1136, 2196
AccB7I	CCANNNNNTGG	1 cut(s)	1060
AccI	GTMKAC	1 cut(s)	590
AciI	CCGC	8 cut(s)	45, 169, 232, 466, 557, 688, 2107, 2180
AclWI	GGATC	3 cut(s)	74, 160, 1826
AcoI	YGGCCR	2 cut(s)	1132, 1576
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	1109
AcyI	GRCGYC	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	1103
AfaI	GTAC	2 cut(s)	1010, 1507
AfiI	CCNNNNNNNGG	2 cut(s)	465, 1060
AflII	CTTAAG	3 cut(s)	1289, 1805, 2366
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	7 cut(s)	61, 241, 256, 382, 1597, 1997, 2451
AjiI	CACGTC	1 cut(s)	489
AjnI	CCWGG	2 cut(s)	1053, 2121
AjuI	GAANNNNNNNTTGG	6 cut(s)	128, 160, 854, 886, 1008, 1040
Alw21I	GWGCWC	2 cut(s)	810, 2011
Alw26I	GTCTC	3 cut(s)	9, 1249, 1897
Alw44I	GTGCAC	1 cut(s)	2007
AlwI	GGATC	3 cut(s)	74, 160, 1826
AoxI	GGCC	6 cut(s)	456, 467, 1132, 1510, 1576, 1914
ApaLI	GTGCAC	1 cut(s)	2007
ApeKI	GCWGC	3 cut(s)	950, 1665, 1827
ApoI	RAATTY	1 cut(s)	415
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AseI	ATTAAT	5 cut(s)	1019, 1124, 1365, 1758, 2145
AspLEI	GCGC	3 cut(s)	1812, 1878, 2064
AspS9I	GGNCC	3 cut(s)	468, 1215, 1510
AsuC2I	CCSGG	2 cut(s)	203, 460
AsuHPI	GGTGA	7 cut(s)	79, 253, 644, 668, 854, 1089, 1160
AvaII	GGWCC	1 cut(s)	1215
AxyI	CCTNAGG	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	2011
BaeI	ACNNNNGTAYC	2 cut(s)	593, 626
BalI	TGGCCA	1 cut(s)	1134
BbsI	GAAGAC	3 cut(s)	1889, 1955, 2226
Bbv12I	GWGCWC	2 cut(s)	810, 2011
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	937, 1677, 1814
BceAI	ACGGC	1 cut(s)	2276
BcgI	CGANNNNNNTGC	2 cut(s)	1048, 1082
BciT130I	CCWGG	2 cut(s)	1055, 2123
BciVI	GTATCC	1 cut(s)	2188
BclI	TGATCA	3 cut(s)	180, 1545, 1860
BcnI	CCSGG	2 cut(s)	203, 460
BcoDI	GTCTC	3 cut(s)	9, 1249, 1897
BfaI	CTAG	5 cut(s)	839, 849, 1101, 1259, 1784
BfmI	CTRYAG	2 cut(s)	1219, 2299
BfoI	RGCGCY	1 cut(s)	2065
BfrI	CTTAAG	3 cut(s)	1289, 1805, 2366
BfuAI	ACCTGC	3 cut(s)	203, 1136, 2196
BfuI	GTATCC	1 cut(s)	2188
BglII	AGATCT	1 cut(s)	1975
BisI	GCNGC	6 cut(s)	467, 557, 951, 1666, 1828, 2181
BlsI	GCNGC	6 cut(s)	468, 558, 952, 1667, 1829, 2182
Bme1390I	CCNGG	4 cut(s)	203, 460, 1055, 2123
Bme18I	GGWCC	1 cut(s)	1215
BmgBI	CACGTC	1 cut(s)	489
BmgT120I	GGNCC	3 cut(s)	468, 1215, 1510
BmiI	GGNNCC	2 cut(s)	888, 1203
BmrFI	CCNGG	4 cut(s)	203, 460, 1055, 2123
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	6 cut(s)	1068, 1360, 1383, 1465, 1810, 2378
BmuI	ACTGGG	1 cut(s)	509
BpiI	GAAGAC	3 cut(s)	1889, 1955, 2226
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	1903
BpuMI	CCSGG	2 cut(s)	203, 460
BsaAI	YACGTR	1 cut(s)	1113
BsaBI	GATNNNNATC	2 cut(s)	2130, 2405
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	201, 1437
BsaXI	ACNNNNNCTCC	4 cut(s)	866, 896, 1484, 1514
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 1060
Bse1I	ACTGG	4 cut(s)	68, 504, 1210, 1491
Bse21I	CCTNAGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	1064
Bse8I	GATNNNNATC	2 cut(s)	2130, 2405
BseBI	CCWGG	2 cut(s)	1055, 2123
BseDI	CCNNGG	2 cut(s)	201, 1437
BseGI	GGATG	5 cut(s)	526, 1398, 1480, 2215, 2434
BseJI	GATNNNNATC	2 cut(s)	2130, 2405
BseLI	CCNNNNNNNGG	2 cut(s)	465, 1060
BseMI	GCAATG	1 cut(s)	1064
BseMII	CTCAG	4 cut(s)	280, 414, 2385, 2453
BseNI	ACTGG	4 cut(s)	68, 504, 1210, 1491
BseRI	GAGGAG	3 cut(s)	107, 119, 2282
BseSI	GKGCMC	1 cut(s)	2011
BseXI	GCAGC	3 cut(s)	937, 1677, 1814
BseYI	CCCAGC	1 cut(s)	2117
BshFI	GGCC	6 cut(s)	458, 469, 1134, 1512, 1578, 1916
BsiHKAI	GWGCWC	2 cut(s)	810, 2011
BsiSI	CCGG	2 cut(s)	203, 459
BslFI	GGGAC	2 cut(s)	1583, 1791
BslI	CCNNNNNNNGG	2 cut(s)	465, 1060
BsmAI	GTCTC	3 cut(s)	9, 1249, 1897
BsmFI	GGGAC	2 cut(s)	1583, 1791
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	6 cut(s)	458, 469, 1134, 1512, 1578, 1916
Bsp1286I	GDGCHC	2 cut(s)	810, 2011
Bsp143I	GATC	9 cut(s)	66, 165, 180, 622, 1084, 1545, 1831, 1860, 1975
BspACI	CCGC	8 cut(s)	45, 169, 232, 466, 557, 688, 2107, 2180
BspANI	GGCC	6 cut(s)	458, 469, 1134, 1512, 1578, 1916
BspCNI	CTCAG	4 cut(s)	279, 415, 2386, 2452
BspLI	GGNNCC	2 cut(s)	888, 1203
BspMI	ACCTGC	3 cut(s)	203, 1136, 2196
BspPI	GGATC	3 cut(s)	74, 160, 1826
BspTI	CTTAAG	3 cut(s)	1289, 1805, 2366
BsrDI	GCAATG	1 cut(s)	1064
BsrI	ACTGG	4 cut(s)	68, 504, 1210, 1491
BssECI	CCNNGG	2 cut(s)	201, 1437
BssMI	GATC	9 cut(s)	66, 165, 180, 622, 1084, 1545, 1831, 1860, 1975
BssNAI	GTATAC	1 cut(s)	591
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	1437
Bst1107I	GTATAC	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	1055, 2123
Bst6I	CTCTTC	3 cut(s)	19, 218, 1677
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	3 cut(s)	1289, 1805, 2366
BstBAI	YACGTR	1 cut(s)	1113
BstC8I	GCNNGC	5 cut(s)	456, 1071, 1521, 1825, 2429
BstDEI	CTNAG	5 cut(s)	266, 423, 1074, 2394, 2439
BstF5I	GGATG	5 cut(s)	526, 1398, 1480, 2215, 2434
BstH2I	RGCGCY	1 cut(s)	2065
BstHHI	GCGC	3 cut(s)	1812, 1878, 2064
BstKTI	GATC	9 cut(s)	69, 168, 183, 625, 1087, 1548, 1834, 1863, 1978
BstMAI	GTCTC	3 cut(s)	9, 1249, 1897
BstMBI	GATC	9 cut(s)	66, 165, 180, 622, 1084, 1545, 1831, 1860, 1975
BstMWI	GCNNNNNNNGC	3 cut(s)	370, 947, 1070
BstNI	CCWGG	2 cut(s)	1055, 2123
BstNSI	RCATGY	3 cut(s)	1425, 1523, 1816
BstSCI	CCNGG	4 cut(s)	201, 458, 1053, 2121
BstSFI	CTRYAG	2 cut(s)	1219, 2299
BstSLI	GKGCMC	1 cut(s)	2011
BstSNI	TACGTA	1 cut(s)	1113
BstV1I	GCAGC	3 cut(s)	937, 1677, 1814
BstV2I	GAAGAC	3 cut(s)	1889, 1955, 2226
BstX2I	RGATCY	2 cut(s)	165, 1975
BstYI	RGATCY	2 cut(s)	165, 1975
BstZ17I	GTATAC	1 cut(s)	591
Bsu36I	CCTNAGG	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	2188
BsuRI	GGCC	6 cut(s)	458, 469, 1134, 1512, 1578, 1916
BtgZI	GCGATG	2 cut(s)	758, 1073
BtrI	CACGTC	1 cut(s)	489
BtsCI	GGATG	5 cut(s)	526, 1398, 1480, 2215, 2434
BtsIMutI	CAGTG	4 cut(s)	535, 1135, 1198, 1217
BveI	ACCTGC	3 cut(s)	203, 1136, 2196
Cac8I	GCNNGC	5 cut(s)	456, 1071, 1521, 1825, 2429
CfoI	GCGC	3 cut(s)	1812, 1878, 2064
Cfr13I	GGNCC	3 cut(s)	468, 1215, 1510
CseI	GACGC	2 cut(s)	215, 1525
Csp6I	GTAC	2 cut(s)	1009, 1506
CviQI	GTAC	2 cut(s)	1009, 1506
DdeI	CTNAG	5 cut(s)	266, 423, 1074, 2394, 2439
DpnI	GATC	9 cut(s)	68, 167, 182, 624, 1086, 1547, 1833, 1862, 1977
DpnII	GATC	9 cut(s)	66, 165, 180, 622, 1084, 1545, 1831, 1860, 1975
DraI	TTTAAA	1 cut(s)	324
DraIII	CACNNNGTG	1 cut(s)	1103
EaeI	YGGCCR	2 cut(s)	1132, 1576
Eam1104I	CTCTTC	3 cut(s)	19, 218, 1677
EarI	CTCTTC	3 cut(s)	19, 218, 1677
EciI	GGCGGA	1 cut(s)	2122
Eco105I	TACGTA	1 cut(s)	1113
Eco130I	CCWWGG	1 cut(s)	1437
Eco47I	GGWCC	1 cut(s)	1215
Eco57I	CTGAAG	1 cut(s)	1109
Eco81I	CCTNAGG	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	1053, 2121
EcoT14I	CCWWGG	1 cut(s)	1437
EcoT22I	ATGCAT	2 cut(s)	913, 1660
ErhI	CCWWGG	1 cut(s)	1437
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	2 cut(s)	1583, 1791
FauNDI	CATATG	4 cut(s)	1554, 1765, 2026, 2094
FbaI	TGATCA	3 cut(s)	180, 1545, 1860
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	6 cut(s)	467, 557, 951, 1666, 1828, 2181
FokI	GGATG	5 cut(s)	533, 1405, 1487, 2222, 2421
Fsp4HI	GCNGC	6 cut(s)	467, 557, 951, 1666, 1828, 2181
FspBI	CTAG	5 cut(s)	839, 849, 1101, 1259, 1784
GlaI	GCGC	3 cut(s)	1811, 1877, 2063
GluI	GCNGC	6 cut(s)	467, 557, 951, 1666, 1828, 2181
GsaI	CCCAGC	1 cut(s)	2121
HaeII	RGCGCY	1 cut(s)	2065
HaeIII	GGCC	6 cut(s)	458, 469, 1134, 1512, 1578, 1916
HapII	CCGG	2 cut(s)	203, 459
HgaI	GACGC	2 cut(s)	215, 1525
HhaI	GCGC	3 cut(s)	1812, 1878, 2064
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	3 cut(s)	1810, 1876, 2062
HinP1I	GCGC	3 cut(s)	1810, 1876, 2062
HincII	GTYRAC	2 cut(s)	782, 1740
HindII	GTYRAC	2 cut(s)	782, 1740
HindIII	AAGCTT	3 cut(s)	1921, 2033, 2429
HinfI	GANTC	6 cut(s)	595, 977, 1283, 1733, 1787, 2231
HpaII	CCGG	2 cut(s)	203, 459
HphI	GGTGA	7 cut(s)	79, 253, 644, 668, 854, 1089, 1160
Hpy188I	TCNGA	7 cut(s)	573, 600, 627, 739, 1089, 2395, 2442
Hpy188III	TCNNGA	3 cut(s)	1205, 1858, 2278
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4IV	ACGT	6 cut(s)	488, 692, 1007, 1112, 1629, 1771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	370, 947, 1070
HpyF3I	CTNAG	5 cut(s)	266, 423, 1074, 2394, 2439
HpySE526I	ACGT	6 cut(s)	488, 692, 1007, 1112, 1629, 1771
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	3 cut(s)	1810, 1876, 2062
Ksp22I	TGATCA	3 cut(s)	180, 1545, 1860
Kzo9I	GATC	9 cut(s)	66, 165, 180, 622, 1084, 1545, 1831, 1860, 1975
LmnI	GCTCC	3 cut(s)	938, 2313, 2413
Lsp1109I	GCAGC	3 cut(s)	937, 1677, 1814
LweI	GCATC	6 cut(s)	1068, 1360, 1383, 1465, 1810, 2378
MaeI	CTAG	5 cut(s)	839, 849, 1101, 1259, 1784
MaeII	ACGT	6 cut(s)	488, 692, 1007, 1112, 1629, 1771
MaeIII	GTNAC	5 cut(s)	674, 898, 1318, 1343, 1409
MalI	GATC	9 cut(s)	68, 167, 182, 624, 1086, 1547, 1833, 1862, 1977
MboI	GATC	9 cut(s)	66, 165, 180, 622, 1084, 1545, 1831, 1860, 1975
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	2 cut(s)	165, 1975
MhlI	GDGCHC	2 cut(s)	810, 2011
MlsI	TGGCCA	1 cut(s)	1134
MluNI	TGGCCA	1 cut(s)	1134
MlyI	GAGTC	1 cut(s)	2240
MmeI	TCCRAC	3 cut(s)	327, 551, 852
Mox20I	TGGCCA	1 cut(s)	1134
Mph1103I	ATGCAT	2 cut(s)	913, 1660
MscI	TGGCCA	1 cut(s)	1134
MslI	CAYNNNNRTG	2 cut(s)	176, 2004
Msp20I	TGGCCA	1 cut(s)	1134
MspCI	CTTAAG	3 cut(s)	1289, 1805, 2366
MspI	CCGG	2 cut(s)	203, 459
MspR9I	CCNGG	4 cut(s)	203, 460, 1055, 2123
MunI	CAATTG	1 cut(s)	954
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	2 cut(s)	1055, 2123
MwoI	GCNNNNNNNGC	3 cut(s)	370, 947, 1070
NciI	CCSGG	2 cut(s)	203, 460
NdeI	CATATG	4 cut(s)	1554, 1765, 2026, 2094
NdeII	GATC	9 cut(s)	66, 165, 180, 622, 1084, 1545, 1831, 1860, 1975
NlaIV	GGNNCC	2 cut(s)	888, 1203
NmuCI	GTSAC	3 cut(s)	674, 898, 1318
NsiI	ATGCAT	2 cut(s)	913, 1660
NspI	RCATGY	3 cut(s)	1425, 1523, 1816
PaeI	GCATGC	1 cut(s)	1523
PaqCI	CACCTGC	2 cut(s)	203, 1136
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	5 cut(s)	595, 977, 1283, 1733, 1787
PflMI	CCANNNNNTGG	1 cut(s)	1060
PkrI	GCNGC	6 cut(s)	468, 558, 952, 1667, 1829, 2182
PleI	GAGTC	1 cut(s)	2239
PpsI	GAGTC	1 cut(s)	2239
Ppu21I	YACGTR	1 cut(s)	1113
PshBI	ATTAAT	5 cut(s)	1019, 1124, 1365, 1758, 2145
PsiI	TTATAA	1 cut(s)	2039
Psp6I	CCWGG	2 cut(s)	1053, 2121
PspFI	CCCAGC	1 cut(s)	2117
PspGI	CCWGG	2 cut(s)	1053, 2121
PspN4I	GGNNCC	2 cut(s)	888, 1203
PspPI	GGNCC	3 cut(s)	468, 1215, 1510
PsuI	RGATCY	2 cut(s)	165, 1975
RsaI	GTAC	2 cut(s)	1010, 1507
RsaNI	GTAC	2 cut(s)	1009, 1506
RseI	CAYNNNNRTG	2 cut(s)	176, 2004
SatI	GCNGC	6 cut(s)	467, 557, 951, 1666, 1828, 2181
Sau3AI	GATC	9 cut(s)	66, 165, 180, 622, 1084, 1545, 1831, 1860, 1975
Sau96I	GGNCC	3 cut(s)	468, 1215, 1510
SchI	GAGTC	1 cut(s)	2240
ScrFI	CCNGG	4 cut(s)	203, 460, 1055, 2123
SduI	GDGCHC	2 cut(s)	810, 2011
SfaNI	GCATC	6 cut(s)	1068, 1360, 1383, 1465, 1810, 2378
SfcI	CTRYAG	2 cut(s)	1219, 2299
SinI	GGWCC	1 cut(s)	1215
SmiI	ATTTAAAT	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	176, 2004
SmlI	CTYRAG	4 cut(s)	1289, 1805, 1918, 2366
SmoI	CTYRAG	4 cut(s)	1289, 1805, 1918, 2366
SnaBI	TACGTA	1 cut(s)	1113
SphI	GCATGC	1 cut(s)	1523
SsiI	CCGC	8 cut(s)	45, 169, 232, 466, 557, 688, 2107, 2180
SspI	AATATT	1 cut(s)	1482
SspMI	CTAG	5 cut(s)	839, 849, 1101, 1259, 1784
StyD4I	CCNGG	4 cut(s)	201, 458, 1053, 2121
StyI	CCWWGG	1 cut(s)	1437
SwaI	ATTTAAAT	1 cut(s)	324
TaiI	ACGT	6 cut(s)	491, 695, 1010, 1115, 1632, 1774
TaqI	TCGA	4 cut(s)	1003, 1083, 1880, 2277
TauI	GCSGC	3 cut(s)	469, 559, 2183
TfiI	GAWTC	5 cut(s)	595, 977, 1283, 1733, 1787
TscAI	CASTG	4 cut(s)	535, 1142, 1198, 1217
TseFI	GTSAC	3 cut(s)	674, 898, 1318
TseI	GCWGC	3 cut(s)	950, 1665, 1827
Tsp45I	GTSAC	3 cut(s)	674, 898, 1318
TspGWI	ACGGA	3 cut(s)	85, 142, 2300
TspRI	CASTG	4 cut(s)	535, 1142, 1198, 1217
Van91I	CCANNNNNTGG	1 cut(s)	1060
Vha464I	CTTAAG	3 cut(s)	1289, 1805, 2366
VneI	GTGCAC	1 cut(s)	2007
VpaK11BI	GGWCC	1 cut(s)	1215
VspI	ATTAAT	5 cut(s)	1019, 1124, 1365, 1758, 2145
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	3 cut(s)	1425, 1523, 1816
XmiI	GTMKAC	1 cut(s)	590
XspI	CTAG	5 cut(s)	839, 849, 1101, 1259, 1784
Zsp2I	ATGCAT	2 cut(s)	913, 1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.