Rh2AG069100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001743
Physical Location & Seq
Forward (+)
5712024 .. 5715003
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG069100.1

Sequence Viewer

Length: 2670 bp
ATGATTAGAAAACTGACGGCCACGATCACCCCATTCAAGCACCAATTCTTTTTCTTCTCCTCCTCCTCTCCACCACCACCACCAGCGGACAACCTCCCTTCCCAGCTCTTCGCCATCCTCTCCCGCCCAAACTGGCAAAAACACCCCTCCCTCAAAGCCCTTATCCCTTCCATATCCCCCTCCCACGTCTCCTCCCTCTTCTCCCTCAACCCGGTCCACCCCCGAACCGCCCTCCACTTCTTCACCTGGCTCGCCCACAACCCCAAATTCCACCACAACGTCCACTCCCACTCCTCCCTCCTCGCCCTCCTCCTCCGCAACGGCTTCTCCGGCCCCGCCGAGAGGGTCCGCATTTCGATGATTAAGGCTTCAATTTCTAACGCCGACGCCCGGTTCGTGCTGGACCGGTTGCGCCGGTTCAAGCACGAATTCGGGTTCAAGATCACCCTCAGGTGTTATGATTCTCTTTTATTTTCAATTTCCAAGTTTTTAGGGATTGAAGATTTGAAAATGTTGTATTTGGAAATGTTGGAGGATAAAATCTCCCCTGATTTGCATATATATAATATCATGGTGAATGCTTATTGTAGATTAGGCAATGTAGTTGAGGCTGGTGTCTATGTTAGTAAGATCGTTGAGGCGGGTTTGAAGCCGAATACGAATACTTACAATTCTTTGATAATGGGGCATTGTAGGAATAAGGATGTGGATAGTGCTTACAGGACTTTTAAGGTGATTCCCAACAACGGTTGTGCAAGAGATGTGGTCTCGTATAATGTATTGATACACGGGCTCTGTGAGGCTGGCAGGAGTAACGAGGCGTTTGAGTTGTACTCTAATATGGAGAAGGATGAGTGTTTACCAGATGCGCCGACGTATAATGTTCTTATTCGTGCATTGTGTAGAGTGGGGAGGAGATTGGAAGGGATGAGTTTGTTTAAGGAGATGAAAGACAAGGGTTGTGAGCCTAGTGTAAATACTTATAATGTGCTCATTACTAGCCTGTGTGACGACAATAAGCTTCAGTATGCTAGGAAGGTTCTAGACCTGATGTCCGGGAAAGGGTTGGTTCCGGATGTCGTCACGTACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCGGTTGAGGCTGCGTTTGGGATTCTGGGTTTGATGGAATCTAATAAGTGTCGTCCAAATGCTCGCACGTTTACTGAATTGATTCATGGCTTTTGTAAAAGGAATAATGTGCACCAGGCAATGGCGCTTCTTGATAGGATGCTTGAACGGAAGCTCTCACCAGACCAGATTACATATAATTCGTTGATCAATGGGCAGTGTAAAGCAGGTCATGTAGATAGTGCTTATAGGTTGCTTAGTTTGATGAAACATAGTGGTTTAGTTCCTGACCAGTGGACTTACAGTGTCATCATCGACAGTCTCTGTAAGTTGGGGAGATTAAAAGAAGCTCAAGCCCTCTTCGATTCTCTCAAGGACAAAGGCATCAAATCTAATGAAGTGATATTTACGGCTTTACTTGATGGTTACTGCAAGATTGGGAAAATCGATGATGCTCGCACTTTATTTAATAGAATGCTTGTTGAGGGTTGTTTCCCAAACTCGTATACTTACTGTGCCTTCCTAGGTGGGCTGTGCAAAGAGGGAAAAACAAAGGAAGCATTGTCAGTGGTGGAACAGATGCTAAGTAGTGGTGTGAAGCCTACAGTCCACACTTGTAACGTTCTAATTAACCATGTGCTGAAAGAAGGGGATTTCAACCATGCTCAGAGGTTTTTGAATGAATTTGTTTCTCTTGGTTACCGACCTGATGCAGTTATGTACGGTACATTTGTTCATGCATATTGCAGCATAGATAATATAAAAGAAGCAGAGAAGGTAATGACTAAGATGGATGAAGAAGGAATTTCTGCAGATTCATTGACATACGCATTTTTAATCGAGGCATATCTTCGTTTGGGATTAATAGATTCTGCATTTGATGTCTTTAAGCGCATGTTTGATGCTCATTGCAACCCTTGTCATCGCATCTATTACTTGCTCATCAAACACCTGTCAAATGAAAAGTTGCTGCAGACCGACGATAATGTAGTAGGACTTCATATGGTTTCAAGTGTCCCATCAGCTGATATGTGGAAGACAGTGGATTTTGAAATTGCTTTAGAGCTCCTTGAGAAGATGAATGAACATGGTTGTTTACCGAATGTGAAAACTTACGGTGAGCTTATAGTAGCACTTTGCAAAGTTAGGAACTTGGAAGTAGCCCGTAAGTTGTATGCTCATATGAGAGATACCAGCATTTCTCCTAGTGAGGATATTTGTAACTCTCTTCTTAAATGTTGCTGCGAATTGAAGTTGTATGGAGAAGCAGCTATTCTGGTGGACGCTATGATTCAGCTTGGTTATTTACCAGCATTGGAGTCGTGCAAATTGGTTGTATGTGGACTTTTTGAAGAAGAGAATAGTGAGAAGGCAAATTCTGTTTTCTGCAGAATTCTTTGTTGCGCATATAACTACGATGAAGTAGCCTGGAAAGTTCTTCTTGAAGGTTTACTTACGAGGGGTCATATCAATAGATGCTCTGAGATGGTAACCGTCATCGAAAATATGGGTTACAAGCTTCATCCTGAGACCTATTCAATGTTAATTGAGGGATTTGATGGAATATAA

Protein Analysis

889

Amino Acids

100.15

Weight (kDa)

7.13

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 173 - 280 2.5e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 183 - 231 1.8e-09 PPR repeat family
PPR_3 PF13812 210 - 263 1.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 215 - 244 5.8e-09 PPR repeat
PPR_2 PF13041 218 - 266 2.5e-13 PPR repeat family
PPR_long PF17177 232 - 369 1.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 249 - 282 6.4e-11 PPR repeat
PPR_3 PF13812 250 - 299 1.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 253 - 302 1.9e-18 PPR repeat family
PPR PF01535 256 - 286 8.1e-07 PPR repeat
PPR_3 PF13812 277 - 333 5.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 285 - 317 6.7e-07 PPR repeat
PPR_2 PF13041 288 - 337 3e-16 PPR repeat family
PPR PF01535 292 - 321 1.1e-07 PPR repeat
PPR_long PF17177 310 - 471 5.4e-14 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 311 - 370 1.4e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 319 - 351 7.6e-08 PPR repeat
PPR_2 PF13041 327 - 363 4.8e-07 PPR repeat family
TPR_24 PF23276 343 - 423 6e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 347 - 405 3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 354 - 387 4.3e-12 PPR repeat
PPR_2 PF13041 358 - 407 1.5e-17 PPR repeat family
PPR PF01535 361 - 391 2.4e-07 PPR repeat
PPR_1 PF12854 391 - 421 1.1e-09 PPR repeat
PPR_3 PF13812 396 - 438 3.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 397 - 442 2.7e-13 PPR repeat family
PPR_3 PF13812 417 - 473 6.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 426 - 457 7.3e-12 PPR repeat
PPR_2 PF13041 428 - 477 5.7e-17 PPR repeat family
PPR PF01535 431 - 461 1.7e-06 PPR repeat
PPR_1 PF12854 460 - 490 7.6e-10 PPR repeat
PPR PF01535 467 - 496 3.4e-06 PPR repeat
PPR_long PF17177 482 - 596 5.6e-09 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 485 - 591 2.1e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 487 - 543 2.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 494 - 526 9.6e-09 PPR repeat
PPR_2 PF13041 499 - 547 4.3e-15 PPR repeat family
PPR PF01535 501 - 531 4.2e-07 PPR repeat
PPR_1 PF12854 530 - 561 7.9e-09 PPR repeat
PPR_3 PF13812 533 - 579 5.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 541 - 578 5.6e-09 PPR repeat family
PPR_3 PF13812 593 - 650 1.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 600 - 631 9.2e-06 PPR repeat
PPR_2 PF13041 603 - 648 7.1e-08 PPR repeat family
PPR_long PF17177 713 - 782 1.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 723 - 781 3.4e-07 Pentatricopeptide repeat domain
PPR_long PF17177 754 - 884 6.9e-06 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 984
Acc16I TGCGCA 1 cut(s) 2506
Acc36I ACCTGC 1 cut(s) 1319
AccB7I CCANNNNNTGG 1 cut(s) 1243
AccBSI CCGCTC 1 cut(s) 1124
AccI GTMKAC 1 cut(s) 1607
AccIII TCCGGA 1 cut(s) 1072
AciI CCGC 8 cut(s) 86, 124, 228, 316, 336, 349, 641, 1124
AclI AACGTT 1 cut(s) 1722
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 6 cut(s) 266, 428, 1784, 1905, 2476, 2493
AcuI CTGAAG 1 cut(s) 1007
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 4 cut(s) 833, 1088, 1823, 1828
AfiI CCNNNNNNNGG 6 cut(s) 211, 342, 390, 746, 1062, 1243
AgeI ACCGGT 1 cut(s) 405
AhdI GACNNNNNGTC 1 cut(s) 1051
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 3 cut(s) 245, 1236, 2528
Alw21I GWGCWC 3 cut(s) 993, 1236, 2169
Alw26I GTCTC 4 cut(s) 193, 772, 1427, 2624
Alw44I GTGCAC 1 cut(s) 1232
AlwNI CAGNNNCTG 1 cut(s) 1425
Aor13HI TCCGGA 1 cut(s) 1072
AoxI GGCC 2 cut(s) 18, 331
ApaLI GTGCAC 1 cut(s) 1232
ApeKI GCWGC 5 cut(s) 1133, 1848, 2071, 2343, 2369
ApoI RAATTY 6 cut(s) 266, 428, 1784, 1905, 2476, 2493
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AseI ATTAAT 1 cut(s) 1964
AsiGI ACCGGT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 1203
AspA2I CCTAGG 1 cut(s) 1624
AspLEI GCGC 5 cut(s) 414, 871, 1249, 1995, 2507
AspS9I GGNCC 4 cut(s) 214, 332, 346, 403
AsuC2I CCSGG 3 cut(s) 212, 391, 1057
AsuHPI GGTGA 7 cut(s) 19, 235, 436, 586, 745, 1272, 2231
AvaII GGWCC 3 cut(s) 214, 346, 403
AvrII CCTAGG 1 cut(s) 1624
AxyI CCTNAGG 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 1236
BaeI ACNNNNGTAYC 2 cut(s) 1818, 1851
BanII GRGCYC 2 cut(s) 795, 2169
BarI GAAGNNNNNNTAC 2 cut(s) 2082, 2114
BbsI GAAGAC 1 cut(s) 2144
Bbv12I GWGCWC 3 cut(s) 993, 1236, 2169
BbvI GCAGC 5 cut(s) 1120, 1860, 2058, 2330, 2381
BccI CCATC 8 cut(s) 122, 1097, 1150, 1517, 1885, 2128, 2581, 2654
BceAI ACGGC 3 cut(s) 33, 337, 1527
BcgI CGANNNNNNTGC 2 cut(s) 2403, 2437
BciT130I CCWGG 3 cut(s) 247, 1238, 2530
BclI TGATCA 1 cut(s) 1308
BcnI CCSGG 3 cut(s) 212, 391, 1057
BcoDI GTCTC 4 cut(s) 193, 772, 1427, 2624
BfaI CTAG 6 cut(s) 969, 999, 1032, 1043, 1625, 2307
BfmI CTRYAG 4 cut(s) 1704, 1911, 2072, 2488
BfoI RGCGCY 1 cut(s) 1250
BfuAI ACCTGC 1 cut(s) 1319
BisI GCNGC 5 cut(s) 1134, 1849, 2072, 2344, 2370
BlnI CCTAGG 1 cut(s) 1624
BlsI GCNGC 5 cut(s) 1135, 1850, 2073, 2345, 2371
Bme1390I CCNGG 6 cut(s) 212, 247, 391, 1057, 1238, 2530
Bme18I GGWCC 3 cut(s) 214, 346, 403
BmeRI GACNNNNNGTC 1 cut(s) 1051
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 4 cut(s) 214, 332, 346, 403
BmiI GGNNCC 3 cut(s) 334, 347, 1071
BmrFI CCNGG 6 cut(s) 212, 247, 391, 1057, 1238, 2530
BmsI GCATC 9 cut(s) 856, 1251, 1494, 1543, 1671, 1801, 1993, 2037, 2567
BpiI GAAGAC 1 cut(s) 2144
BplI GAGNNNNNCTC 2 cut(s) 818, 850
BpuEI CTTGAG 3 cut(s) 1437, 1457, 2192
BpuMI CCSGG 3 cut(s) 212, 391, 1057
Bsa29I ATCGAT 1 cut(s) 1548
BsaAI YACGTR 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 387
BsaI GGTCTC 2 cut(s) 772, 2624
BsaJI CCNNGG 1 cut(s) 1624
BsaWI WCCGGW 2 cut(s) 405, 1072
BsaXI ACNNNNNCTCC 8 cut(s) 176, 206, 269, 275, 299, 305, 311, 341
Bsc4I CCNNNNNNNGG 6 cut(s) 211, 342, 390, 746, 1062, 1243
Bse118I RCCGGY 2 cut(s) 405, 414
Bse1I ACTGG 2 cut(s) 137, 1393
Bse21I CCTNAGG 1 cut(s) 449
Bse3DI GCAATG 3 cut(s) 604, 1248, 2008
BseAI TCCGGA 1 cut(s) 1072
BseBI CCWGG 3 cut(s) 247, 1238, 2530
BseCI ATCGAT 1 cut(s) 1548
BseDI CCNNGG 1 cut(s) 1624
BseGI GGATG 8 cut(s) 114, 709, 856, 933, 1081, 1266, 1900, 2623
BseLI CCNNNNNNNGG 6 cut(s) 211, 342, 390, 746, 1062, 1243
BseMI GCAATG 3 cut(s) 604, 1248, 2008
BseMII CTCAG 4 cut(s) 463, 1781, 2574, 2619
BseNI ACTGG 2 cut(s) 137, 1393
BseRI GAGGAG 9 cut(s) 49, 52, 55, 181, 283, 290, 299, 302, 928
BseSI GKGCMC 1 cut(s) 1236
BseXI GCAGC 5 cut(s) 1120, 1860, 2058, 2330, 2381
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 2 cut(s) 20, 333
BshTI ACCGGT 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 1548
BsiHKAI GWGCWC 3 cut(s) 993, 1236, 2169
BsiSI CCGG 7 cut(s) 212, 330, 391, 406, 415, 1056, 1073
BslFI GGGAC 1 cut(s) 2102
BslI CCNNNNNNNGG 6 cut(s) 211, 342, 390, 746, 1062, 1243
BsmAI GTCTC 4 cut(s) 193, 772, 1427, 2624
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 2102
BsmI GAATGC 2 cut(s) 583, 1581
BsnI GGCC 2 cut(s) 20, 333
Bso31I GGTCTC 2 cut(s) 772, 2624
Bsp1286I GDGCHC 4 cut(s) 795, 993, 1236, 2169
Bsp13I TCCGGA 1 cut(s) 1072
Bsp143I GATC 4 cut(s) 24, 441, 630, 1308
BspACI CCGC 8 cut(s) 86, 124, 228, 316, 336, 349, 641, 1124
BspANI GGCC 2 cut(s) 20, 333
BspCNI CTCAG 4 cut(s) 462, 1780, 2575, 2620
BspDI ATCGAT 1 cut(s) 1548
BspEI TCCGGA 1 cut(s) 1072
BspLI GGNNCC 3 cut(s) 334, 347, 1071
BspMAI CTGCAG 3 cut(s) 1915, 2076, 2492
BspMI ACCTGC 1 cut(s) 1319
BspQI GCTCTTC 1 cut(s) 113
BspTNI GGTCTC 2 cut(s) 772, 2624
BsrBI CCGCTC 1 cut(s) 1124
BsrDI GCAATG 3 cut(s) 604, 1248, 2008
BsrFI RCCGGY 2 cut(s) 405, 414
BsrI ACTGG 2 cut(s) 137, 1393
BssAI RCCGGY 2 cut(s) 405, 414
BssECI CCNNGG 1 cut(s) 1624
BssMI GATC 4 cut(s) 24, 441, 630, 1308
BssNAI GTATAC 1 cut(s) 1608
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 1624
Bst1107I GTATAC 1 cut(s) 1608
Bst2UI CCWGG 3 cut(s) 247, 1238, 2530
Bst4CI ACNGT 9 cut(s) 749, 1406, 1421, 1616, 1708, 1826, 2143, 2219, 2596
Bst6I CTCTTC 5 cut(s) 113, 203, 1466, 2334, 2451
BstACI GRCGYC 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 1086
BstC8I GCNNGC 4 cut(s) 252, 805, 1186, 1558
BstDEI CTNAG 7 cut(s) 449, 1358, 1685, 1767, 1887, 2583, 2628
BstEII GGTNACC 2 cut(s) 1799, 2590
BstF5I GGATG 8 cut(s) 114, 709, 856, 933, 1081, 1266, 1900, 2623
BstH2I RGCGCY 1 cut(s) 1250
BstHHI GCGC 5 cut(s) 414, 871, 1249, 1995, 2507
BstKTI GATC 4 cut(s) 27, 444, 633, 1311
BstMAI GTCTC 4 cut(s) 193, 772, 1427, 2624
BstMBI GATC 4 cut(s) 24, 441, 630, 1308
BstMWI GCNNNNNNNGC 2 cut(s) 330, 1130
BstNI CCWGG 3 cut(s) 247, 1238, 2530
BstNSI RCATGY 1 cut(s) 1999
BstPI GGTNACC 2 cut(s) 1799, 2590
BstSCI CCNGG 6 cut(s) 210, 245, 389, 1055, 1236, 2528
BstSFI CTRYAG 4 cut(s) 1704, 1911, 2072, 2488
BstSLI GKGCMC 1 cut(s) 1236
BstV1I GCAGC 5 cut(s) 1120, 1860, 2058, 2330, 2381
BstV2I GAAGAC 1 cut(s) 2144
BstZ17I GTATAC 1 cut(s) 1608
Bsu15I ATCGAT 1 cut(s) 1548
Bsu36I CCTNAGG 1 cut(s) 449
BsuRI GGCC 2 cut(s) 20, 333
BsuTUI ATCGAT 1 cut(s) 1548
BtgZI GCGATG 1 cut(s) 2009
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 8 cut(s) 114, 709, 856, 933, 1081, 1266, 1900, 2623
BtsI GCAGTG 1 cut(s) 1325
BtsIMutI CAGTG 5 cut(s) 1325, 1400, 1411, 1674, 2148
BveI ACCTGC 1 cut(s) 1319
Cac8I GCNNGC 4 cut(s) 252, 805, 1186, 1558
CaiI CAGNNNCTG 1 cut(s) 1425
CfoI GCGC 5 cut(s) 414, 871, 1249, 1995, 2507
Cfr10I RCCGGY 2 cut(s) 405, 414
Cfr13I GGNCC 4 cut(s) 214, 332, 346, 403
ClaI ATCGAT 1 cut(s) 1548
CseI GACGC 2 cut(s) 395, 2393
Csp6I GTAC 4 cut(s) 832, 1087, 1822, 1827
CspAI ACCGGT 1 cut(s) 405
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 8 cut(s) 571, 1208, 1334, 1736, 1763, 1838, 1996, 2189
CviQI GTAC 4 cut(s) 832, 1087, 1822, 1827
DdeI CTNAG 7 cut(s) 449, 1358, 1685, 1767, 1887, 2583, 2628
DpnI GATC 4 cut(s) 26, 443, 632, 1310
DpnII GATC 4 cut(s) 24, 441, 630, 1308
DriI GACNNNNNGTC 1 cut(s) 1051
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 5 cut(s) 113, 203, 1466, 2334, 2451
Eam1105I GACNNNNNGTC 1 cut(s) 1051
EarI CTCTTC 5 cut(s) 113, 203, 1466, 2334, 2451
Ecl136II GAGCTC 1 cut(s) 2167
Eco130I CCWWGG 1 cut(s) 1624
Eco24I GRGCYC 2 cut(s) 795, 2169
Eco31I GGTCTC 2 cut(s) 772, 2624
Eco47I GGWCC 3 cut(s) 214, 346, 403
Eco53kI GAGCTC 1 cut(s) 2167
Eco57I CTGAAG 1 cut(s) 1007
Eco81I CCTNAGG 1 cut(s) 449
Eco91I GGTNACC 2 cut(s) 1799, 2590
EcoICRI GAGCTC 1 cut(s) 2167
EcoO65I GGTNACC 2 cut(s) 1799, 2590
EcoRI GAATTC 2 cut(s) 428, 2493
EcoRII CCWGG 3 cut(s) 245, 1236, 2528
EcoT14I CCWWGG 1 cut(s) 1624
EcoT22I ATGCAT 2 cut(s) 1096, 1843
EcoT38I GRGCYC 2 cut(s) 795, 2169
ErhI CCWWGG 1 cut(s) 1624
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 8 cut(s) 574, 1211, 1337, 1739, 1766, 1841, 1999, 2192
FalI AAGNNNNNCTT 4 cut(s) 2526, 2558, 2538, 2570
FaqI GGGAC 1 cut(s) 2102
FatI CATG 8 cut(s) 570, 1207, 1333, 1735, 1762, 1837, 1995, 2188
FauI CCCGC 3 cut(s) 131, 343, 634
FauNDI CATATG 2 cut(s) 2103, 2283
FbaI TGATCA 1 cut(s) 1308
FblI GTMKAC 1 cut(s) 1607
Fnu4HI GCNGC 5 cut(s) 1134, 1849, 2072, 2344, 2370
FokI GGATG 8 cut(s) 101, 716, 863, 940, 1088, 1273, 1907, 2610
FriOI GRGCYC 2 cut(s) 795, 2169
Fsp4HI GCNGC 5 cut(s) 1134, 1849, 2072, 2344, 2370
FspBI CTAG 6 cut(s) 969, 999, 1032, 1043, 1625, 2307
FspI TGCGCA 1 cut(s) 2506
GlaI GCGC 5 cut(s) 413, 870, 1248, 1994, 2506
GluI GCNGC 5 cut(s) 1134, 1849, 2072, 2344, 2370
GsaI CCCAGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 1250
HaeIII GGCC 2 cut(s) 20, 333
HapII CCGG 7 cut(s) 212, 330, 391, 406, 415, 1056, 1073
HgaI GACGC 2 cut(s) 395, 2393
HhaI GCGC 5 cut(s) 414, 871, 1249, 1995, 2507
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 8 cut(s) 574, 1211, 1337, 1739, 1766, 1841, 1999, 2192
Hin6I GCGC 5 cut(s) 412, 869, 1247, 1993, 2505
HinP1I GCGC 5 cut(s) 412, 869, 1247, 1993, 2505
HindIII AAGCTT 2 cut(s) 1019, 2618
HpaII CCGG 7 cut(s) 212, 330, 391, 406, 415, 1056, 1073
HphI GGTGA 7 cut(s) 19, 235, 436, 586, 745, 1272, 2231
Hpy188I TCNGA 2 cut(s) 1770, 2584
Hpy188III TCNNGA 7 cut(s) 439, 1043, 1073, 1253, 1388, 2543, 2627
Hpy99I CGWCG 3 cut(s) 389, 877, 2084
HpyCH4III ACNGT 9 cut(s) 749, 1406, 1421, 1616, 1708, 1826, 2143, 2219, 2596
HpyCH4IV ACGT 6 cut(s) 186, 279, 875, 1085, 1190, 1722
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 1130
HpyF3I CTNAG 7 cut(s) 449, 1358, 1685, 1767, 1887, 2583, 2628
HpySE526I ACGT 6 cut(s) 186, 279, 875, 1085, 1190, 1722
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 8 cut(s) 574, 1211, 1337, 1739, 1766, 1841, 1999, 2192
HspAI GCGC 5 cut(s) 412, 869, 1247, 1993, 2505
Kpn2I TCCGGA 1 cut(s) 1072
Ksp22I TGATCA 1 cut(s) 1308
Kzo9I GATC 4 cut(s) 24, 441, 630, 1308
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 2 cut(s) 1121, 2172
Lsp1109I GCAGC 5 cut(s) 1120, 1860, 2058, 2330, 2381
LweI GCATC 9 cut(s) 856, 1251, 1494, 1543, 1671, 1801, 1993, 2037, 2567
MaeI CTAG 6 cut(s) 969, 999, 1032, 1043, 1625, 2307
MaeII ACGT 6 cut(s) 186, 279, 875, 1085, 1190, 1722
MaeIII GTNAC 9 cut(s) 812, 1007, 1081, 1526, 1718, 1799, 2321, 2590, 2612
MalI GATC 4 cut(s) 26, 443, 632, 1310
MbiI CCGCTC 1 cut(s) 1124
MboI GATC 4 cut(s) 24, 441, 630, 1308
MhlI GDGCHC 4 cut(s) 795, 993, 1236, 2169
MlyI GAGTC 1 cut(s) 2429
MmeI TCCRAC 1 cut(s) 510
Mph1103I ATGCAT 2 cut(s) 1096, 1843
MroI TCCGGA 1 cut(s) 1072
MroXI GAANNNNTTC 1 cut(s) 1203
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 2 cut(s) 86, 2126
MspI CCGG 7 cut(s) 212, 330, 391, 406, 415, 1056, 1073
MspR9I CCNGG 6 cut(s) 212, 247, 391, 1057, 1238, 2530
Mva1269I GAATGC 2 cut(s) 583, 1581
MvaI CCWGG 3 cut(s) 247, 1238, 2530
MwoI GCNNNNNNNGC 2 cut(s) 330, 1130
NciI CCSGG 3 cut(s) 212, 391, 1057
NdeI CATATG 2 cut(s) 2103, 2283
NdeII GATC 4 cut(s) 24, 441, 630, 1308
NlaIII CATG 8 cut(s) 574, 1211, 1337, 1739, 1766, 1841, 1999, 2192
NlaIV GGNNCC 3 cut(s) 334, 347, 1071
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 1007, 1081
NsbI TGCGCA 1 cut(s) 2506
NsiI ATGCAT 2 cut(s) 1096, 1843
NspI RCATGY 1 cut(s) 1999
PciSI GCTCTTC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 2 cut(s) 583, 1581
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 9 cut(s) 461, 736, 1144, 1160, 1204, 1466, 1916, 1970, 2392
PflMI CCANNNNNTGG 1 cut(s) 1243
PfoI TCCNGGA 1 cut(s) 1055
PinAI ACCGGT 1 cut(s) 405
PkrI GCNGC 5 cut(s) 1135, 1850, 2073, 2345, 2371
PleI GAGTC 1 cut(s) 2428
PpsI GAGTC 1 cut(s) 2428
Ppu21I YACGTR 1 cut(s) 1086
PshBI ATTAAT 1 cut(s) 1964
PsiI TTATAA 1 cut(s) 984
Psp124BI GAGCTC 1 cut(s) 2169
Psp1406I AACGTT 1 cut(s) 1722
Psp6I CCWGG 3 cut(s) 245, 1236, 2528
PspEI GGTNACC 2 cut(s) 1799, 2590
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 3 cut(s) 245, 1236, 2528
PspN4I GGNNCC 3 cut(s) 334, 347, 1071
PspPI GGNCC 4 cut(s) 214, 332, 346, 403
PstI CTGCAG 3 cut(s) 1915, 2076, 2492
PstNI CAGNNNCTG 1 cut(s) 1425
PvuII CAGCTG 1 cut(s) 2126
RsaI GTAC 4 cut(s) 833, 1088, 1823, 1828
RsaNI GTAC 4 cut(s) 832, 1087, 1822, 1827
RseI CAYNNNNRTG 1 cut(s) 356
SacI GAGCTC 1 cut(s) 2169
SapI GCTCTTC 1 cut(s) 113
SatI GCNGC 5 cut(s) 1134, 1849, 2072, 2344, 2370
Sau3AI GATC 4 cut(s) 24, 441, 630, 1308
Sau96I GGNCC 4 cut(s) 214, 332, 346, 403
SchI GAGTC 1 cut(s) 2429
ScrFI CCNGG 6 cut(s) 212, 247, 391, 1057, 1238, 2530
SduI GDGCHC 4 cut(s) 795, 993, 1236, 2169
SfaNI GCATC 9 cut(s) 856, 1251, 1494, 1543, 1671, 1801, 1993, 2037, 2567
SfcI CTRYAG 4 cut(s) 1704, 1911, 2072, 2488
SinI GGWCC 3 cut(s) 214, 346, 403
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 3 cut(s) 1452, 1472, 2171
SmoI CTYRAG 3 cut(s) 1452, 1472, 2171
SsiI CCGC 8 cut(s) 86, 124, 228, 316, 336, 349, 641, 1124
SspMI CTAG 6 cut(s) 969, 999, 1032, 1043, 1625, 2307
SstI GAGCTC 1 cut(s) 2169
StyD4I CCNGG 6 cut(s) 210, 245, 389, 1055, 1236, 2528
StyI CCWWGG 1 cut(s) 1624
TaaI ACNGT 9 cut(s) 749, 1406, 1421, 1616, 1708, 1826, 2143, 2219, 2596
TaiI ACGT 6 cut(s) 189, 282, 878, 1088, 1193, 1725
TaqI TCGA 6 cut(s) 356, 1416, 1464, 1548, 1941, 2601
TaqII GACCGA 1 cut(s) 2093
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 9 cut(s) 461, 736, 1144, 1160, 1204, 1466, 1916, 1970, 2392
TscAI CASTG 5 cut(s) 1325, 1400, 1411, 1674, 2148
TseFI GTSAC 2 cut(s) 1007, 1081
TseI GCWGC 5 cut(s) 1133, 1848, 2071, 2343, 2369
Tsp45I GTSAC 2 cut(s) 1007, 1081
TspGWI ACGGA 1 cut(s) 1285
TspRI CASTG 5 cut(s) 1325, 1400, 1411, 1674, 2148
Van91I CCANNNNNTGG 1 cut(s) 1243
VneI GTGCAC 1 cut(s) 1232
VpaK11BI GGWCC 3 cut(s) 214, 346, 403
VspI ATTAAT 1 cut(s) 1964
XapI RAATTY 6 cut(s) 266, 428, 1784, 1905, 2476, 2493
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 1 cut(s) 1999
XmaJI CCTAGG 1 cut(s) 1624
XmiI GTMKAC 1 cut(s) 1607
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 6 cut(s) 969, 999, 1032, 1043, 1625, 2307
Zsp2I ATGCAT 2 cut(s) 1096, 1843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.