Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315275.1

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Forward (+)

64 .. 931

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 868 bp

atgttgtatttggaaatgttggaggataaaatctcccctgatttgcatatatataatatcatggtgaatgcttattgtagattaggcaatgtagttgaggctggtgtctatgttagtaagatcgttgaggcgggtttgaagccgaatacgaatacttacaattctttgataatggggcattgtaggaataaggatgtggatagtgcttacaggacttttaaggtgatccccaacaagggttgtgcaagagatgtggtttcgtataatgtattgatacacgggctctgtgaggctggcaggagtaacgaggcgtttgagttgtactctaatatggagaaggatgagtgtttaccagatgcgccgacgtataatgttcttattcatgcattgtgtagaggggggaggagattggaagggatgagtttgtttaaggagatgaaagagaagggttgtgagcctagtgtaaatacttataatgtgctcattactagcctgtgtgacgaaaataagcttcagtatgctaggaaggttctagacctgatgtcggggaaagggttggttccggatgttgtcacgtacaatgcattgattgatgggtattgcaaggagggagcggttgaggctgcgtttgggattctgggtttgatggaatctactaagtgtcgtccaaatgctcgcacgtttactgaattgattcatggcttttgtaaaaggaataatgtgcaccaggcaatggcgcttcttgataggatgcttgaacggaagctctcaccagaccagattacatataattcgttgatcaatgggcagtgtaaagcaggtcatgtagatagtgcttataggttgcttagtttgatgaaacatagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

289

Amino Acids

32.37

Weight (kDa)

7.51

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	809
AccB7I	CCANNNNNTGG	1 cut(s)	733
AccBSI	CCGCTC	1 cut(s)	614
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	2 cut(s)	131, 614
AclWI	GGATC	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	323, 578
AfiI	CCNNNNNNNGG	4 cut(s)	235, 236, 544, 733
AgsI	TTSAA	2 cut(s)	139, 758
AhdI	GACNNNNNGTC	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	726
AluBI	AGCT	2 cut(s)	511, 766
AluI	AGCT	2 cut(s)	511, 766
Alw21I	GWGCWC	2 cut(s)	483, 726
Alw44I	GTGCAC	1 cut(s)	722
AlwI	GGATC	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	562
ApaLI	GTGCAC	1 cut(s)	722
ApeKI	GCWGC	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	2 cut(s)	361, 739
AsuHPI	GGTGA	3 cut(s)	76, 235, 762
BaeGI	GKGCMC	1 cut(s)	726
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	483, 726
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	2 cut(s)	587, 640
BciT130I	CCWGG	1 cut(s)	728
BclI	TGATCA	1 cut(s)	798
BfaI	CTAG	4 cut(s)	459, 489, 522, 533
BfoI	RGCGCY	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	809
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	1 cut(s)	728
BmeRI	GACNNNNNGTC	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	346, 741
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BsaAI	YACGTR	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 236, 544, 733
Bse3DI	GCAATG	2 cut(s)	94, 738
BseAI	TCCGGA	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	728
BseGI	GGATG	5 cut(s)	199, 346, 423, 571, 756
BseLI	CCNNNNNNNGG	4 cut(s)	235, 236, 544, 733
BseMI	GCAATG	2 cut(s)	94, 738
BseRI	GAGGAG	1 cut(s)	418
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	1 cut(s)	610
BsiHKAI	GWGCWC	2 cut(s)	483, 726
BsiSI	CCGG	1 cut(s)	563
BslI	CCNNNNNNNGG	4 cut(s)	235, 236, 544, 733
BsmI	GAATGC	1 cut(s)	73
Bsp1286I	GDGCHC	3 cut(s)	285, 483, 726
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	120, 225, 798
BspACI	CCGC	2 cut(s)	131, 614
BspEI	TCCGGA	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	561
BspMI	ACCTGC	1 cut(s)	809
BspPI	GGATC	1 cut(s)	220
BsrBI	CCGCTC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	94, 738
BssMI	GATC	3 cut(s)	120, 225, 798
Bst2UI	CCWGG	1 cut(s)	728
BstBAI	YACGTR	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	295, 676
BstDEI	CTNAG	2 cut(s)	657, 848
BstF5I	GGATG	5 cut(s)	199, 346, 423, 571, 756
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	2 cut(s)	361, 739
BstKTI	GATC	3 cut(s)	123, 228, 801
BstMBI	GATC	3 cut(s)	120, 225, 798
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	726
BstV1I	GCAGC	1 cut(s)	610
BtsCI	GGATG	5 cut(s)	199, 346, 423, 571, 756
BtsI	GCAGTG	1 cut(s)	815
BtsIMutI	CAGTG	1 cut(s)	815
BveI	ACCTGC	1 cut(s)	809
Cac8I	GCNNGC	2 cut(s)	295, 676
CfoI	GCGC	2 cut(s)	361, 739
Csp6I	GTAC	2 cut(s)	322, 577
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviAII	CATG	4 cut(s)	61, 383, 698, 824
CviQI	GTAC	2 cut(s)	322, 577
DdeI	CTNAG	2 cut(s)	657, 848
DpnI	GATC	3 cut(s)	122, 227, 800
DpnII	GATC	3 cut(s)	120, 225, 798
DriI	GACNNNNNGTC	1 cut(s)	541
Eam1105I	GACNNNNNGTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	726
EcoT22I	ATGCAT	2 cut(s)	388, 586
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	4 cut(s)	64, 386, 701, 827
FatI	CATG	4 cut(s)	60, 382, 697, 823
FauI	CCCGC	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	798
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	5 cut(s)	206, 353, 430, 578, 763
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	4 cut(s)	459, 489, 522, 533
GlaI	GCGC	2 cut(s)	360, 738
GluI	GCNGC	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	740
HapII	CCGG	1 cut(s)	563
HhaI	GCGC	2 cut(s)	361, 739
Hin1II	CATG	4 cut(s)	64, 386, 701, 827
Hin6I	GCGC	2 cut(s)	359, 737
HinP1I	GCGC	2 cut(s)	359, 737
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	634, 650, 694
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	3 cut(s)	76, 235, 762
Hpy166II	GTNNAC	3 cut(s)	350, 684, 724
Hpy188III	TCNNGA	3 cut(s)	533, 563, 743
Hpy8I	GTNNAC	3 cut(s)	350, 684, 724
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	4 cut(s)	331, 407, 439, 520
HpyCH4IV	ACGT	3 cut(s)	365, 575, 680
HpyCH4V	TGCA	6 cut(s)	46, 245, 386, 584, 603, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	2 cut(s)	657, 848
HpySE526I	ACGT	3 cut(s)	365, 575, 680
Hsp92II	CATG	4 cut(s)	64, 386, 701, 827
HspAI	GCGC	2 cut(s)	359, 737
Kpn2I	TCCGGA	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	798
Kzo9I	GATC	3 cut(s)	120, 225, 798
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	2 cut(s)	346, 741
MaeI	CTAG	4 cut(s)	459, 489, 522, 533
MaeII	ACGT	3 cut(s)	365, 575, 680
MaeIII	GTNAC	3 cut(s)	302, 497, 571
MalI	GATC	3 cut(s)	122, 227, 800
MbiI	CCGCTC	1 cut(s)	614
MboI	GATC	3 cut(s)	120, 225, 798
MhlI	GDGCHC	3 cut(s)	285, 483, 726
MluCI	AATT	3 cut(s)	160, 689, 790
MnlI	CCTC	9 cut(s)	16, 91, 121, 283, 301, 389, 396, 601, 613
Mph1103I	ATGCAT	2 cut(s)	388, 586
MroI	TCCGGA	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	2 cut(s)	219, 429
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	728
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	728
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	3 cut(s)	120, 225, 798
NlaIII	CATG	4 cut(s)	64, 386, 701, 827
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	2 cut(s)	497, 571
NsiI	ATGCAT	2 cut(s)	388, 586
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	3 cut(s)	634, 650, 694
PflMI	CCANNNNNTGG	1 cut(s)	733
PkrI	GCNGC	1 cut(s)	625
Ppu21I	YACGTR	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	561
RsaI	GTAC	2 cut(s)	323, 578
RsaNI	GTAC	2 cut(s)	322, 577
SaqAI	TTAA	2 cut(s)	219, 429
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	3 cut(s)	120, 225, 798
ScrFI	CCNGG	1 cut(s)	728
SduI	GDGCHC	3 cut(s)	285, 483, 726
SfaNI	GCATC	2 cut(s)	346, 741
Sse9I	AATT	3 cut(s)	160, 689, 790
SsiI	CCGC	2 cut(s)	131, 614
SspMI	CTAG	4 cut(s)	459, 489, 522, 533
StyD4I	CCNGG	1 cut(s)	726
TaiI	ACGT	3 cut(s)	368, 578, 683
TasI	AATT	3 cut(s)	160, 689, 790
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	634, 650, 694
Tru1I	TTAA	2 cut(s)	219, 429
Tru9I	TTAA	2 cut(s)	219, 429
TscAI	CASTG	1 cut(s)	815
TseFI	GTSAC	2 cut(s)	497, 571
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	2 cut(s)	497, 571
TspDTI	ATGAA	3 cut(s)	371, 452, 686
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	1 cut(s)	815
Van91I	CCANNNNNTGG	1 cut(s)	733
VneI	GTGCAC	1 cut(s)	722
XbaI	TCTAGA	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	4 cut(s)	459, 489, 522, 533
Zsp2I	ATGCAT	2 cut(s)	388, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.