RLG00000016282

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001743
Physical Location & Seq
Forward (+)
5382473 .. 5385169
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016282

Sequence Viewer

Length: 2619 bp
ATGATTAGAAAACCGACGGCCACGATCACCCCATTCAAGCACCAACTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTGTATTCCCTGTCCTCCTCCACCACCACCACCACCACCGGACAACCTCCCTTCCCAGCTCTTCGCCATCCTCTCCCGCCCAAACTGGCAAAAACACCCCTCCCTCAAAGCCCTTTTCCCCTCCATATCCCCCTCCCACGTCTCCTCCCTCTTCTCCCTGAACCCGGTCCACCCCCGAACCGCCCTCCACTTCTTCACCTGGCTCGCCCACAACCCCAAATTCCACCACAACGTCCACTCCCACTCCTCCCTCCTAGCCCTCCTCCTCCGCAACGGCTTCTCCGGCCCTGCCGAGAGGGTCCGGATTTCGATGATTAAGGCTTCAATTTCTAACGCCGACGCCCGGTTCGTGCTGGACCGGTTGCGCCGGTTCAAGCACGAATTCGGGTTCAAGATCACTCTCAGGTGTTATGATTCTCTTTTGTTTTCAATTTCCAAGTTGTTAGGGATTGAAGATTTGAAAATGTTGTATTTGGAAATGTTGGAGGATAAAATCTCCCCTGATTTGCATATATATAATATCATGGTGAATGCTTATTGTAGATTAGGCAATGTAGTTGAGGCTGGTGTCTATGTTAGTAAGATCGTTGAAGCGGGTTTGAAGCCGAATACGAATACTTACAATTCTTTGATAATGGGGCATTGTAGGAATAAGGATGTGGATAGTGCTTATAGGACTTTTAAGGTGATCCCCAACAAGGGTTGTGCAAGAGATGTGGTTTCGTATAATGTGTTGATACATGGGCTCTGTGAGGCTGGCAGGAGTGATGAGGCGTTTGAGTTGTACTCTAATATGGAGAAGGATGAGTGTTTACCAGATGCGCCGACGTATAATGTTCTTATTCATGCATTGTGTAGAGGGGGGAGGAGATTGGAAGGGATGAATTTGTTTAAGGAGATGAAAGAGAAGGGTTGTGAGCCTAGTGTAAATACTTATAATGTGCTCATTACTAGCCTGTGTGATGAAAATAAGCTTCAGTATGCTAGGAAGGTTCTAGACCTGATGTCGGGGAAAGGGTTGGTTCCAGATGTTGTCACGTACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCGGTTGAGGCTGCGTTTGGGATTCTGGGTTTGATGGAATCTAATAAGTGTCGTCCAAATGCTCGCACGTTTACTGAATTGATTCATGGCTATTGTAAAAGGAATAATGTGCACCAGGCAATGGCGCTTCTTGATAGAATGCTTGAACGGAAGCTCTCACCAGACCGAATTACATATAATTCGCTGATCAATGGGCAGTGTAAAGCAGGTCATGTAGATAGTGCTTATAGGTTGCTTAGTTTGATGAAACATGGTGGTTTAGTTCCTGACCAGTGGACTTACAGTGTTATCATCGACAGTCTCTGTAAGTTGGGGAGATTAAAAGAAGCTCAAGCCTTCTTTGATTCTCTCAAGGACAAGGGCATCAAGTCTAATGAAGTGATATTTACAGCTTTACTTGATGGTTACTGCAAGATTGGGAAAATCGATGATGCTCGCATTTTATTTAATAGAATGCTTGCTGAGGGTTGTTTCCCAAACTCATATACTTACTGTGCCTTCCTAGGTGGGCTGTGCAAAGAGGGAAAAACAAAGGAAGCATTATCAGTGGTGGAACAGATGCTGAGTACTGGTGTGAAGCCTACAGTCCACACTTGTAACGTTCTAATTAACCATGTGCTGAAAGAAGGGGATTTCAACCATGCTCAGAGCATAGATAATATAAAAGAAGCAGAGAAGGTAATGACTAAGATGGATGAAGAAGGAATTTCTGCAGATTCATTGACATACGCATTTTTAATCGAGGCATATCTTCGTTTGGGATTAATAGATTCTGCTTTTGATGTCTTTAAGCGCATGTTTGATGCTCATTGCAACCCTTGTCATCGCATCTATTACTTGCTCATCAAACACCTGTCAAATGAAAAGTTGCTGCAGACTGACGATAATGTAGTAGGACTTCATATGGTTTCAAGTGTCCCATCAGCTGATATGTGGAAGACAGTGGATTTTGAAATTGCTTTAGAGCTCCTTGAGAAGATGAATGAACATGGTTGTGCACCAAATGTGAAAACTTACAGCGAGCTTATAGTAGCACTTTGCAAAGTTAGGAACTTGGAAGTAGCCCGTAAGTTGTATGCTCATATGAGAGATACCAGCATTTCTCCTAGTGAGGATATTTGTAACTCTCTTCTTAAATGTTGCTGCGAGTTGAAGGTGTATGGAGAAGCAGCTATTCTGGTGGACGCTATGATTCAGCTTGGTTATTTACCAGCATTGGAGTCGTGCAAATTGCTTGTATGTGGACTTTTTGAAGAAGAGAATAACGAGAAGGCAAATTCTGTTTTCTGCAGAATTCTTTGTTGCGCGTATAACTACGATGAAGTAGCCTGGAAAGTTCTTCTTGAAGGTTTACTTAAGAGGGGTCATATCAATAGATGCTCTGAGATGGTAACCGTCATCGAAAAGATGGGTTACAAGCTTCATCCTGAGACCTATTCAATGTTAATTGAGGGATTTGATGGAATATAA

Protein Analysis

873

Amino Acids

98.08

Weight (kDa)

7.47

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 182 - 289 2.7e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 192 - 241 5.1e-10 PPR repeat family
PPR_3 PF13812 219 - 272 1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 224 - 253 5.6e-09 PPR repeat
PPR_2 PF13041 227 - 275 1.4e-13 PPR repeat family
PPR_long PF17177 241 - 380 1.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 257 - 308 3.2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 258 - 291 9.5e-12 PPR repeat
PPR_2 PF13041 262 - 311 1.6e-18 PPR repeat family
PPR PF01535 265 - 295 1.7e-07 PPR repeat
PPR_3 PF13812 286 - 342 1.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 294 - 326 1.4e-07 PPR repeat
PPR_2 PF13041 301 - 346 3.3e-15 PPR repeat family
PPR PF01535 301 - 330 1.2e-07 PPR repeat
PPR_long PF17177 319 - 480 1.8e-13 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 328 - 360 5.9e-08 PPR repeat
PPR_2 PF13041 332 - 372 1.3e-08 PPR repeat family
TPR_24 PF23276 352 - 431 1.3e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 356 - 415 2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 363 - 396 4.2e-12 PPR repeat
PPR_2 PF13041 367 - 416 2.2e-17 PPR repeat family
PPR PF01535 370 - 400 2.4e-07 PPR repeat
PPR_1 PF12854 400 - 430 1e-09 PPR repeat
PPR_3 PF13812 405 - 447 2.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 406 - 451 1.3e-13 PPR repeat family
PPR_1 PF12854 435 - 466 8.9e-12 PPR repeat
PPR_2 PF13041 437 - 486 2.9e-16 PPR repeat family
PPR PF01535 440 - 469 6.6e-06 PPR repeat
PPR_1 PF12854 469 - 499 2.3e-09 PPR repeat
PPR_long PF17177 490 - 595 5.3e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 497 - 552 1.3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 503 - 535 8.7e-08 PPR repeat
PPR_2 PF13041 508 - 556 5.1e-15 PPR repeat family
PPR PF01535 510 - 540 1.1e-06 PPR repeat
PPR_1 PF12854 539 - 570 7.7e-09 PPR repeat
TPR_24 PF23276 543 - 649 3.4e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 550 - 588 7.7e-09 PPR repeat family
PPR_long PF17177 696 - 765 9.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 699 - 731 1.8e-06 PPR repeat family
PPR_3 PF13812 706 - 764 6.8e-08 Pentatricopeptide repeat domain
PPR_long PF17177 738 - 867 3.7e-06 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1011
Acc36I ACCTGC 1 cut(s) 1346
AccB7I CCANNNNNTGG 1 cut(s) 1270
AccBSI CCGCTC 1 cut(s) 1151
AccII CGCG 1 cut(s) 2456
AccIII TCCGGA 1 cut(s) 375
AciI CCGC 5 cut(s) 151, 255, 343, 668, 1151
AclI AACGTT 1 cut(s) 1749
AclWI GGATC 1 cut(s) 757
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 6 cut(s) 293, 455, 958, 1854, 2425, 2442
AcuI CTGAAG 1 cut(s) 1034
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 3 cut(s) 860, 1115, 1717
AfiI CCNNNNNNNGG 6 cut(s) 238, 417, 772, 773, 1081, 1270
AflII CTTAAG 1 cut(s) 2504
AgeI ACCGGT 1 cut(s) 432
AhdI GACNNNNNGTC 1 cut(s) 1078
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 3 cut(s) 272, 1263, 2477
Alw21I GWGCWC 4 cut(s) 1020, 1263, 2118, 2149
Alw26I GTCTC 3 cut(s) 220, 1454, 2573
Alw44I GTGCAC 2 cut(s) 1259, 2145
AlwI GGATC 1 cut(s) 757
AlwNI CAGNNNCTG 2 cut(s) 1452, 1711
Aor13HI TCCGGA 1 cut(s) 375
AoxI GGCC 2 cut(s) 18, 358
ApaLI GTGCAC 2 cut(s) 1259, 2145
ApeKI GCWGC 4 cut(s) 1160, 2020, 2292, 2318
ApoI RAATTY 6 cut(s) 293, 455, 958, 1854, 2425, 2442
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AseI ATTAAT 1 cut(s) 1913
AsiGI ACCGGT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 1230
AspA2I CCTAGG 1 cut(s) 1651
AspLEI GCGC 5 cut(s) 441, 898, 1276, 1944, 2456
AspS9I GGNCC 4 cut(s) 241, 359, 373, 430
AsuC2I CCSGG 2 cut(s) 239, 418
AsuHPI GGTGA 5 cut(s) 19, 262, 613, 772, 1299
AvaII GGWCC 3 cut(s) 241, 373, 430
AvrII CCTAGG 1 cut(s) 1651
BaeGI GKGCMC 2 cut(s) 1263, 2149
BanII GRGCYC 2 cut(s) 822, 2118
BarI GAAGNNNNNNTAC 2 cut(s) 2031, 2063
BbsI GAAGAC 1 cut(s) 2093
Bbv12I GWGCWC 4 cut(s) 1020, 1263, 2118, 2149
BbvCI CCTCAGC 1 cut(s) 1611
BbvI GCAGC 4 cut(s) 1147, 2007, 2279, 2330
BccI CCATC 9 cut(s) 149, 1124, 1177, 1544, 1834, 2077, 2530, 2551, 2603
BceAI ACGGC 2 cut(s) 33, 364
BcgI CGANNNNNNTGC 2 cut(s) 2352, 2386
BciT130I CCWGG 3 cut(s) 274, 1265, 2479
BclI TGATCA 1 cut(s) 1335
BcnI CCSGG 2 cut(s) 239, 418
BcoDI GTCTC 3 cut(s) 220, 1454, 2573
BfaI CTAG 7 cut(s) 329, 996, 1026, 1059, 1070, 1652, 2256
BfmI CTRYAG 4 cut(s) 1731, 1860, 2021, 2437
BfoI RGCGCY 1 cut(s) 1277
BfrI CTTAAG 1 cut(s) 2504
BfuAI ACCTGC 1 cut(s) 1346
BisI GCNGC 4 cut(s) 1161, 2021, 2293, 2319
BlnI CCTAGG 1 cut(s) 1651
BlsI GCNGC 4 cut(s) 1162, 2022, 2294, 2320
BmcAI AGTACT 1 cut(s) 1717
Bme1390I CCNGG 5 cut(s) 239, 274, 418, 1265, 2479
Bme18I GGWCC 3 cut(s) 241, 373, 430
BmeRI GACNNNNNGTC 1 cut(s) 1078
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 4 cut(s) 241, 359, 373, 430
BmiI GGNNCC 2 cut(s) 374, 1098
BmrFI CCNGG 5 cut(s) 239, 274, 418, 1265, 2479
BmsI GCATC 7 cut(s) 883, 1521, 1570, 1698, 1942, 1986, 2516
BpiI GAAGAC 1 cut(s) 2093
BplI GAGNNNNNCTC 2 cut(s) 845, 877
Bpu10I CCTNAGC 1 cut(s) 1611
BpuEI CTTGAG 3 cut(s) 1464, 1484, 2141
BpuMI CCSGG 2 cut(s) 239, 418
Bsa29I ATCGAT 1 cut(s) 1575
BsaAI YACGTR 1 cut(s) 1113
BsaHI GRCGYC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 2573
BsaJI CCNNGG 1 cut(s) 1651
BsaWI WCCGGW 3 cut(s) 112, 375, 432
BsaXI ACNNNNNCTCC 8 cut(s) 203, 233, 296, 302, 326, 332, 338, 368
Bsc4I CCNNNNNNNGG 6 cut(s) 238, 417, 772, 773, 1081, 1270
Bse118I RCCGGY 2 cut(s) 432, 441
Bse1I ACTGG 3 cut(s) 164, 1420, 1723
Bse3DI GCAATG 3 cut(s) 631, 1275, 1957
BseAI TCCGGA 1 cut(s) 375
BseBI CCWGG 3 cut(s) 274, 1265, 2479
BseCI ATCGAT 1 cut(s) 1575
BseDI CCNNGG 1 cut(s) 1651
BseGI GGATG 6 cut(s) 141, 736, 883, 960, 1849, 2572
BseLI CCNNNNNNNGG 6 cut(s) 238, 417, 772, 773, 1081, 1270
BseMI GCAATG 3 cut(s) 631, 1275, 1957
BseMII CTCAG 6 cut(s) 490, 1602, 1703, 1808, 2523, 2568
BseNI ACTGG 3 cut(s) 164, 1420, 1723
BseSI GKGCMC 2 cut(s) 1263, 2149
BseXI GCAGC 4 cut(s) 1147, 2007, 2279, 2330
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 2456
BshFI GGCC 2 cut(s) 20, 360
BshTI ACCGGT 1 cut(s) 432
BshVI ATCGAT 1 cut(s) 1575
BsiHKAI GWGCWC 4 cut(s) 1020, 1263, 2118, 2149
BsiSI CCGG 7 cut(s) 113, 239, 357, 376, 418, 433, 442
BslFI GGGAC 1 cut(s) 2051
BslI CCNNNNNNNGG 6 cut(s) 238, 417, 772, 773, 1081, 1270
BsmAI GTCTC 3 cut(s) 220, 1454, 2573
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 2051
BsmI GAATGC 3 cut(s) 610, 1293, 1608
BsnI GGCC 2 cut(s) 20, 360
Bso31I GGTCTC 1 cut(s) 2573
Bsp1286I GDGCHC 5 cut(s) 822, 1020, 1263, 2118, 2149
Bsp13I TCCGGA 1 cut(s) 375
Bsp143I GATC 5 cut(s) 24, 468, 657, 762, 1335
BspACI CCGC 5 cut(s) 151, 255, 343, 668, 1151
BspANI GGCC 2 cut(s) 20, 360
BspCNI CTCAG 6 cut(s) 489, 1603, 1704, 1807, 2524, 2569
BspDI ATCGAT 1 cut(s) 1575
BspEI TCCGGA 1 cut(s) 375
BspFNI CGCG 1 cut(s) 2456
BspLI GGNNCC 2 cut(s) 374, 1098
BspMAI CTGCAG 3 cut(s) 1864, 2025, 2441
BspMI ACCTGC 1 cut(s) 1346
BspPI GGATC 1 cut(s) 757
BspQI GCTCTTC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 2504
BspTNI GGTCTC 1 cut(s) 2573
BsrBI CCGCTC 1 cut(s) 1151
BsrDI GCAATG 3 cut(s) 631, 1275, 1957
BsrFI RCCGGY 2 cut(s) 432, 441
BsrI ACTGG 3 cut(s) 164, 1420, 1723
BssAI RCCGGY 2 cut(s) 432, 441
BssECI CCNNGG 1 cut(s) 1651
BssMI GATC 5 cut(s) 24, 468, 657, 762, 1335
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 1651
Bst2UI CCWGG 3 cut(s) 274, 1265, 2479
Bst4CI ACNGT 6 cut(s) 1433, 1448, 1643, 1735, 2092, 2545
Bst6I CTCTTC 5 cut(s) 53, 140, 230, 2283, 2400
BstACI GRCGYC 1 cut(s) 414
BstAFI CTTAAG 1 cut(s) 2504
BstBAI YACGTR 1 cut(s) 1113
BstC8I GCNNGC 6 cut(s) 279, 832, 1213, 1585, 1608, 2171
BstDEI CTNAG 8 cut(s) 476, 1385, 1611, 1712, 1794, 1836, 2532, 2577
BstEII GGTNACC 1 cut(s) 2539
BstF5I GGATG 6 cut(s) 141, 736, 883, 960, 1849, 2572
BstFNI CGCG 1 cut(s) 2456
BstH2I RGCGCY 1 cut(s) 1277
BstHHI GCGC 5 cut(s) 441, 898, 1276, 1944, 2456
BstKTI GATC 5 cut(s) 27, 471, 660, 765, 1338
BstMAI GTCTC 3 cut(s) 220, 1454, 2573
BstMBI GATC 5 cut(s) 24, 468, 657, 762, 1335
BstMWI GCNNNNNNNGC 2 cut(s) 357, 1157
BstNI CCWGG 3 cut(s) 274, 1265, 2479
BstNSI RCATGY 1 cut(s) 1948
BstPI GGTNACC 1 cut(s) 2539
BstSCI CCNGG 5 cut(s) 237, 272, 416, 1263, 2477
BstSFI CTRYAG 4 cut(s) 1731, 1860, 2021, 2437
BstSLI GKGCMC 2 cut(s) 1263, 2149
BstUI CGCG 1 cut(s) 2456
BstV1I GCAGC 4 cut(s) 1147, 2007, 2279, 2330
BstV2I GAAGAC 1 cut(s) 2093
Bsu15I ATCGAT 1 cut(s) 1575
BsuRI GGCC 2 cut(s) 20, 360
BsuTUI ATCGAT 1 cut(s) 1575
BtgZI GCGATG 1 cut(s) 1958
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 6 cut(s) 141, 736, 883, 960, 1849, 2572
BtsI GCAGTG 1 cut(s) 1352
BtsIMutI CAGTG 5 cut(s) 1352, 1427, 1438, 1701, 2097
BveI ACCTGC 1 cut(s) 1346
Cac8I GCNNGC 6 cut(s) 279, 832, 1213, 1585, 1608, 2171
CaiI CAGNNNCTG 2 cut(s) 1452, 1711
CfoI GCGC 5 cut(s) 441, 898, 1276, 1944, 2456
Cfr10I RCCGGY 2 cut(s) 432, 441
Cfr13I GGNCC 4 cut(s) 241, 359, 373, 430
ClaI ATCGAT 1 cut(s) 1575
CseI GACGC 2 cut(s) 422, 2342
Csp6I GTAC 3 cut(s) 859, 1114, 1716
CspAI ACCGGT 1 cut(s) 432
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviQI GTAC 3 cut(s) 859, 1114, 1716
DdeI CTNAG 8 cut(s) 476, 1385, 1611, 1712, 1794, 1836, 2532, 2577
DpnI GATC 5 cut(s) 26, 470, 659, 764, 1337
DpnII GATC 5 cut(s) 24, 468, 657, 762, 1335
DriI GACNNNNNGTC 1 cut(s) 1078
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 5 cut(s) 53, 140, 230, 2283, 2400
Eam1105I GACNNNNNGTC 1 cut(s) 1078
EarI CTCTTC 5 cut(s) 53, 140, 230, 2283, 2400
Ecl136II GAGCTC 1 cut(s) 2116
Eco130I CCWWGG 1 cut(s) 1651
Eco24I GRGCYC 2 cut(s) 822, 2118
Eco31I GGTCTC 1 cut(s) 2573
Eco47I GGWCC 3 cut(s) 241, 373, 430
Eco53kI GAGCTC 1 cut(s) 2116
Eco57I CTGAAG 1 cut(s) 1034
Eco91I GGTNACC 1 cut(s) 2539
EcoICRI GAGCTC 1 cut(s) 2116
EcoO65I GGTNACC 1 cut(s) 2539
EcoRI GAATTC 2 cut(s) 455, 2442
EcoRII CCWGG 3 cut(s) 272, 1263, 2477
EcoT14I CCWWGG 1 cut(s) 1651
EcoT22I ATGCAT 2 cut(s) 925, 1123
EcoT38I GRGCYC 2 cut(s) 822, 2118
ErhI CCWWGG 1 cut(s) 1651
Esp3I CGTCTC 1 cut(s) 220
FalI AAGNNNNNCTT 4 cut(s) 2475, 2507, 2487, 2519
FaqI GGGAC 1 cut(s) 2051
FauI CCCGC 2 cut(s) 158, 661
FauNDI CATATG 2 cut(s) 2052, 2232
FbaI TGATCA 1 cut(s) 1335
Fnu4HI GCNGC 4 cut(s) 1161, 2021, 2293, 2319
FokI GGATG 6 cut(s) 128, 743, 890, 967, 1856, 2559
FriOI GRGCYC 2 cut(s) 822, 2118
Fsp4HI GCNGC 4 cut(s) 1161, 2021, 2293, 2319
FspBI CTAG 7 cut(s) 329, 996, 1026, 1059, 1070, 1652, 2256
GlaI GCGC 5 cut(s) 440, 897, 1275, 1943, 2455
GluI GCNGC 4 cut(s) 1161, 2021, 2293, 2319
GsaI CCCAGC 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 1277
HaeIII GGCC 2 cut(s) 20, 360
HapII CCGG 7 cut(s) 113, 239, 357, 376, 418, 433, 442
HgaI GACGC 2 cut(s) 422, 2342
HhaI GCGC 5 cut(s) 441, 898, 1276, 1944, 2456
Hin1I GRCGYC 1 cut(s) 414
Hin6I GCGC 5 cut(s) 439, 896, 1274, 1942, 2454
HinP1I GCGC 5 cut(s) 439, 896, 1274, 1942, 2454
HindIII AAGCTT 2 cut(s) 1046, 2567
HinfI GANTC 9 cut(s) 488, 1171, 1187, 1231, 1493, 1865, 1919, 2341, 2369
HpaII CCGG 7 cut(s) 113, 239, 357, 376, 418, 433, 442
HphI GGTGA 5 cut(s) 19, 262, 613, 772, 1299
Hpy188I TCNGA 2 cut(s) 1797, 2533
Hpy188III TCNNGA 8 cut(s) 376, 466, 1070, 1100, 1280, 1415, 2492, 2576
Hpy99I CGWCG 3 cut(s) 19, 416, 904
HpyCH4III ACNGT 6 cut(s) 1433, 1448, 1643, 1735, 2092, 2545
HpyCH4IV ACGT 6 cut(s) 213, 306, 902, 1112, 1217, 1749
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 1157
HpyF3I CTNAG 8 cut(s) 476, 1385, 1611, 1712, 1794, 1836, 2532, 2577
HpySE526I ACGT 6 cut(s) 213, 306, 902, 1112, 1217, 1749
Hsp92I GRCGYC 1 cut(s) 414
HspAI GCGC 5 cut(s) 439, 896, 1274, 1942, 2454
Kpn2I TCCGGA 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 1335
Kzo9I GATC 5 cut(s) 24, 468, 657, 762, 1335
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 1148, 2121
Lsp1109I GCAGC 4 cut(s) 1147, 2007, 2279, 2330
LweI GCATC 7 cut(s) 883, 1521, 1570, 1698, 1942, 1986, 2516
MaeI CTAG 7 cut(s) 329, 996, 1026, 1059, 1070, 1652, 2256
MaeII ACGT 6 cut(s) 213, 306, 902, 1112, 1217, 1749
MaeIII GTNAC 6 cut(s) 1108, 1553, 1745, 2270, 2539, 2561
MalI GATC 5 cut(s) 26, 470, 659, 764, 1337
MbiI CCGCTC 1 cut(s) 1151
MboI GATC 5 cut(s) 24, 468, 657, 762, 1335
MhlI GDGCHC 5 cut(s) 822, 1020, 1263, 2118, 2149
MlyI GAGTC 1 cut(s) 2378
MmeI TCCRAC 1 cut(s) 537
Mph1103I ATGCAT 2 cut(s) 925, 1123
MroI TCCGGA 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 1230
MslI CAYNNNNRTG 1 cut(s) 2142
MspA1I CMGCKG 1 cut(s) 2075
MspCI CTTAAG 1 cut(s) 2504
MspI CCGG 7 cut(s) 113, 239, 357, 376, 418, 433, 442
MspR9I CCNGG 5 cut(s) 239, 274, 418, 1265, 2479
Mva1269I GAATGC 3 cut(s) 610, 1293, 1608
MvaI CCWGG 3 cut(s) 274, 1265, 2479
MvnI CGCG 1 cut(s) 2456
MwoI GCNNNNNNNGC 2 cut(s) 357, 1157
NciI CCSGG 2 cut(s) 239, 418
NdeI CATATG 2 cut(s) 2052, 2232
NdeII GATC 5 cut(s) 24, 468, 657, 762, 1335
NlaIV GGNNCC 2 cut(s) 374, 1098
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 1108
NsiI ATGCAT 2 cut(s) 925, 1123
NspI RCATGY 1 cut(s) 1948
PciSI GCTCTTC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PctI GAATGC 3 cut(s) 610, 1293, 1608
PdmI GAANNNNTTC 1 cut(s) 1230
PfeI GAWTC 8 cut(s) 488, 1171, 1187, 1231, 1493, 1865, 1919, 2341
PflMI CCANNNNNTGG 1 cut(s) 1270
PinAI ACCGGT 1 cut(s) 432
PkrI GCNGC 4 cut(s) 1162, 2022, 2294, 2320
PleI GAGTC 1 cut(s) 2377
PpsI GAGTC 1 cut(s) 2377
Ppu21I YACGTR 1 cut(s) 1113
PshBI ATTAAT 1 cut(s) 1913
PsiI TTATAA 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 2118
Psp1406I AACGTT 1 cut(s) 1749
Psp6I CCWGG 3 cut(s) 272, 1263, 2477
PspEI GGTNACC 1 cut(s) 2539
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 3 cut(s) 272, 1263, 2477
PspN4I GGNNCC 2 cut(s) 374, 1098
PspPI GGNCC 4 cut(s) 241, 359, 373, 430
PstI CTGCAG 3 cut(s) 1864, 2025, 2441
PstNI CAGNNNCTG 2 cut(s) 1452, 1711
PvuII CAGCTG 1 cut(s) 2075
RsaI GTAC 3 cut(s) 860, 1115, 1717
RsaNI GTAC 3 cut(s) 859, 1114, 1716
RseI CAYNNNNRTG 1 cut(s) 2142
SacI GAGCTC 1 cut(s) 2118
SapI GCTCTTC 1 cut(s) 140
SatI GCNGC 4 cut(s) 1161, 2021, 2293, 2319
Sau3AI GATC 5 cut(s) 24, 468, 657, 762, 1335
Sau96I GGNCC 4 cut(s) 241, 359, 373, 430
ScaI AGTACT 1 cut(s) 1717
SchI GAGTC 1 cut(s) 2378
ScrFI CCNGG 5 cut(s) 239, 274, 418, 1265, 2479
SduI GDGCHC 5 cut(s) 822, 1020, 1263, 2118, 2149
SfaNI GCATC 7 cut(s) 883, 1521, 1570, 1698, 1942, 1986, 2516
SfcI CTRYAG 4 cut(s) 1731, 1860, 2021, 2437
SinI GGWCC 3 cut(s) 241, 373, 430
SmiMI CAYNNNNRTG 1 cut(s) 2142
SmlI CTYRAG 4 cut(s) 1479, 1499, 2120, 2504
SmoI CTYRAG 4 cut(s) 1479, 1499, 2120, 2504
SsiI CCGC 5 cut(s) 151, 255, 343, 668, 1151
SspMI CTAG 7 cut(s) 329, 996, 1026, 1059, 1070, 1652, 2256
SstI GAGCTC 1 cut(s) 2118
StyD4I CCNGG 5 cut(s) 237, 272, 416, 1263, 2477
StyI CCWWGG 1 cut(s) 1651
TaaI ACNGT 6 cut(s) 1433, 1448, 1643, 1735, 2092, 2545
TaiI ACGT 6 cut(s) 216, 309, 905, 1115, 1220, 1752
TaqI TCGA 5 cut(s) 383, 1443, 1575, 1890, 2550
TaqII GACCGA 1 cut(s) 1329
TatI WGTACW 2 cut(s) 858, 1715
TfiI GAWTC 8 cut(s) 488, 1171, 1187, 1231, 1493, 1865, 1919, 2341
TscAI CASTG 5 cut(s) 1352, 1427, 1438, 1701, 2097
TseFI GTSAC 1 cut(s) 1108
TseI GCWGC 4 cut(s) 1160, 2020, 2292, 2318
Tsp45I GTSAC 1 cut(s) 1108
TspGWI ACGGA 1 cut(s) 1312
TspRI CASTG 5 cut(s) 1352, 1427, 1438, 1701, 2097
Van91I CCANNNNNTGG 1 cut(s) 1270
Vha464I CTTAAG 1 cut(s) 2504
VneI GTGCAC 2 cut(s) 1259, 2145
VpaK11BI GGWCC 3 cut(s) 241, 373, 430
VspI ATTAAT 1 cut(s) 1913
XapI RAATTY 6 cut(s) 293, 455, 958, 1854, 2425, 2442
XbaI TCTAGA 1 cut(s) 1069
XceI RCATGY 1 cut(s) 1948
XmaJI CCTAGG 1 cut(s) 1651
XmnI GAANNNNTTC 1 cut(s) 1230
XspI CTAG 7 cut(s) 329, 996, 1026, 1059, 1070, 1652, 2256
ZrmI AGTACT 1 cut(s) 1717
Zsp2I ATGCAT 2 cut(s) 925, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.