Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Reverse (-)

16819845 .. 16822903

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG096400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2697 bp

ATGAGGAGAAAACCCATTCTCCCAAGCAGCAGCAGCAGCAGGGCCTTGTTTCTCCACCTCAATTCCAAACGCTTCTTCTCCTTCACTGCTTCCGCTTCCGCTTCTGAGCCAGTCCTCGACGATCTCCCCTCTCAGCTCTTGTCCATCCTCTCCCAACCCAATTGGCAAAGACACCCCTCCCTCAAACCCCTAATCCCCTCCATATCCCCATCCCATGTCTCCTCCCTCTTCTCCCTCAACCACCACCTCCCTCCCCAAACCGCCCTCGCCTTCTTCAACTGGATCGCCCTCAAACCCAACTTCACCCACTCCGTCCACTCCCACTCTTCTCTCCTCTCCCTTCTCCTCCCCAACCCTTCCTTCCTCTCCGTCGCCGAAAAGATCCGCATTTCCATGATCAAGTCCTCCACCTCCCCCCCTGACGCCCTCTTCGTCCTCCACCATCTCCGCTACTTGAACAAGACCCACTTCAAGCTCACCCTCAGGTCATACAACTTTCTTCTCATGTCATTGTCCAAGTTTTCGCTGTTTGATGATTTAAAAACTGTGTATATGGAGATTTTGGAGGATAAGGTTTCCCCCAATTTGCATACATTTAACACTATGGTCAATGCTTATTGTAAATTGGGGAATTTGGCTGAGGCAGAGGTGTATTTCAGTAAGATAGGGCAGGCCGGATTGCGGCCCGATACTTTTAGCTACACGTCTTTGATACTGGGGCATTGTAGGAATAAGGATGTGGACAGTGCTTATAGGGTGTTTAGGGTAATGCCGCAGAAGGAGTGTCGGAGAAATGAGGTTTCGTATACCAATCTGATACATGGGTTGTGTGAGGCGGATCGGATTGATGAGGCTTTAAAGTTGTTTTTGCAGATGGGGGAGGATGATTGTCAGCCGACTGTCCGCACGTTTACAGTTCTTATTTCTGCATTTTGTAGATTGGGGAAGAAATCAGAAGCAATGAAGTTGTTTAGAGAGATGAGGGAAAAGGGTTGTCAACCGAATGCTCATACTTATACGGTGCTCATTGATAGTATGTGCAAGGAGAATAAGCTAGGTGAGGCAAGGAAGTTGCTGAATGAGATGTTGGAGAAACGGTTGGTTCCTACTGTAGTCACATACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCAGTTGAGGCTGCAATTGATATTAAGGCTTTGATGGAATCAAATAAATGTTGTCCAAATGCTCGAACGTACAATGAATTAATTTTTGGGTTTTGTAAAAGGAAAGATGTAAACCAGGCGATGGCATTGCTCGCTAAGATGCTCGATCTGAAGCTCTCACCTAGTATGATTACGTATAACTCATTAATACATGGCCACTGTAAAGCAGGTGATTTAGACTGTGCTTATAGGTTGCTTGATTTGATGAAGGAAAGTGGCTTGGTTCCTGACCAGTGGACCTATGGTGTTTTTATAGACAGTCTTTGTAAGAGTGGGAGACTAGAAGAAGCTCATGCTCTGTTTGATTCTCTTCAGGAGAAAGGCGTAAAGTCAAATGAAGTGACATTTACTGCTTTGATTGATGGTTACTGCAAGGTGGGGAAAATTAATGATGCCCATTCCTTGTTTGATAGGATGCTTACAGAGGGCTGTAACCCAAACACATGCACTTACAATACCTTGGTAGATGGATTGTGCAAAGAAGGAAAATTGCAGGATGCAATATTACTGGTGGAGAAGATGTTAAGTACGGGCCTGACGCATGCACCACATACTTATTCTATACTGATCAAACATATGCTGAAAGAAGGGGACTTCGGCCATGCTCATAGACTGTTCAACCAGATGGTTTGTTCTGGTAGTAAACCGGACGTATTTATTTACACTTCGTTTATTCATGCATATTGCAGCATAGGGGATATAGAAGAGGCAGAAAAGCTGATGGTTAAGATGAGTGAAGAAGGAATTAGAGCAGATTCGTTGACTTACACATTATTGATTAATACATATGGACGTATGGGACTACTAGATTCTGCATTTGGTGTTCTTAAGCGCATGTTTGATGCTTGCTGCGATCCTTCTCACTATACCTATTCTTTCCTGATCAAACATCTTTTGCGCTTGAAGACGAATGACGATATAGTGAGACTTGATTTGGCCTCAAGCTTCATTGATATTGCTGATGTATGGAAGACAATGGATTATCAAAATGCTTTAGATCTGTTTGACAAGATGGTTGAACATGGCTGTGCACCCAATGGCAACACATATGAAAAGCTTATAATAGGTCTTTGCAAAGAGGGGCGCTTGGAAGTAGCCCAGAGGCTATATGTTCATATGAGAGATAGGCGGATTTCTCCCAGCCAGGATATTTATCATTCTCTTATTAATTGTTGCTGTCAGTTGCAAGTGTATGGAGAGGCGGCAAACCTGCTGGATACGATGATTGAGGATGGTTATTTACCAACATTAGAGTCTTCCAAGTTGCTTGTATGTGGGCTATTGATTGAGGAGAATATCGAGAAGGCAAAAGCCGTTTTCTGTAGTTTGCTCCGTTGTGAGTATAACTTTGATGAAGTAGCTTGGAAAGTTCTCCATGATGGTTTACTTAAGAGGGGTCTTGTCAATAGATGCTCTGAGTTGATAACCATCATGGAGCAGATGGGTTGCAAGCTTCATCCTCTGACATATTCAATGCTGATTGAGGGAATTGATGGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

898

Amino Acids

101.46

Weight (kDa)

6.89

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	192 - 219	3.2e-07	PPR repeat
PPR_2	PF13041	194 - 243	7.7e-11	PPR repeat family
PPR_1	PF12854	226 - 257	2.9e-09	PPR repeat
PPR_2	PF13041	229 - 277	1.8e-13	PPR repeat family
PPR_1	PF12854	260 - 292	3.7e-08	PPR repeat
PPR_2	PF13041	265 - 313	4.5e-15	PPR repeat family
PPR	PF01535	267 - 297	2.8e-06	PPR repeat
PPR_3	PF13812	288 - 345	1.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	296 - 328	1.9e-10	PPR repeat
PPR	PF01535	303 - 332	3.3e-09	PPR repeat
PPR_2	PF13041	307 - 348	1.2e-15	PPR repeat family
PPR_long	PF17177	319 - 408	1.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	322 - 381	1.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	330 - 362	1.6e-11	PPR repeat
PPR_2	PF13041	338 - 375	6.3e-10	PPR repeat family
PPR	PF01535	338 - 366	2.7e-06	PPR repeat
PPR_3	PF13812	357 - 413	2.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	366 - 393	2.4e-09	PPR repeat
PPR_2	PF13041	369 - 418	7.6e-16	PPR repeat family
PPR	PF01535	372 - 402	7.5e-06	PPR repeat
PPR_long	PF17177	397 - 479	3.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	402 - 432	1.1e-08	PPR repeat
PPR_2	PF13041	404 - 453	3.2e-13	PPR repeat family
PPR_3	PF13812	428 - 483	2.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	437 - 468	1.6e-12	PPR repeat
PPR_2	PF13041	439 - 488	2.8e-15	PPR repeat family
PPR	PF01535	442 - 472	2e-08	PPR repeat
PPR_1	PF12854	471 - 500	1.1e-08	PPR repeat
PPR	PF01535	478 - 507	4.4e-06	PPR repeat
PPR_2	PF13041	482 - 523	5.7e-12	PPR repeat family
PPR_long	PF17177	492 - 596	5.2e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	495 - 606	7.2e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	498 - 553	5.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	505 - 537	3.6e-11	PPR repeat
PPR_2	PF13041	510 - 558	3.1e-18	PPR repeat family
PPR	PF01535	512 - 542	9.3e-09	PPR repeat
PPR_1	PF12854	541 - 572	1e-13	PPR repeat
PPR_2	PF13041	544 - 590	3.9e-11	PPR repeat family
PPR	PF01535	548 - 576	3.6e-06	PPR repeat
PPR_2	PF13041	583 - 620	1.1e-07	PPR repeat family
PPR_3	PF13812	602 - 663	2.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	611 - 643	5e-09	PPR repeat
PPR_2	PF13041	614 - 661	1.5e-12	PPR repeat family
PPR	PF01535	618 - 647	2.1e-06	PPR repeat
PPR_3	PF13812	638 - 694	7.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	650 - 696	2.7e-08	PPR repeat family
PPR_long	PF17177	719 - 851	7.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	725 - 757	1.1e-06	PPR repeat family
PPR_3	PF13812	732 - 790	8.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	747 - 792	1.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2255
AarI	CACCTGC	1 cut(s)	1352
Acc36I	ACCTGC	2 cut(s)	1352, 2412
AccB7I	CCANNNNNTGG	1 cut(s)	1276
AccI	GTMKAC	1 cut(s)	806
AclWI	GGATC	4 cut(s)	290, 376, 846, 2042
AcoI	YGGCCR	2 cut(s)	1348, 1792
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	2 cut(s)	1325, 1490
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	2 cut(s)	1226, 1723
AfiI	CCNNNNNNNGG	2 cut(s)	681, 1276
AflII	CTTAAG	2 cut(s)	2021, 2582
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	7 cut(s)	277, 457, 472, 1813, 2098, 2213, 2667
AjiI	CACGTC	1 cut(s)	705
AjnI	CCWGG	2 cut(s)	1269, 2337
AjuI	GAANNNNNNNTTGG	8 cut(s)	59, 91, 344, 376, 1070, 1102, 1224, 1256
Alw21I	GWGCWC	2 cut(s)	1026, 2227
Alw26I	GTCTC	3 cut(s)	223, 1465, 2113
Alw44I	GTGCAC	1 cut(s)	2223
AlwI	GGATC	4 cut(s)	290, 376, 846, 2042
AoxI	GGCC	7 cut(s)	42, 672, 683, 1348, 1726, 1792, 2130
ApaLI	GTGCAC	1 cut(s)	2223
ApeKI	GCWGC	7 cut(s)	27, 30, 33, 36, 1166, 1881, 2043
ApoI	RAATTY	1 cut(s)	631
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AseI	ATTAAT	5 cut(s)	1235, 1340, 1581, 1974, 2361
AspLEI	GCGC	3 cut(s)	2028, 2094, 2280
AspS9I	GGNCC	4 cut(s)	42, 684, 1431, 1726
AsuHPI	GGTGA	5 cut(s)	295, 469, 1070, 1305, 1376
AvaII	GGWCC	1 cut(s)	1431
AxyI	CCTNAGG	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	2227
BaeI	ACNNNNGTAYC	2 cut(s)	809, 842
BalI	TGGCCA	1 cut(s)	1350
BbsI	GAAGAC	3 cut(s)	2105, 2171, 2442
Bbv12I	GWGCWC	2 cut(s)	1026, 2227
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	7 cut(s)	39, 42, 45, 48, 1153, 1893, 2030
BceAI	ACGGC	1 cut(s)	2492
BcgI	CGANNNNNNTGC	2 cut(s)	1264, 1298
BciT130I	CCWGG	2 cut(s)	1271, 2339
BciVI	GTATCC	1 cut(s)	2404
BclI	TGATCA	3 cut(s)	396, 1761, 2076
BcoDI	GTCTC	3 cut(s)	223, 1465, 2113
BfaI	CTAG	4 cut(s)	1055, 1317, 1475, 2000
BfmI	CTRYAG	2 cut(s)	1110, 2515
BfoI	RGCGCY	1 cut(s)	2281
BfrI	CTTAAG	2 cut(s)	2021, 2582
BfuAI	ACCTGC	2 cut(s)	1352, 2412
BfuI	GTATCC	1 cut(s)	2404
BglII	AGATCT	1 cut(s)	2191
Bme1390I	CCNGG	2 cut(s)	1271, 2339
Bme18I	GGWCC	1 cut(s)	1431
BmgBI	CACGTC	1 cut(s)	705
BmgT120I	GGNCC	4 cut(s)	42, 684, 1431, 1726
BmiI	GGNNCC	2 cut(s)	1104, 1419
BmrFI	CCNGG	2 cut(s)	1271, 2339
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	6 cut(s)	1284, 1576, 1599, 1681, 2026, 2594
BmuI	ACTGGG	1 cut(s)	725
BpiI	GAAGAC	3 cut(s)	2105, 2171, 2442
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	2119
BsaAI	YACGTR	1 cut(s)	1329
BsaBI	GATNNNNATC	2 cut(s)	2346, 2621
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	1653
BsaWI	WCCGGW	1 cut(s)	1840
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 1082, 1112, 1700, 1730
Bsc4I	CCNNNNNNNGG	2 cut(s)	681, 1276
Bse1I	ACTGG	5 cut(s)	110, 284, 720, 1426, 1707
Bse21I	CCTNAGG	1 cut(s)	482
Bse3DI	GCAATG	2 cut(s)	966, 1280
Bse8I	GATNNNNATC	2 cut(s)	2346, 2621
BseBI	CCWGG	2 cut(s)	1271, 2339
BseDI	CCNNGG	1 cut(s)	1653
BseGI	GGATG	8 cut(s)	144, 209, 742, 889, 1614, 1696, 2431, 2650
BseJI	GATNNNNATC	2 cut(s)	2346, 2621
BseLI	CCNNNNNNNGG	2 cut(s)	681, 1276
BseMI	GCAATG	2 cut(s)	966, 1280
BseMII	CTCAG	5 cut(s)	96, 146, 496, 630, 2601
BseNI	ACTGG	5 cut(s)	110, 284, 720, 1426, 1707
BseRI	GAGGAG	5 cut(s)	19, 211, 323, 335, 2498
BseSI	GKGCMC	1 cut(s)	2227
BseXI	GCAGC	7 cut(s)	39, 42, 45, 48, 1153, 1893, 2030
BseYI	CCCAGC	1 cut(s)	2333
BshFI	GGCC	7 cut(s)	44, 674, 685, 1350, 1728, 1794, 2132
BsiHKAI	GWGCWC	2 cut(s)	1026, 2227
BsiSI	CCGG	2 cut(s)	675, 1841
BslFI	GGGAC	2 cut(s)	1799, 2007
BslI	CCNNNNNNNGG	2 cut(s)	681, 1276
BsmAI	GTCTC	3 cut(s)	223, 1465, 2113
BsmFI	GGGAC	2 cut(s)	1799, 2007
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	7 cut(s)	44, 674, 685, 1350, 1728, 1794, 2132
Bsp1286I	GDGCHC	2 cut(s)	1026, 2227
BspANI	GGCC	7 cut(s)	44, 674, 685, 1350, 1728, 1794, 2132
BspCNI	CTCAG	5 cut(s)	97, 145, 495, 631, 2602
BspLI	GGNNCC	2 cut(s)	1104, 1419
BspMI	ACCTGC	2 cut(s)	1352, 2412
BspPI	GGATC	4 cut(s)	290, 376, 846, 2042
BspTI	CTTAAG	2 cut(s)	2021, 2582
BsrDI	GCAATG	2 cut(s)	966, 1280
BsrI	ACTGG	5 cut(s)	110, 284, 720, 1426, 1707
BssECI	CCNNGG	1 cut(s)	1653
BssNAI	GTATAC	1 cut(s)	807
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	1653
Bst1107I	GTATAC	1 cut(s)	807
Bst2UI	CCWGG	2 cut(s)	1271, 2339
Bst6I	CTCTTC	5 cut(s)	233, 331, 434, 1509, 1893
BstACI	GRCGYC	1 cut(s)	423
BstAFI	CTTAAG	2 cut(s)	2021, 2582
BstBAI	YACGTR	1 cut(s)	1329
BstC8I	GCNNGC	5 cut(s)	672, 1287, 1737, 2041, 2645
BstDEI	CTNAG	6 cut(s)	105, 132, 482, 639, 1290, 2610
BstF5I	GGATG	8 cut(s)	144, 209, 742, 889, 1614, 1696, 2431, 2650
BstH2I	RGCGCY	1 cut(s)	2281
BstHHI	GCGC	3 cut(s)	2028, 2094, 2280
BstMAI	GTCTC	3 cut(s)	223, 1465, 2113
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 36, 1163, 1286
BstNI	CCWGG	2 cut(s)	1271, 2339
BstNSI	RCATGY	3 cut(s)	1641, 1739, 2032
BstSCI	CCNGG	2 cut(s)	1269, 2337
BstSFI	CTRYAG	2 cut(s)	1110, 2515
BstSLI	GKGCMC	1 cut(s)	2227
BstSNI	TACGTA	1 cut(s)	1329
BstV1I	GCAGC	7 cut(s)	39, 42, 45, 48, 1153, 1893, 2030
BstV2I	GAAGAC	3 cut(s)	2105, 2171, 2442
BstX2I	RGATCY	2 cut(s)	381, 2191
BstYI	RGATCY	2 cut(s)	381, 2191
BstZ17I	GTATAC	1 cut(s)	807
Bsu36I	CCTNAGG	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	2404
BsuRI	GGCC	7 cut(s)	44, 674, 685, 1350, 1728, 1794, 2132
BtgZI	GCGATG	1 cut(s)	1289
BtrI	CACGTC	1 cut(s)	705
BtsCI	GGATG	8 cut(s)	144, 209, 742, 889, 1614, 1696, 2431, 2650
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	4 cut(s)	84, 751, 1351, 1433
BveI	ACCTGC	2 cut(s)	1352, 2412
Cac8I	GCNNGC	5 cut(s)	672, 1287, 1737, 2041, 2645
CfoI	GCGC	3 cut(s)	2028, 2094, 2280
Cfr13I	GGNCC	4 cut(s)	42, 684, 1431, 1726
CseI	GACGC	2 cut(s)	431, 1741
Csp6I	GTAC	2 cut(s)	1225, 1722
CviQI	GTAC	2 cut(s)	1225, 1722
DdeI	CTNAG	6 cut(s)	105, 132, 482, 639, 1290, 2610
DraI	TTTAAA	2 cut(s)	540, 858
EaeI	YGGCCR	2 cut(s)	1348, 1792
Eam1104I	CTCTTC	5 cut(s)	233, 331, 434, 1509, 1893
EarI	CTCTTC	5 cut(s)	233, 331, 434, 1509, 1893
EciI	GGCGGA	2 cut(s)	851, 2338
Eco105I	TACGTA	1 cut(s)	1329
Eco130I	CCWWGG	1 cut(s)	1653
Eco47I	GGWCC	1 cut(s)	1431
Eco57I	CTGAAG	2 cut(s)	1325, 1490
Eco81I	CCTNAGG	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	1269, 2337
EcoT14I	CCWWGG	1 cut(s)	1653
EcoT22I	ATGCAT	2 cut(s)	1129, 1876
ErhI	CCWWGG	1 cut(s)	1653
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	2 cut(s)	1799, 2007
FauNDI	CATATG	4 cut(s)	1770, 1981, 2242, 2310
FbaI	TGATCA	3 cut(s)	396, 1761, 2076
FblI	GTMKAC	1 cut(s)	806
FokI	GGATG	8 cut(s)	131, 196, 749, 896, 1621, 1703, 2438, 2637
FspBI	CTAG	4 cut(s)	1055, 1317, 1475, 2000
GlaI	GCGC	3 cut(s)	2027, 2093, 2279
GsaI	CCCAGC	1 cut(s)	2337
HaeII	RGCGCY	1 cut(s)	2281
HaeIII	GGCC	7 cut(s)	44, 674, 685, 1350, 1728, 1794, 2132
HapII	CCGG	2 cut(s)	675, 1841
HgaI	GACGC	2 cut(s)	431, 1741
HhaI	GCGC	3 cut(s)	2028, 2094, 2280
Hin1I	GRCGYC	1 cut(s)	423
Hin6I	GCGC	3 cut(s)	2026, 2092, 2278
HinP1I	GCGC	3 cut(s)	2026, 2092, 2278
HincII	GTYRAC	2 cut(s)	998, 1956
HindII	GTYRAC	2 cut(s)	998, 1956
HindIII	AAGCTT	3 cut(s)	2137, 2249, 2645
HinfI	GANTC	5 cut(s)	1193, 1499, 1949, 2003, 2447
HpaII	CCGG	2 cut(s)	675, 1841
HphI	GGTGA	5 cut(s)	295, 469, 1070, 1305, 1376
Hpy188I	TCNGA	8 cut(s)	106, 789, 816, 843, 955, 1305, 2611, 2658
Hpy188III	TCNNGA	4 cut(s)	1421, 1508, 2074, 2494
Hpy99I	CGWCG	2 cut(s)	122, 374
HpyCH4IV	ACGT	6 cut(s)	704, 908, 1223, 1328, 1845, 1987
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 36, 1163, 1286
HpyF3I	CTNAG	6 cut(s)	105, 132, 482, 639, 1290, 2610
HpySE526I	ACGT	6 cut(s)	704, 908, 1223, 1328, 1845, 1987
Hsp92I	GRCGYC	1 cut(s)	423
HspAI	GCGC	3 cut(s)	2026, 2092, 2278
Ksp22I	TGATCA	3 cut(s)	396, 1761, 2076
LmnI	GCTCC	3 cut(s)	1154, 2529, 2629
Lsp1109I	GCAGC	7 cut(s)	39, 42, 45, 48, 1153, 1893, 2030
LweI	GCATC	6 cut(s)	1284, 1576, 1599, 1681, 2026, 2594
MaeI	CTAG	4 cut(s)	1055, 1317, 1475, 2000
MaeII	ACGT	6 cut(s)	704, 908, 1223, 1328, 1845, 1987
MaeIII	GTNAC	4 cut(s)	1114, 1534, 1559, 1625
MfeI	CAATTG	2 cut(s)	160, 1170
MflI	RGATCY	2 cut(s)	381, 2191
MhlI	GDGCHC	2 cut(s)	1026, 2227
MlsI	TGGCCA	1 cut(s)	1350
MluNI	TGGCCA	1 cut(s)	1350
MlyI	GAGTC	1 cut(s)	2456
MmeI	TCCRAC	2 cut(s)	767, 1068
Mox20I	TGGCCA	1 cut(s)	1350
Mph1103I	ATGCAT	2 cut(s)	1129, 1876
MscI	TGGCCA	1 cut(s)	1350
MslI	CAYNNNNRTG	2 cut(s)	392, 2220
Msp20I	TGGCCA	1 cut(s)	1350
MspCI	CTTAAG	2 cut(s)	2021, 2582
MspI	CCGG	2 cut(s)	675, 1841
MspR9I	CCNGG	2 cut(s)	1271, 2339
MunI	CAATTG	2 cut(s)	160, 1170
Mva1269I	GAATGC	1 cut(s)	1009
MvaI	CCWGG	2 cut(s)	1271, 2339
MwoI	GCNNNNNNNGC	4 cut(s)	33, 36, 1163, 1286
NdeI	CATATG	4 cut(s)	1770, 1981, 2242, 2310
NlaIV	GGNNCC	2 cut(s)	1104, 1419
NmuCI	GTSAC	2 cut(s)	1114, 1534
NsiI	ATGCAT	2 cut(s)	1129, 1876
NspI	RCATGY	3 cut(s)	1641, 1739, 2032
PaeI	GCATGC	1 cut(s)	1739
PaqCI	CACCTGC	1 cut(s)	1352
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	1009
PfeI	GAWTC	4 cut(s)	1193, 1499, 1949, 2003
PflMI	CCANNNNNTGG	1 cut(s)	1276
PleI	GAGTC	1 cut(s)	2455
PpsI	GAGTC	1 cut(s)	2455
Ppu21I	YACGTR	1 cut(s)	1329
PshBI	ATTAAT	5 cut(s)	1235, 1340, 1581, 1974, 2361
PsiI	TTATAA	1 cut(s)	2255
Psp6I	CCWGG	2 cut(s)	1269, 2337
PspFI	CCCAGC	1 cut(s)	2333
PspGI	CCWGG	2 cut(s)	1269, 2337
PspN4I	GGNNCC	2 cut(s)	1104, 1419
PspPI	GGNCC	4 cut(s)	42, 684, 1431, 1726
PsuI	RGATCY	2 cut(s)	381, 2191
RsaI	GTAC	2 cut(s)	1226, 1723
RsaNI	GTAC	2 cut(s)	1225, 1722
RseI	CAYNNNNRTG	2 cut(s)	392, 2220
Sau96I	GGNCC	4 cut(s)	42, 684, 1431, 1726
SchI	GAGTC	1 cut(s)	2456
ScrFI	CCNGG	2 cut(s)	1271, 2339
SduI	GDGCHC	2 cut(s)	1026, 2227
SfaNI	GCATC	6 cut(s)	1284, 1576, 1599, 1681, 2026, 2594
SfcI	CTRYAG	2 cut(s)	1110, 2515
SinI	GGWCC	1 cut(s)	1431
SmiMI	CAYNNNNRTG	2 cut(s)	392, 2220
SmlI	CTYRAG	3 cut(s)	2021, 2134, 2582
SmoI	CTYRAG	3 cut(s)	2021, 2134, 2582
SnaBI	TACGTA	1 cut(s)	1329
SphI	GCATGC	1 cut(s)	1739
SspI	AATATT	1 cut(s)	1698
SspMI	CTAG	4 cut(s)	1055, 1317, 1475, 2000
StyD4I	CCNGG	2 cut(s)	1269, 2337
StyI	CCWWGG	1 cut(s)	1653
TaiI	ACGT	6 cut(s)	707, 911, 1226, 1331, 1848, 1990
TaqI	TCGA	4 cut(s)	117, 1219, 1299, 2493
TauI	GCSGC	3 cut(s)	685, 775, 2399
TfiI	GAWTC	4 cut(s)	1193, 1499, 1949, 2003
TscAI	CASTG	4 cut(s)	91, 751, 1358, 1433
TseFI	GTSAC	2 cut(s)	1114, 1534
TseI	GCWGC	7 cut(s)	27, 30, 33, 36, 1166, 1881, 2043
Tsp45I	GTSAC	2 cut(s)	1114, 1534
TspGWI	ACGGA	3 cut(s)	301, 358, 2516
TspRI	CASTG	4 cut(s)	91, 751, 1358, 1433
Van91I	CCANNNNNTGG	1 cut(s)	1276
Vha464I	CTTAAG	2 cut(s)	2021, 2582
VneI	GTGCAC	1 cut(s)	2223
VpaK11BI	GGWCC	1 cut(s)	1431
VspI	ATTAAT	5 cut(s)	1235, 1340, 1581, 1974, 2361
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	3 cut(s)	1641, 1739, 2032
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1433
XmiI	GTMKAC	1 cut(s)	806
XspI	CTAG	4 cut(s)	1055, 1317, 1475, 2000
Zsp2I	ATGCAT	2 cut(s)	1129, 1876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.