AT5G65560

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001743
Physical Location & Seq
Reverse (-)
26200014 .. 26203813
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65560.3

Sequence Viewer

Length: 2748 bp
ATGATCCGTCGAATACAACCACGGTGCAATTCGGGTTTGACTGGTTCAGTATCCGCCTTCGAAGTCCTGAAGAAGAAATTCTCGACGGATGTTACGGTTCCTTCTCCGGTCACTCGCCGGCAGTTTTGCTCCGTGTCTCCGCTACTTCGCAATCTTCCGGAGGAAGAATCTGATTCAATGAGTGTTCCACACCGTCTGCTATCAATTCTTTCTAAACCTAATTGGCATAAATCTCCGTCCTTGAAATCTATGGTTTCTGCGATAAGCCCTTCTCACGTCTCTTCACTATTCTCACTCGATCTAGATCCGAAAACAGCTCTTAATTTTTCTCACTGGATCTCACAGAATCCGAGATACAAGCACAGTGTATATTCCTATGCATCCCTTCTTACTCTTCTCATCAACAATGGATATGTGGGTGTTGTGTTTAAGATCAGGTTATTGATGATTAAGAGCTGTGATTCAGTGGGAGACGCTTTGTATGTTTTAGATTTGTGTAGGAAGATGAATAAAGACGAAAGATTTGAGCTTAAGTATAAGCTTATTATTGGGTGTTACAACACATTGTTGAATTCGTTGGCTAGATTTGGATTGGTCGATGAAATGAAGCAGGTTTATATGGAAATGTTGGAGGATAAGGTTTGTCCCAACATTTACACATATAATAAAATGGTTAATGGGTATTGCAAGCTGGGTAATGTGGAAGAGGCGAATCAGTATGTGAGTAAGATAGTTGAGGCTGGGTTGGATCCTGATTTTTTCACATATACGTCTTTGATTATGGGTTATTGTCAAAGGAAAGATTTAGATTCGGCTTTTAAGGTCTTCAATGAGATGCCTTTGAAGGGTTGCCGTAGAAATGAGGTTGCGTACACTCACCTTATACACGGTCTTTGTGTAGCGAGAAGGATTGATGAAGCGATGGACTTGTTTGTAAAAATGAAGGATGACGAATGTTTTCCAACAGTTCGTACTTATACAGTGCTCATAAAGTCTTTGTGTGGATCAGAACGGAAGTCTGAAGCTCTTAACTTGGTTAAGGAGATGGAAGAGACAGGCATTAAGCCGAATATTCACACTTATACGGTGCTAATTGATAGTTTATGCAGCCAATGTAAGTTCGAGAAAGCTAGAGAGTTGCTAGGTCAGATGCTAGAGAAAGGGTTGATGCCAAATGTAATCACTTACAATGCATTGATTAATGGGTATTGTAAGCGGGGGATGATTGAAGATGCTGTAGACGTTGTGGAGTTGATGGAATCACGTAAACTCAGCCCGAATACACGCACATACAATGAATTGATAAAGGGGTATTGTAAAAGTAATGTTCACAAAGCAATGGGAGTGCTTAATAAAATGCTGGAGCGTAAAGTGCTTCCAGATGTGGTCACTTACAATTCATTAATCGATGGGCAGTGTAGATCTGGTAATTTTGATAGTGCATATAGATTACTTAGTTTGATGAATGATAGAGGATTAGTTCCAGACCAGTGGACATATACTAGTATGATAGATTCTTTGTGTAAAAGCAAAAGAGTGGAAGAAGCCTGCGACCTGTTTGATTCTCTCGAGCAGAAAGGTGTAAATCCAAATGTGGTGATGTACACTGCATTGATTGATGGATACTGCAAGGCGGGTAAAGTAGACGAAGCTCATCTTATGCTTGAGAAAATGTTGAGTAAGAATTGCTTGCCAAATTCGTTGACTTTTAATGCCCTGATTCACGGGTTATGTGCCGATGGAAAATTGAAAGAAGCGACGTTGTTGGAGGAAAAAATGGTTAAGATTGGTCTACAGCCTACAGTTAGTACGGATACAATATTGATTCATAGATTGCTAAAAGACGGGGATTTTGATCATGCTTATAGTCGTTTTCAGCAAATGTTGTCCTCTGGAACAAAGCCCGATGCACATACTTACACAACATTTATTCAAACCTATTGTAGGGAAGGGAGACTACTAGACGCTGAGGATATGATGGCAAAGATGAGGGAAAATGGTGTTTCCCCAGATTTGTTCACTTATTCTTCTCTGATTAAAGGTTATGGGGATCTAGGGCAGACAAATTTTGCATTTGATGTCCTCAAGCGCATGCGTGATACTGGTTGTGAACCTTCTCAACATACGTTTTTGTCTCTGATCAAACATCTGTTAGAAATGAAATATGGAAAACAGAAAGGCAGTGAACCAGAACTCTGTGCAATGTCTAATATGATGGAGTTTGATACTGTTGTTGAGCTTCTTGAGAAAATGGTTGAACACAGTGTAACTCCCAACGCCAAATCCTATGAAAAACTGATACTAGGGATCTGTGAAGTTGGGAATCTCAGAGTTGCGGAAAAGGTGTTTGATCACATGCAACGAAACGAAGGAATATCTCCTAGTGAGTTGGTTTTCAATGCGCTTCTTAGCTGTTGCTGCAAGCTGAAAAAGCATAACGAAGCAGCAAAGGTTGTAGATGATATGATTTGTGTTGGTCACTTACCGCAACTAGAGTCTTGCAAAGTCTTGATTTGCGGGCTGTATAAAAAAGGAGAAAAAGAGAGAGGTACTTCGGTTTTCCAGAATTTGCTTCAATGTGGTTATTATGAGGATGAATTAGCTTGGAAGATCATCATTGATGGTGTGGGGAAGCAGGGACTTGTAGAGGCATTTTATGAACTATTCAACGTTATGGAGAAAAATGGCTGCAAGTTTAGCTCTCAGACATATTCACTGCTAATCGAAGGACCTCCTGATAGCACATAA

Protein Analysis

915

Amino Acids

103.54

Weight (kDa)

7.0

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 149 - 295 8.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 185 - 230 4.2e-11 PPR repeat family
PPR_1 PF12854 214 - 238 1.8e-07 PPR repeat
PPR_2 PF13041 216 - 265 4.9e-13 PPR repeat family
PPR_3 PF13812 243 - 285 9.7e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 248 - 279 3.2e-12 PPR repeat
PPR_2 PF13041 251 - 299 4.7e-15 PPR repeat family
PPR PF01535 254 - 284 1.8e-08 PPR repeat
PPR_long PF17177 269 - 362 1.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 282 - 315 5.9e-09 PPR repeat
PPR_3 PF13812 282 - 332 4.6e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 287 - 334 3.5e-15 PPR repeat family
PPR PF01535 289 - 319 3.2e-06 PPR repeat
PPR_1 PF12854 318 - 350 4.1e-06 PPR repeat
PPR_2 PF13041 330 - 369 3.4e-10 PPR repeat family
PPR_long PF17177 341 - 490 4.6e-13 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 345 - 405 2.8e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 353 - 384 1.1e-06 PPR repeat
PPR PF01535 360 - 389 8.4e-06 PPR repeat
PPR_2 PF13041 362 - 405 1.6e-12 PPR repeat family
PPR_1 PF12854 387 - 420 1.1e-13 PPR repeat
PPR_2 PF13041 391 - 440 2.7e-18 PPR repeat family
PPR PF01535 394 - 423 1.9e-08 PPR repeat
PPR_3 PF13812 416 - 469 6.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 424 - 453 1.6e-06 PPR repeat
PPR_2 PF13041 434 - 474 1.1e-09 PPR repeat family
TPR_24 PF23276 446 - 527 3.2e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 458 - 488 5.1e-11 PPR repeat
PPR_2 PF13041 460 - 509 7.6e-18 PPR repeat family
PPR PF01535 463 - 493 2.3e-06 PPR repeat
PPR_1 PF12854 491 - 522 3.2e-10 PPR repeat
PPR PF01535 499 - 528 1.2e-07 PPR repeat
PPR_2 PF13041 502 - 533 2.8e-06 PPR repeat family
PPR_long PF17177 510 - 623 4e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 519 - 575 6.3e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 526 - 558 1.4e-13 PPR repeat
PPR_2 PF13041 530 - 578 7.1e-18 PPR repeat family
PPR PF01535 533 - 563 4.5e-09 PPR repeat
PPR_1 PF12854 561 - 594 2.3e-09 PPR repeat
PPR_2 PF13041 569 - 613 7.5e-09 PPR repeat family
PPR_2 PF13041 606 - 649 2.6e-10 PPR repeat family
PPR_long PF17177 618 - 715 4.6e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 625 - 684 7.6e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 632 - 664 1.8e-08 PPR repeat
PPR_2 PF13041 639 - 682 2e-13 PPR repeat family
PPR_1 PF12854 666 - 699 3.2e-06 PPR repeat
PPR_2 PF13041 677 - 717 2.1e-06 PPR repeat family
PPR_long PF17177 743 - 904 1.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 747 - 807 1.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 763 - 808 1.4e-06 PPR repeat family
PPR_2 PF13041 865 - 910 1.8e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 601
AccI GTMKAC 3 cut(s) 1239, 1644, 1792
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 7 cut(s) 54, 140, 1216, 1634, 2336, 2486, 2517
AclI AACGTT 1 cut(s) 2670
AclWI GGATC 7 cut(s) 299, 344, 743, 756, 1012, 2058, 2315
AcsI RAATTY 5 cut(s) 77, 571, 1696, 2065, 2566
AcuI CTGAAG 2 cut(s) 89, 1041
AfaI GTAC 5 cut(s) 872, 973, 1604, 1810, 2551
AfiI CCNNNNNNNGG 2 cut(s) 845, 1944
AflII CTTAAG 1 cut(s) 530
AhlI ACTAGT 1 cut(s) 1502
AjiI CACGTC 1 cut(s) 277
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 6 cut(s) 141, 283, 465, 1046, 1948, 2139
AlwI GGATC 7 cut(s) 299, 344, 743, 756, 1012, 2058, 2315
Ama87I CYCGRG 1 cut(s) 1568
Aor13HI TCCGGA 1 cut(s) 157
ApeKI GCWGC 4 cut(s) 1107, 2418, 2444, 2688
ApoI RAATTY 5 cut(s) 77, 571, 1696, 2065, 2566
ArsI GACNNNNNNTTYG 4 cut(s) 506, 538, 1835, 1867
AseI ATTAAT 2 cut(s) 1200, 1403
Asp700I GAANNNNTTC 2 cut(s) 77, 957
AspLEI GCGC 2 cut(s) 2091, 2404
AspS9I GGNCC 1 cut(s) 2729
AsuHPI GGTGA 2 cut(s) 869, 1609
AsuII TTCGAA 1 cut(s) 60
AvaI CYCGRG 1 cut(s) 1568
AvaII GGWCC 1 cut(s) 2729
BaeI ACNNNNGTAYC 4 cut(s) 2217, 2250, 2541, 2574
BamHI GGATCC 1 cut(s) 748
BarI GAAGNNNNNNTAC 2 cut(s) 1941, 1973
BbsI GAAGAC 1 cut(s) 817
Bbv12I GWGCWC 1 cut(s) 987
BbvCI CCTCAGC 1 cut(s) 1968
BbvI GCAGC 4 cut(s) 1119, 2405, 2456, 2675
BccI CCATC 9 cut(s) 916, 1039, 1249, 1403, 1613, 1733, 1972, 2209, 2615
BceAI ACGGC 1 cut(s) 837
BciVI GTATCC 3 cut(s) 61, 1616, 1807
BclI TGATCA 3 cut(s) 1855, 2139, 2350
BcoDI GTCTC 6 cut(s) 141, 283, 465, 1046, 1948, 2139
BcuI ACTAGT 1 cut(s) 1502
BfmI CTRYAG 3 cut(s) 1236, 1793, 1800
BfrI CTTAAG 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 601
BfuI GTATCC 3 cut(s) 61, 1616, 1807
BglII AGATCT 1 cut(s) 1421
BisI GCNGC 4 cut(s) 1108, 2419, 2445, 2689
BlsI GCNGC 4 cut(s) 1109, 2420, 2446, 2690
Bme18I GGWCC 1 cut(s) 2729
BmeT110I CYCGRG 1 cut(s) 1568
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 2729
BmiI GGNNCC 2 cut(s) 99, 750
BmsI GCATC 6 cut(s) 389, 825, 1140, 1158, 1222, 1897
BpiI GAAGAC 1 cut(s) 817
BpmI CTGGAG 1 cut(s) 1382
Bpu10I CCTNAGC 1 cut(s) 1968
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 3 cut(s) 1685, 2069, 2264
Bsa29I ATCGAT 1 cut(s) 1407
BsaAI YACGTR 1 cut(s) 1265
BsaBI GATNNNNATC 2 cut(s) 303, 1854
BsaJI CCNNGG 1 cut(s) 20
BsaWI WCCGGW 2 cut(s) 106, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 845, 1944
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 4 cut(s) 46, 338, 1489, 2107
Bse3DI GCAATG 2 cut(s) 1344, 2208
Bse8I GATNNNNATC 2 cut(s) 303, 1854
BseAI TCCGGA 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 1407
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 5 cut(s) 94, 380, 952, 1227, 2599
BseJI GATNNNNATC 2 cut(s) 303, 1854
BseLI CCNNNNNNNGG 2 cut(s) 845, 1944
BseMI GCAATG 2 cut(s) 1344, 2208
BseMII CTCAG 4 cut(s) 1285, 1959, 2341, 2717
BseNI ACTGG 4 cut(s) 46, 338, 1489, 2107
BseXI GCAGC 4 cut(s) 1119, 2405, 2456, 2675
BseYI CCCAGC 2 cut(s) 691, 740
BshVI ATCGAT 1 cut(s) 1407
BsiHKAI GWGCWC 1 cut(s) 987
BsiHKCI CYCGRG 1 cut(s) 1568
BsiSI CCGG 3 cut(s) 107, 118, 158
BslFI GGGAC 2 cut(s) 630, 2652
BslI CCNNNNNNNGG 2 cut(s) 845, 1944
BsmAI GTCTC 6 cut(s) 141, 283, 465, 1046, 1948, 2139
BsmBI CGTCTC 2 cut(s) 283, 465
BsmFI GGGAC 2 cut(s) 630, 2652
BsoBI CYCGRG 1 cut(s) 1568
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 987
Bsp13I TCCGGA 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 1602
BspACI CCGC 7 cut(s) 54, 140, 1216, 1634, 2336, 2486, 2517
BspCNI CTCAG 4 cut(s) 1284, 1960, 2340, 2716
BspDI ATCGAT 1 cut(s) 1407
BspEI TCCGGA 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 99, 750
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 7 cut(s) 299, 344, 743, 756, 1012, 2058, 2315
BspT104I TTCGAA 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 530
BsrDI GCAATG 2 cut(s) 1344, 2208
BsrFI RCCGGY 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 1602
BsrI ACTGG 4 cut(s) 46, 338, 1489, 2107
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 20
Bst6I CTCTTC 4 cut(s) 286, 399, 699, 1044
BstAFI CTTAAG 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 1602
BstBAI YACGTR 1 cut(s) 1265
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 7 cut(s) 119, 689, 1549, 1691, 2093, 2423, 2519
BstDEI CTNAG 6 cut(s) 1271, 1454, 1968, 2327, 2408, 2703
BstDSI CCRYGG 1 cut(s) 20
BstENI CCTNNNNNAGG 1 cut(s) 1942
BstF5I GGATG 5 cut(s) 94, 380, 952, 1227, 2599
BstHHI GCGC 2 cut(s) 2091, 2404
BstMAI GTCTC 6 cut(s) 141, 283, 465, 1046, 1948, 2139
BstMWI GCNNNNNNNGC 4 cut(s) 1372, 2418, 2431, 2697
BstNSI RCATGY 2 cut(s) 2095, 2359
BstSFI CTRYAG 3 cut(s) 1236, 1793, 1800
BstV1I GCAGC 4 cut(s) 1119, 2405, 2456, 2675
BstV2I GAAGAC 1 cut(s) 817
BstX2I RGATCY 6 cut(s) 304, 336, 748, 1421, 2050, 2307
BstXI CCANNNNNNTGG 1 cut(s) 1491
BstYI RGATCY 6 cut(s) 304, 336, 748, 1421, 2050, 2307
Bsu15I ATCGAT 1 cut(s) 1407
BsuI GTATCC 3 cut(s) 61, 1616, 1807
BsuTUI ATCGAT 1 cut(s) 1407
BtgI CCRYGG 1 cut(s) 20
BtgZI GCGATG 1 cut(s) 935
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 5 cut(s) 94, 380, 952, 1227, 2599
BtsI GCAGTG 4 cut(s) 1421, 1605, 2188, 2714
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 7 cut(s) 119, 689, 1549, 1691, 2093, 2423, 2519
CfoI GCGC 2 cut(s) 2091, 2404
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 2729
ClaI ATCGAT 1 cut(s) 1407
CseI GACGC 2 cut(s) 482, 1973
Csp6I GTAC 5 cut(s) 871, 972, 1603, 1809, 2550
CviAII CATG 3 cut(s) 1859, 2092, 2356
CviQI GTAC 5 cut(s) 871, 972, 1603, 1809, 2550
DdeI CTNAG 6 cut(s) 1271, 1454, 1968, 2327, 2408, 2703
Eam1104I CTCTTC 4 cut(s) 286, 399, 699, 1044
EarI CTCTTC 4 cut(s) 286, 399, 699, 1044
EciI GGCGGA 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 2729
Eco57I CTGAAG 2 cut(s) 89, 1041
Eco88I CYCGRG 1 cut(s) 1568
EcoNI CCTNNNNNAGG 1 cut(s) 1942
EcoO109I RGGNCCY 1 cut(s) 2729
EcoRI GAATTC 1 cut(s) 571
EcoT22I ATGCAT 2 cut(s) 382, 1195
Esp3I CGTCTC 2 cut(s) 283, 465
FaeI CATG 3 cut(s) 1862, 2095, 2359
FalI AAGNNNNNCTT 4 cut(s) 1641, 1673, 1673, 1705
FaqI GGGAC 2 cut(s) 630, 2652
FatI CATG 3 cut(s) 1858, 2091, 2355
FauI CCCGC 3 cut(s) 1209, 1627, 2510
FbaI TGATCA 3 cut(s) 1855, 2139, 2350
FblI GTMKAC 3 cut(s) 1239, 1644, 1792
Fnu4HI GCNGC 4 cut(s) 1108, 2419, 2445, 2689
FokI GGATG 5 cut(s) 101, 367, 959, 1234, 2606
Fsp4HI GCNGC 4 cut(s) 1108, 2419, 2445, 2689
GlaI GCGC 2 cut(s) 2090, 2403
GluI GCNGC 4 cut(s) 1108, 2419, 2445, 2689
GsaI CCCAGC 2 cut(s) 695, 744
GsuI CTGGAG 1 cut(s) 1382
HapII CCGG 3 cut(s) 107, 118, 158
HgaI GACGC 2 cut(s) 482, 1973
HhaI GCGC 2 cut(s) 2091, 2404
Hin1II CATG 3 cut(s) 1862, 2095, 2359
Hin6I GCGC 2 cut(s) 2089, 2402
HinP1I GCGC 2 cut(s) 2089, 2402
HincII GTYRAC 1 cut(s) 1704
HindII GTYRAC 1 cut(s) 1704
HindIII AAGCTT 1 cut(s) 539
HpaII CCGG 3 cut(s) 107, 118, 158
HphI GGTGA 2 cut(s) 869, 1609
Hpy99I CGWCG 3 cut(s) 12, 88, 1762
HpyCH4IV ACGT 7 cut(s) 276, 770, 1242, 1264, 1760, 2126, 2670
HpyF10VI GCNNNNNNNGC 4 cut(s) 1372, 2418, 2431, 2697
HpyF3I CTNAG 6 cut(s) 1271, 1454, 1968, 2327, 2408, 2703
HpySE526I ACGT 7 cut(s) 276, 770, 1242, 1264, 1760, 2126, 2670
Hsp92II CATG 3 cut(s) 1862, 2095, 2359
HspAI GCGC 2 cut(s) 2089, 2402
Kpn2I TCCGGA 1 cut(s) 157
KroI GCCGGC 1 cut(s) 117
KroNI GCCGGC 1 cut(s) 119
Ksp22I TGATCA 3 cut(s) 1855, 2139, 2350
LmnI GCTCC 2 cut(s) 134, 1363
Lsp1109I GCAGC 4 cut(s) 1119, 2405, 2456, 2675
LweI GCATC 6 cut(s) 389, 825, 1140, 1158, 1222, 1897
MaeII ACGT 7 cut(s) 276, 770, 1242, 1264, 1760, 2126, 2670
MaeIII GTNAC 6 cut(s) 91, 109, 554, 1387, 2266, 2477
MflI RGATCY 6 cut(s) 304, 336, 748, 1421, 2050, 2307
MhlI GDGCHC 1 cut(s) 987
MlyI GAGTC 1 cut(s) 2504
MmeI TCCRAC 4 cut(s) 609, 726, 986, 1746
Mph1103I ATGCAT 2 cut(s) 382, 1195
MroI TCCGGA 1 cut(s) 157
MroNI GCCGGC 1 cut(s) 117
MroXI GAANNNNTTC 2 cut(s) 77, 957
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 3 cut(s) 107, 118, 158
MwoI GCNNNNNNNGC 4 cut(s) 1372, 2418, 2431, 2697
NaeI GCCGGC 1 cut(s) 119
NgoMIV GCCGGC 1 cut(s) 117
NlaIII CATG 3 cut(s) 1862, 2095, 2359
NlaIV GGNNCC 2 cut(s) 99, 750
NmuCI GTSAC 3 cut(s) 109, 1387, 2477
NsiI ATGCAT 2 cut(s) 382, 1195
NspI RCATGY 2 cut(s) 2095, 2359
NspV TTCGAA 1 cut(s) 60
PaeI GCATGC 1 cut(s) 2095
PaeR7I CTCGAG 1 cut(s) 1568
PdiI GCCGGC 1 cut(s) 119
PdmI GAANNNNTTC 2 cut(s) 77, 957
PkrI GCNGC 4 cut(s) 1109, 2420, 2446, 2690
PleI GAGTC 1 cut(s) 2503
PpsI GAGTC 1 cut(s) 2503
Ppu21I YACGTR 1 cut(s) 1265
PpuMI RGGWCCY 1 cut(s) 2729
PshBI ATTAAT 2 cut(s) 1200, 1403
Psp1406I AACGTT 1 cut(s) 2670
Psp5II RGGWCCY 1 cut(s) 2729
PspFI CCCAGC 2 cut(s) 691, 740
PspN4I GGNNCC 2 cut(s) 99, 750
PspPI GGNCC 1 cut(s) 2729
PspPPI RGGWCCY 1 cut(s) 2729
PsuI RGATCY 6 cut(s) 304, 336, 748, 1421, 2050, 2307
RsaI GTAC 5 cut(s) 872, 973, 1604, 1810, 2551
RsaNI GTAC 5 cut(s) 871, 972, 1603, 1809, 2550
SatI GCNGC 4 cut(s) 1108, 2419, 2445, 2689
Sau96I GGNCC 1 cut(s) 2729
SchI GAGTC 1 cut(s) 2504
SduI GDGCHC 1 cut(s) 987
SfaNI GCATC 6 cut(s) 389, 825, 1140, 1158, 1222, 1897
SfcI CTRYAG 3 cut(s) 1236, 1793, 1800
Sfr274I CTCGAG 1 cut(s) 1568
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 2729
SlaI CTCGAG 1 cut(s) 1568
SmlI CTYRAG 5 cut(s) 530, 1568, 1664, 2084, 2243
SmoI CTYRAG 5 cut(s) 530, 1568, 1664, 2084, 2243
SpeI ACTAGT 1 cut(s) 1502
SphI GCATGC 1 cut(s) 2095
SsiI CCGC 7 cut(s) 54, 140, 1216, 1634, 2336, 2486, 2517
SspI AATATT 2 cut(s) 1072, 1821
TaiI ACGT 7 cut(s) 279, 773, 1245, 1267, 1763, 2129, 2673
TaqI TCGA 9 cut(s) 10, 60, 83, 297, 597, 1122, 1407, 1569, 2724
TatI WGTACW 1 cut(s) 1602
TseFI GTSAC 3 cut(s) 109, 1387, 2477
TseI GCWGC 4 cut(s) 1107, 2418, 2444, 2688
Tsp45I GTSAC 3 cut(s) 109, 1387, 2477
TspGWI ACGGA 5 cut(s) 101, 121, 225, 1027, 1826
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 2729
VspI ATTAAT 2 cut(s) 1200, 1403
XagI CCTNNNNNAGG 1 cut(s) 1942
XapI RAATTY 5 cut(s) 77, 571, 1696, 2065, 2566
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 2 cut(s) 2095, 2359
XhoI CTCGAG 1 cut(s) 1568
XmiI GTMKAC 3 cut(s) 1239, 1644, 1792
XmnI GAANNNNTTC 2 cut(s) 77, 957
Zsp2I ATGCAT 2 cut(s) 382, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.