Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Reverse (-)

4874495 .. 4880856

Gene Structure 6362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04271.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGAGTCGACTCTCCACACTCCTCCGCACCATGAGAAGAAAACCCATTCCCCCAATTCTCCTCCTCCTCAATCCCCAACGCTCCTCCTTCTGCTCCTCCTCCGCTGCTTCTGAGCCACCACTGGACCACCTCACCTCGCAGCTCCTCTCCATCCTCTCCCAACCCAATTGGCAGAAACACCCCTCCCTGAAACCCCTAATCCCCTCCATATCCCCATCCCATGTCTCCTCCCTTTTCTCTCTCAATCTCAACTCTCTCTCCCCCCAAACCGCCCTCTCCTTCTTCCACTGGATCTCCCTCAAAAAGCAGCCCCACTTCATCCACACCGTCCACTCCCACTCCCATCTCCTCTCCCTCCTCCTCCCCTTCCCCTCCTTCCTCCCCGTCGCCCACACCCTCCGCATTTCCATGATCAACTCCTCCTCCTCCGCCTCCGACGCCCTCTTCGTCCTCCGCCGCCTCCGCTCCCTCGCCGCCCTCCACAACTTCAACCTCACTCTCAGGTCCTACAACTTCCTTCTCATGTCCTTGTCTAAGTTTTCGCTCCTAGACGACTTGAAATCTGTTTATTTAGACATGTTAAGGGATTCTGTCGCCCCGAATTTGCATACATTGAACACCATGGTCAATGCGTATTGTAAATTGGGGAATGTGGCTGAGGCTGAGCTGTATTTCACCAAGATAGCCGCGGCCGGTCTGCGGCCGGATACTTTTAGCTATACGTCTTTGATACTGGGGCATTGTAGGAATAAGGATGTGGACAGTGCTCATAGGGTGTTTAGGGTAATGCCGAAGAAGGGTTGTCCTAGAAATGAGGTTTCGTACACTATTTTGATACATGGGTTGTGTGAGGCGGATCGGATTGAGGAGGCTTTTGAGTTGTTTTGTCAGATGGGGGAGGATAAGTGTGAACCGACTGTTCGCACTTATACGGTTCTTGTTTCTGCATTTTGTAGATTGGGGAAGAAGTCAGAAGCAATGAAGCTATTTGAGGAGATGGCGGAGAAGGGTTGTCAACCGAATGCGCATACTTATACCGTGCTCATTGATAGTATGTGCAAGGAATATAAAGTGGATGAGGCTAGAAAGTTGCTGGACAAGATGTTGAAGAAACGGTTGGTTCCTACTGTTGTCACGTACAACGCATTGATTGATGGGTATTGCAAGGAGGGAAAGGTTGAGGCTGCAATGGATATTAAGGCTTTGATGGAATCGAATAAGTGTAGTCCAAATGCTCGAACTTACAATGAATTGATTTTCGGGTTTTGTAAAAGGAAAGATGTAAACCAGGCAATGGCGTTGCTCGCTAAGATGCTCAACCTGAAGCTCGAACCTAGTGTGATTACGTATAACTCATTGATAAATGGCCACTGTAAAGCAGGCGATTTCAACTGTGCTTATAGGTTGGTTAATTTGATGAAGGATAGTGGTTTGGTTCCTGACCAGTGGACCTATAGTGTTCTCATAGACAGTCTTTGTAAGGGTGGGAGACTAGAAGAAGCTTACGCCCAGCTTGATTCTCTTAAGGACAAAGGCGTGAAGCCAAATGAAGTGATATTTACTGCTTTGATTGATGGGTACTGCAAGGCAGGGAAAACCAATGATGCCCATGCTTTGTTTGATAGGATGCTTACAGAGGGCTGTGTGCCGAACACATGCACTTACAATACCTTGGTAGATGCATTGTGCAAAGAAGGAAAATTGCAGGATGCAATATTACTGGTGGAGAAGATGTTAAGCACGGGCCAGATGCATACACCATACACTTATTCAATACTAATCAAATATATGCTGAAAGAAGGGGACTTCAGCCATGCTCATAGATTGTTCAACGAGATGGTTTGTTCTGGTAGTCAACCAGATGTATTTATTTACACTTCATTCATTCATGCATATTGCAGTATAGGGGATATAGAGGAGGCAGAGAAGCTGATGGTTAAGATGAGTGAAGAAGGAATTAGAGCAGATTCGTTGACATACACATTATTGATTAACACATATGGCCGTCTGGGACTACTAGATTCTGCATTTGGTGTTCTTAAGCGCATGTTTGATGCTTGCTGTGAACCTTCTCACTATACATATTCTTTCCTGATCAAACATCTTTCGCTATCGAAGACAAATGCCAATATAGTGAGACTTGATTTGGCCTCAAACTTCACTGATATCTCTGATGTATGGAAGACAATGGATTATCAAATTGCTTTAGAGCTGTTTGAGAAGATGGTTGTACATGGATGTGCACCCAATGGCAATACATATGAAAAGCTTATAACAGGTCTTTGCAAAGAGGGGCGCTTGGAAGTAGCGCAGAGGCTACATGTTCATATGAAAGATAGGCAGATTTCGCCCAGTCAGGATATTTACCATTCTCTTATTAATTGTTGCTGTCAGTTGCAAGTATATGGAGAGGCGGCATTCCTGCTGGATACAATGATTGAGGTTGGTTATTTACCAGCATTAGAGTCTTCCAAGTTGCTTGTATGTGGGCTATTTAATGAAGATAATATCGAGAAGGCAAAAGCTGTTTTCTGTAGTTTGCTCAGATGTGGGTATAATTTTGATGAAGTAGCTTGGAAAGTTCTCCATGATGGTTTACTTAAGAGGGGTCTTGTCAATAGATGCTCTGAGTTGATAACCATCATGGAGCAGATGGGTTGCAAGCTTCATCCTCAGACATATTCAATGCTGATTGACGGAATTGATGGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

905

Amino Acids

101.65

Weight (kDa)

7.8

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	169 - 214	4.6e-06	PPR repeat family
PPR_1	PF12854	232 - 263	1.7e-08	PPR repeat
PPR_2	PF13041	235 - 283	3e-16	PPR repeat family
PPR	PF01535	238 - 268	8.2e-06	PPR repeat
PPR_1	PF12854	266 - 298	2.7e-11	PPR repeat
PPR_2	PF13041	271 - 319	2e-16	PPR repeat family
PPR	PF01535	273 - 303	4.5e-07	PPR repeat
PPR_1	PF12854	303 - 333	5e-10	PPR repeat
PPR_3	PF13812	307 - 351	1.6e-08	Pentatricopeptide repeat domain
PPR	PF01535	309 - 338	2.6e-08	PPR repeat
PPR_2	PF13041	313 - 354	2.3e-14	PPR repeat family
PPR_long	PF17177	325 - 417	1e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	328 - 387	3.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	336 - 368	3.1e-11	PPR repeat
PPR	PF01535	344 - 372	8.1e-06	PPR repeat
PPR_2	PF13041	344 - 381	5.5e-09	PPR repeat family
PPR_3	PF13812	363 - 419	1.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	372 - 399	1.1e-10	PPR repeat
PPR_2	PF13041	375 - 424	2.8e-17	PPR repeat family
PPR	PF01535	378 - 408	3.1e-07	PPR repeat
PPR_long	PF17177	403 - 487	7.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	408 - 438	1.7e-08	PPR repeat
PPR_2	PF13041	414 - 459	4.1e-13	PPR repeat family
PPR_3	PF13812	434 - 490	2.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	443 - 474	1.3e-11	PPR repeat
PPR_2	PF13041	445 - 494	1.2e-17	PPR repeat family
TPR_24	PF23276	446 - 542	3.1e-07	Fungal tetratrico peptide repeats
PPR	PF01535	448 - 478	4.7e-07	PPR repeat
PPR_1	PF12854	477 - 503	1.5e-08	PPR repeat
PPR_long	PF17177	499 - 602	8.3e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	505 - 612	7.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	506 - 562	2.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	511 - 543	4e-12	PPR repeat
PPR_2	PF13041	515 - 564	2.5e-17	PPR repeat family
PPR	PF01535	518 - 548	6.1e-08	PPR repeat
PPR_1	PF12854	547 - 578	6.6e-13	PPR repeat
PPR_2	PF13041	550 - 595	9e-12	PPR repeat family
PPR	PF01535	554 - 580	8.8e-06	PPR repeat
PPR_2	PF13041	589 - 623	1.1e-07	PPR repeat family
PPR_long	PF17177	589 - 698	6.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	608 - 668	5.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	617 - 649	1e-08	PPR repeat
PPR_2	PF13041	620 - 667	1e-12	PPR repeat family
PPR	PF01535	624 - 653	2.2e-06	PPR repeat
PPR_3	PF13812	644 - 700	5.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	659 - 702	1.5e-07	PPR repeat family
PPR_2	PF13041	731 - 763	1.9e-06	PPR repeat family
PPR_3	PF13812	738 - 796	3.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	746 - 778	1.3e-06	PPR repeat
PPR_2	PF13041	753 - 798	2.8e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2273
Acc16I	TGCGCA	1 cut(s)	1026
AccB7I	CCANNNNNTGG	1 cut(s)	1294
AccBSI	CCGCTC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	7
AccII	CGCG	1 cut(s)	689
AclWI	GGATC	2 cut(s)	299, 864
AcoI	YGGCCR	4 cut(s)	690, 701, 1366, 2002
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	2 cut(s)	1343, 1792
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	4 cut(s)	824, 1139, 1580, 2232
AfiI	CCNNNNNNNGG	3 cut(s)	699, 797, 1294
AflII	CTTAAG	3 cut(s)	1523, 2039, 2600
AflIII	ACRYGT	2 cut(s)	576, 2320
AgsI	TTSAA	8 cut(s)	490, 559, 616, 1108, 1390, 1773, 1831, 2685
AjnI	CCWGG	1 cut(s)	1287
AjuI	GAANNNNNNNTTGG	2 cut(s)	1100, 1132
Alw21I	GWGCWC	3 cut(s)	769, 1044, 2245
Alw26I	GTCTC	3 cut(s)	229, 1483, 2131
Alw44I	GTGCAC	1 cut(s)	2241
AlwI	GGATC	2 cut(s)	299, 864
AoxI	GGCC	6 cut(s)	690, 701, 1366, 1744, 2002, 2148
ApaLI	GTGCAC	1 cut(s)	2241
ApeKI	GCWGC	4 cut(s)	104, 139, 307, 1184
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AseI	ATTAAT	1 cut(s)	2379
AspLEI	GCGC	4 cut(s)	1027, 2046, 2298, 2311
AspS9I	GGNCC	4 cut(s)	124, 504, 1449, 1744
AsuHPI	GGTGA	2 cut(s)	124, 667
AvaII	GGWCC	3 cut(s)	124, 504, 1449
BaeGI	GKGCMC	1 cut(s)	2245
BaeI	ACNNNNGTAYC	2 cut(s)	827, 860
BalI	TGGCCA	1 cut(s)	1368
BbsI	GAAGAC	3 cut(s)	2123, 2189, 2460
Bbv12I	GWGCWC	3 cut(s)	769, 1044, 2245
BbvCI	CCTCAGC	1 cut(s)	657
BbvI	GCAGC	4 cut(s)	91, 151, 319, 1171
BceAI	ACGGC	1 cut(s)	1989
BciT130I	CCWGG	1 cut(s)	1289
BciVI	GTATCC	2 cut(s)	700, 2422
BclI	TGATCA	2 cut(s)	411, 2094
BcoDI	GTCTC	3 cut(s)	229, 1483, 2131
BfaI	CTAG	6 cut(s)	548, 807, 1083, 1335, 1493, 2018
BfmI	CTRYAG	2 cut(s)	1453, 2533
BfoI	RGCGCY	1 cut(s)	2299
BfrI	CTTAAG	3 cut(s)	1523, 2039, 2600
BfuI	GTATCC	2 cut(s)	700, 2422
BlpI	GCTNAGC	1 cut(s)	663
Bme1390I	CCNGG	1 cut(s)	1289
Bme18I	GGWCC	3 cut(s)	124, 504, 1449
BmgT120I	GGNCC	4 cut(s)	124, 504, 1449, 1744
BmiI	GGNNCC	2 cut(s)	1122, 1437
BmrFI	CCNGG	1 cut(s)	1289
BmrI	ACTGGG	2 cut(s)	743, 2346
BmsI	GCATC	8 cut(s)	1302, 1594, 1617, 1669, 1699, 1740, 2044, 2612
BmuI	ACTGGG	2 cut(s)	743, 2346
BpiI	GAAGAC	3 cut(s)	2123, 2189, 2460
Bpu10I	CCTNAGC	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	663
BsaAI	YACGTR	2 cut(s)	1137, 1347
BsaBI	GATNNNNATC	1 cut(s)	2639
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	621, 687, 1671
Bsc4I	CCNNNNNNNGG	3 cut(s)	699, 797, 1294
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	6 cut(s)	126, 293, 738, 1444, 1725, 2352
Bse3DI	GCAATG	3 cut(s)	984, 1194, 1299
Bse8I	GATNNNNATC	1 cut(s)	2639
BseBI	CCWGG	1 cut(s)	1289
BseDI	CCNNGG	3 cut(s)	621, 687, 1671
BseGI	GGATG	9 cut(s)	150, 215, 318, 760, 1081, 1632, 1714, 2243, 2668
BseJI	GATNNNNATC	1 cut(s)	2639
BseLI	CCNNNNNNNGG	3 cut(s)	699, 797, 1294
BseMI	GCAATG	3 cut(s)	984, 1194, 1299
BseMII	CTCAG	7 cut(s)	102, 514, 648, 654, 2557, 2619, 2687
BseNI	ACTGG	6 cut(s)	126, 293, 738, 1444, 1725, 2352
BseSI	GKGCMC	1 cut(s)	2245
BseX3I	CGGCCG	2 cut(s)	690, 701
BseXI	GCAGC	4 cut(s)	91, 151, 319, 1171
BseYI	CCCAGC	1 cut(s)	1509
Bsh1236I	CGCG	1 cut(s)	689
Bsh1285I	CGRYCG	2 cut(s)	693, 704
BshFI	GGCC	6 cut(s)	692, 703, 1368, 1746, 2004, 2150
BsiEI	CGRYCG	2 cut(s)	693, 704
BsiHKAI	GWGCWC	3 cut(s)	769, 1044, 2245
BsiSI	CCGG	2 cut(s)	693, 704
BslFI	GGGAC	2 cut(s)	1817, 2025
BslI	CCNNNNNNNGG	3 cut(s)	699, 797, 1294
BsmAI	GTCTC	3 cut(s)	229, 1483, 2131
BsmFI	GGGAC	2 cut(s)	1817, 2025
BsmI	GAATGC	2 cut(s)	1027, 2417
BsnI	GGCC	6 cut(s)	692, 703, 1368, 1746, 2004, 2150
Bsp1286I	GDGCHC	3 cut(s)	769, 1044, 2245
Bsp1407I	TGTACA	1 cut(s)	2230
Bsp143I	GATC	4 cut(s)	291, 411, 856, 2094
Bsp1720I	GCTNAGC	1 cut(s)	663
Bsp19I	CCATGG	1 cut(s)	621
BspANI	GGCC	6 cut(s)	692, 703, 1368, 1746, 2004, 2150
BspCNI	CTCAG	7 cut(s)	103, 513, 649, 655, 2556, 2620, 2686
BspFNI	CGCG	1 cut(s)	689
BspLI	GGNNCC	2 cut(s)	1122, 1437
BspPI	GGATC	2 cut(s)	299, 864
BspTI	CTTAAG	3 cut(s)	1523, 2039, 2600
BsrBI	CCGCTC	1 cut(s)	465
BsrDI	GCAATG	3 cut(s)	984, 1194, 1299
BsrFI	RCCGGY	1 cut(s)	692
BsrGI	TGTACA	1 cut(s)	2230
BsrI	ACTGG	6 cut(s)	126, 293, 738, 1444, 1725, 2352
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	3 cut(s)	621, 687, 1671
BssMI	GATC	4 cut(s)	291, 411, 856, 2094
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	621, 1671
Bst2UI	CCWGG	1 cut(s)	1289
Bst6I	CTCTTC	1 cut(s)	449
BstACI	GRCGYC	1 cut(s)	438
BstAFI	CTTAAG	3 cut(s)	1523, 2039, 2600
BstAUI	TGTACA	1 cut(s)	2230
BstBAI	YACGTR	2 cut(s)	1137, 1347
BstC8I	GCNNGC	4 cut(s)	1305, 1381, 2059, 2663
BstDEI	CTNAG	9 cut(s)	111, 500, 534, 657, 663, 1308, 2543, 2628, 2673
BstDSI	CCRYGG	2 cut(s)	621, 687
BstF5I	GGATG	9 cut(s)	150, 215, 318, 760, 1081, 1632, 1714, 2243, 2668
BstFNI	CGCG	1 cut(s)	689
BstH2I	RGCGCY	1 cut(s)	2299
BstHHI	GCGC	4 cut(s)	1027, 2046, 2298, 2311
BstKTI	GATC	4 cut(s)	294, 414, 859, 2097
BstMAI	GTCTC	3 cut(s)	229, 1483, 2131
BstMBI	GATC	4 cut(s)	291, 411, 856, 2094
BstMCI	CGRYCG	2 cut(s)	693, 704
BstMWI	GCNNNNNNNGC	4 cut(s)	437, 462, 1304, 2347
BstNI	CCWGG	1 cut(s)	1289
BstNSI	RCATGY	4 cut(s)	580, 1659, 2050, 2324
BstSCI	CCNGG	1 cut(s)	1287
BstSFI	CTRYAG	2 cut(s)	1453, 2533
BstSLI	GKGCMC	1 cut(s)	2245
BstSNI	TACGTA	1 cut(s)	1347
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	4 cut(s)	91, 151, 319, 1171
BstV2I	GAAGAC	3 cut(s)	2123, 2189, 2460
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BstZI	CGGCCG	2 cut(s)	690, 701
BsuI	GTATCC	2 cut(s)	700, 2422
BsuRI	GGCC	6 cut(s)	692, 703, 1368, 1746, 2004, 2150
BtgI	CCRYGG	2 cut(s)	621, 687
BtsCI	GGATG	9 cut(s)	150, 215, 318, 760, 1081, 1632, 1714, 2243, 2668
BtsIMutI	CAGTG	6 cut(s)	119, 286, 769, 1369, 1451, 2160
Cac8I	GCNNGC	4 cut(s)	1305, 1381, 2059, 2663
CfoI	GCGC	4 cut(s)	1027, 2046, 2298, 2311
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	4 cut(s)	124, 504, 1449, 1744
Cfr42I	CCGCGG	1 cut(s)	690
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	4 cut(s)	823, 1138, 1579, 2231
CviQI	GTAC	4 cut(s)	823, 1138, 1579, 2231
DdeI	CTNAG	9 cut(s)	111, 500, 534, 657, 663, 1308, 2543, 2628, 2673
DpnI	GATC	4 cut(s)	293, 413, 858, 2096
DpnII	GATC	4 cut(s)	291, 411, 856, 2094
EaeI	YGGCCR	4 cut(s)	690, 701, 1366, 2002
EagI	CGGCCG	2 cut(s)	690, 701
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
EciI	GGCGGA	4 cut(s)	418, 443, 869, 1016
EclXI	CGGCCG	2 cut(s)	690, 701
Eco105I	TACGTA	1 cut(s)	1347
Eco130I	CCWWGG	2 cut(s)	621, 1671
Eco32I	GATATC	1 cut(s)	2167
Eco47I	GGWCC	3 cut(s)	124, 504, 1449
Eco52I	CGGCCG	2 cut(s)	690, 701
Eco57I	CTGAAG	2 cut(s)	1343, 1792
EcoO109I	RGGNCCY	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	1287
EcoRV	GATATC	1 cut(s)	2167
EcoT14I	CCWWGG	2 cut(s)	621, 1671
EcoT22I	ATGCAT	3 cut(s)	1684, 1755, 1894
ErhI	CCWWGG	2 cut(s)	621, 1671
FaqI	GGGAC	2 cut(s)	1817, 2025
FauNDI	CATATG	3 cut(s)	1999, 2260, 2328
FbaI	TGATCA	2 cut(s)	411, 2094
FblI	GTMKAC	1 cut(s)	7
FokI	GGATG	9 cut(s)	137, 202, 305, 767, 1088, 1639, 1721, 2250, 2655
FspAI	RTGCGCAY	1 cut(s)	1026
FspBI	CTAG	6 cut(s)	548, 807, 1083, 1335, 1493, 2018
FspI	TGCGCA	1 cut(s)	1026
GlaI	GCGC	4 cut(s)	1026, 2045, 2297, 2310
GsaI	CCCAGC	1 cut(s)	1513
HaeII	RGCGCY	1 cut(s)	2299
HaeIII	GGCC	6 cut(s)	692, 703, 1368, 1746, 2004, 2150
HapII	CCGG	2 cut(s)	693, 704
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	4 cut(s)	1027, 2046, 2298, 2311
Hin1I	GRCGYC	1 cut(s)	438
Hin6I	GCGC	4 cut(s)	1025, 2044, 2296, 2309
HinP1I	GCGC	4 cut(s)	1025, 2044, 2296, 2309
HincII	GTYRAC	4 cut(s)	8, 1016, 1856, 1974
HindII	GTYRAC	4 cut(s)	8, 1016, 1856, 1974
HindIII	AAGCTT	3 cut(s)	1500, 2267, 2663
HinfI	GANTC	8 cut(s)	4, 9, 587, 1211, 1517, 1967, 2021, 2465
HpaII	CCGG	2 cut(s)	693, 704
HphI	GGTGA	2 cut(s)	124, 667
Hpy188I	TCNGA	9 cut(s)	112, 436, 861, 891, 973, 2173, 2546, 2629, 2676
Hpy188III	TCNNGA	4 cut(s)	1439, 2092, 2357, 2512
Hpy99I	CGWCG	2 cut(s)	389, 440
HpyCH4IV	ACGT	3 cut(s)	722, 1136, 1346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	437, 462, 1304, 2347
HpyF3I	CTNAG	9 cut(s)	111, 500, 534, 657, 663, 1308, 2543, 2628, 2673
HpySE526I	ACGT	3 cut(s)	722, 1136, 1346
Hsp92I	GRCGYC	1 cut(s)	438
HspAI	GCGC	4 cut(s)	1025, 2044, 2296, 2309
Ksp22I	TGATCA	2 cut(s)	411, 2094
KspI	CCGCGG	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	291, 411, 856, 2094
LmnI	GCTCC	6 cut(s)	86, 98, 147, 470, 549, 2647
Lsp1109I	GCAGC	4 cut(s)	91, 151, 319, 1171
LweI	GCATC	8 cut(s)	1302, 1594, 1617, 1669, 1699, 1740, 2044, 2612
MaeI	CTAG	6 cut(s)	548, 807, 1083, 1335, 1493, 2018
MaeII	ACGT	3 cut(s)	722, 1136, 1346
MaeIII	GTNAC	1 cut(s)	1132
MalI	GATC	4 cut(s)	293, 413, 858, 2096
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	4 cut(s)	291, 411, 856, 2094
MfeI	CAATTG	1 cut(s)	166
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	3 cut(s)	769, 1044, 2245
MlsI	TGGCCA	1 cut(s)	1368
MluNI	TGGCCA	1 cut(s)	1368
MlyI	GAGTC	3 cut(s)	3, 13, 2474
MmeI	TCCRAC	1 cut(s)	459
Mox20I	TGGCCA	1 cut(s)	1368
Mph1103I	ATGCAT	3 cut(s)	1684, 1755, 1894
MscI	TGGCCA	1 cut(s)	1368
MslI	CAYNNNNRTG	2 cut(s)	407, 2238
Msp20I	TGGCCA	1 cut(s)	1368
MspA1I	CMGCKG	2 cut(s)	104, 689
MspCI	CTTAAG	3 cut(s)	1523, 2039, 2600
MspI	CCGG	2 cut(s)	693, 704
MspR9I	CCNGG	1 cut(s)	1289
MunI	CAATTG	1 cut(s)	166
Mva1269I	GAATGC	2 cut(s)	1027, 2417
MvaI	CCWGG	1 cut(s)	1289
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	4 cut(s)	437, 462, 1304, 2347
NcoI	CCATGG	1 cut(s)	621
NdeI	CATATG	3 cut(s)	1999, 2260, 2328
NdeII	GATC	4 cut(s)	291, 411, 856, 2094
NlaIV	GGNNCC	2 cut(s)	1122, 1437
NmuCI	GTSAC	1 cut(s)	1132
NsbI	TGCGCA	1 cut(s)	1026
NsiI	ATGCAT	3 cut(s)	1684, 1755, 1894
NspI	RCATGY	4 cut(s)	580, 1659, 2050, 2324
PciI	ACATGT	2 cut(s)	576, 2320
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PctI	GAATGC	2 cut(s)	1027, 2417
PfeI	GAWTC	5 cut(s)	587, 1211, 1517, 1967, 2021
PflMI	CCANNNNNTGG	1 cut(s)	1294
PleI	GAGTC	3 cut(s)	3, 12, 2473
PpsI	GAGTC	3 cut(s)	3, 12, 2473
Ppu21I	YACGTR	2 cut(s)	1137, 1347
PpuMI	RGGWCCY	1 cut(s)	504
PscI	ACATGT	2 cut(s)	576, 2320
PshBI	ATTAAT	1 cut(s)	2379
PsiI	TTATAA	1 cut(s)	2273
Psp5II	RGGWCCY	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	1287
PspFI	CCCAGC	1 cut(s)	1509
PspGI	CCWGG	1 cut(s)	1287
PspN4I	GGNNCC	2 cut(s)	1122, 1437
PspPI	GGNCC	4 cut(s)	124, 504, 1449, 1744
PspPPI	RGGWCCY	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	4 cut(s)	824, 1139, 1580, 2232
RsaNI	GTAC	4 cut(s)	823, 1138, 1579, 2231
RseI	CAYNNNNRTG	2 cut(s)	407, 2238
SacII	CCGCGG	1 cut(s)	690
SalI	GTCGAC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	291, 411, 856, 2094
Sau96I	GGNCC	4 cut(s)	124, 504, 1449, 1744
SchI	GAGTC	3 cut(s)	3, 13, 2474
ScrFI	CCNGG	1 cut(s)	1289
SduI	GDGCHC	3 cut(s)	769, 1044, 2245
SfaNI	GCATC	8 cut(s)	1302, 1594, 1617, 1669, 1699, 1740, 2044, 2612
SfcI	CTRYAG	2 cut(s)	1453, 2533
Sfr303I	CCGCGG	1 cut(s)	690
SgrBI	CCGCGG	1 cut(s)	690
SinI	GGWCC	3 cut(s)	124, 504, 1449
SmiMI	CAYNNNNRTG	2 cut(s)	407, 2238
SmlI	CTYRAG	3 cut(s)	1523, 2039, 2600
SmoI	CTYRAG	3 cut(s)	1523, 2039, 2600
SnaBI	TACGTA	1 cut(s)	1347
SspI	AATATT	1 cut(s)	1716
SspMI	CTAG	6 cut(s)	548, 807, 1083, 1335, 1493, 2018
StyD4I	CCNGG	1 cut(s)	1287
StyI	CCWWGG	2 cut(s)	621, 1671
TaiI	ACGT	3 cut(s)	725, 1139, 1349
TaqI	TCGA	6 cut(s)	7, 1214, 1237, 1329, 2114, 2511
TatI	WGTACW	1 cut(s)	2230
TauI	GCSGC	6 cut(s)	459, 476, 689, 692, 703, 2417
TfiI	GAWTC	5 cut(s)	587, 1211, 1517, 1967, 2021
TscAI	CASTG	6 cut(s)	126, 293, 769, 1376, 1451, 2167
TseFI	GTSAC	1 cut(s)	1132
TseI	GCWGC	4 cut(s)	104, 139, 307, 1184
Tsp45I	GTSAC	1 cut(s)	1132
TspGWI	ACGGA	1 cut(s)	2712
TspRI	CASTG	6 cut(s)	126, 293, 769, 1376, 1451, 2167
Van91I	CCANNNNNTGG	1 cut(s)	1294
Vha464I	CTTAAG	3 cut(s)	1523, 2039, 2600
VneI	GTGCAC	1 cut(s)	2241
VpaK11BI	GGWCC	3 cut(s)	124, 504, 1449
VspI	ATTAAT	1 cut(s)	2379
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	4 cut(s)	580, 1659, 2050, 2324
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	6 cut(s)	548, 807, 1083, 1335, 1493, 2018
Zsp2I	ATGCAT	3 cut(s)	1684, 1755, 1894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.