Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Reverse (-)

11847024 .. 11850105

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG077100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2700 bp

ATGAGGAGAAAACCCATTCTCCCAAGCAGCAGCAGCAGCAGCAGGGCCTTGTTTCTCCACCTCAATTCCAAACGCTTCTTCTCCTTCACTGCTTCCGCTTCCGCTTCCGAGCCAGTCCTCGACGATCTCCCCTCTCAGCTCTTGTCCATCCTCTCCCAACCCAATTGGCAAAGACACCCCTCCCTCAAACCCCTAATTCCCTCCATATCCCCCTCCCATGTCTCCTCCCTCTTCTCCCTCAACCACCACCTCCCCCCCCAAACCGCCCTCGCCTTCTTCAATTGGATCGCCCTCAAACCCAACTTCACCCACACCGTCCACTCCCACTCTTCTCTCCTCACCCTTCTCCTCCCCAACCCTTCCCTCCTCTCCGTCGCCGAAAAGATCCGCATTTCCATGATCAAGTCCTCCACCTGCCCCCCTGACGCCCTCTTCGTCCTCCACCATCTCCGCTACTTGAACAAGACCCACTTCAAGCTCACCCTCAGGTCATACAACTTTCTTCTCATGTCATTGTCCAAGTTTTCGCTGTTTGATGATTTAAAAACTGTGTATATGGAGATGCTGGAGGATAAGGTTTCCCCCAATTTGCATACATTTAACACTATGGTCAATGCTTATTGTAAATTGGGGAATTTGGCTGAGGCAGAGGTGTATTTCAGTAAGATAGGGCAGGCCGGATTGCGGCCCGATACTTTTAGCTACACGTCTTTGATACTGGGGCATTGTAGGAATAAGGATGTGGACAGTGCTTATAGGGTGTTTAGGGTAATGCCGCAGAAAGAGTGTCGGAGAAATGAGGTTTCGTATACGAATCTGATACATGGGTTGTGTGAGGCGGATCGGATTGGTGAGGCTTTTAAGTTGTTTTCGCAGATGGGGGAGGATGATTGTCAGCCGACTGTCCGCACGTTTACAGTTCTGATTTCTGCATTTTGTAGATTGGGGAAGAAGTCGGAAGCAATGAAGTTATTTAGAGAGATGAGGGAAAAGGGTTGTGAACCAAATGTTCATACTTATACCGTGCTCATTGATAGTATGTGCAAGGAGAATAAGCTAGGTGAGGCTAGGAAGTTGCTGAATGAGATGTTGGAGAAACGGTTGGTTCCTACTGTTGTCACATACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCAGTTGAGGCTGCAATTGATATTAAGGCTTTGATGGAATCAAATAAATGTTGTCCAAATGCTCGAACGTACAATGAATTGATTTTTGGGTTTTGTAAAAGGAAAGATGTAAACCAGGCGATGGCATTGCTCGCTAAGATGCTCGATCTGAAGCTCTCACCTAGTGTGATTACGTATAACTCATTAATACATGGCCACTGTAAAGCAGGTGATTTAGACTGTGCTTATAGGTTGCTTGATTTGATGAAGGACAGTGGTTTGGTTCCTGACCAGTGGACCTATAGTGTTTTTATAGACAGTCTTTGTAAGAGTGGGAGACTAGAAGAAGCTCATGCCCTGTTTGATTCTCTTAAGGAGAAAGGCGTAAAGTCAAATGAAGTGACATTTACTGCTTTGATTGATGGTTACTGCAAGGTGGGGAAAATTAATGATGCCCATTCCTTGTTTGATAGGATGCTTACAGAGGGCTGTAACCCGAACACATGCACTTACAATACCTTGGTAGATGGATTGTGCAAAGAAGGAAAATTGCAGGATGCAATATTACTGGTGGAGAAGATGTTAAGTACGGGCCTGACGCATGCACCACATACTTATTCTATACTGATCAAACATATGCTGAAAGAAGGGGACTTCGGCCATGCTCATAGACTGTTCAACCAGATGGTTTGTTCTGGTAGTAAACCAGACGTATTTATTTACACTTCGTTTATTCATGCATATTGCAGCATAGGGGATATAGAAGAGGCAGAAAAGCTGATGGTTAAGATGAGTGAAGAAGGAATTAGAGCAGATTCGTTGACGTACACATTATTGATTAATACATATGGACGTATGGGACTACTAGATTCTGCATTTGGTGTTCTTAAGCGCATGTTTGGTGCTTGCTGCGATCCTTCTCACTATACCTATTCTTTCCTGATCAAACATCTTTTGCGCTCGAAGACGAATGACGATATAGTGAGACTTGATTTGGCCTCAAGCTTCATTGATATTGCTGATGTATGGAAGACAATGGATTATCAAAATGCTTTAGATCTGTTTGACAAGATGGCTGAACATGGCTGTGCACCCAATGGCAACACATATGAAAAGCTTATAATAGGTCTTTGCAAAGAGGGGCGCTTGGAAGTAGCCCAGAGGCTATATGTTCATATGAGAGATAGGCGGATTTCTCCCAGCCAGGATATTTATCATTCTCTTATTAATTGTTGCTGTCAGTTGCAAGTGTATGGAGAGGCGGCAAACCTGCTGGATACGATGATTGAGGATGGTTATTTACCAACATTAGAGTCTTCCAAGTTGCTTGTATGTGGGCTATTCATTGAGGAGAATATTGAGAAGGCAAAAGCCGTTTTCTGTAGTTTGCTCCGTTGTGAGTATAACTTTGATGAAGTAGCTTGGAAAGTTCTCCATGATGGTTTACTTAAGAGGGGTCTTGTCAATAGATGCTCTGAGTTGATAACCATCATGGAGCAGATGGGTTGCAAGCTTCATCCTCAGACATATTCAATGCTGATTGAGGGAATTGATGGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

899

Amino Acids

101.48

Weight (kDa)

7.15

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	164 - 209	3e-07	PPR repeat family
PPR_1	PF12854	193 - 220	3.2e-07	PPR repeat
PPR_2	PF13041	195 - 244	7.7e-11	PPR repeat family
PPR_1	PF12854	227 - 258	2.9e-09	PPR repeat
PPR_2	PF13041	230 - 278	1.8e-13	PPR repeat family
PPR_long	PF17177	247 - 322	4.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	261 - 293	1.1e-08	PPR repeat
PPR_2	PF13041	266 - 314	1.7e-15	PPR repeat family
PPR_3	PF13812	288 - 346	6.9e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	297 - 329	1.9e-10	PPR repeat
PPR	PF01535	304 - 333	3.4e-09	PPR repeat
PPR_2	PF13041	304 - 349	2.1e-17	PPR repeat family
PPR_long	PF17177	320 - 409	2.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	323 - 382	2.4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	331 - 363	2.5e-12	PPR repeat
PPR	PF01535	339 - 367	2.7e-06	PPR repeat
PPR_2	PF13041	340 - 376	6.9e-09	PPR repeat family
PPR_3	PF13812	358 - 414	2.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	367 - 394	2.4e-09	PPR repeat
PPR_2	PF13041	370 - 419	7.6e-16	PPR repeat family
PPR	PF01535	373 - 403	7.5e-06	PPR repeat
PPR_long	PF17177	398 - 482	3e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	403 - 433	1.1e-08	PPR repeat
PPR_2	PF13041	405 - 453	4.5e-13	PPR repeat family
PPR_3	PF13812	429 - 485	7.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	438 - 469	3e-13	PPR repeat
PPR_2	PF13041	440 - 489	6.8e-17	PPR repeat family
PPR	PF01535	443 - 473	4.9e-08	PPR repeat
PPR_1	PF12854	472 - 502	2.4e-09	PPR repeat
PPR	PF01535	479 - 508	7.2e-07	PPR repeat
PPR_2	PF13041	483 - 524	1.6e-12	PPR repeat family
PPR_long	PF17177	493 - 597	3.9e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	496 - 607	6.1e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	499 - 554	6.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	506 - 538	3.6e-11	PPR repeat
PPR_2	PF13041	511 - 559	2.2e-18	PPR repeat family
PPR	PF01535	513 - 543	9.3e-09	PPR repeat
PPR_1	PF12854	542 - 573	1e-13	PPR repeat
PPR_2	PF13041	545 - 591	3.9e-11	PPR repeat family
PPR	PF01535	549 - 577	3.6e-06	PPR repeat
PPR_2	PF13041	584 - 621	1.1e-07	PPR repeat family
PPR_3	PF13812	603 - 664	2.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	612 - 644	5e-09	PPR repeat
PPR_2	PF13041	615 - 662	1e-12	PPR repeat family
PPR	PF01535	619 - 648	2.1e-06	PPR repeat
PPR_3	PF13812	639 - 695	2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	655 - 697	4.3e-06	PPR repeat family
PPR_long	PF17177	719 - 853	5.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	726 - 758	3e-06	PPR repeat family
PPR_3	PF13812	733 - 791	2.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	748 - 793	1.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2258
AarI	CACCTGC	2 cut(s)	422, 1355
Acc36I	ACCTGC	3 cut(s)	422, 1355, 2415
AccB7I	CCANNNNNTGG	1 cut(s)	1279
AccI	GTMKAC	1 cut(s)	809
AclWI	GGATC	4 cut(s)	293, 379, 849, 2045
AcoI	YGGCCR	2 cut(s)	1351, 1795
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	1328
AcyI	GRCGYC	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	1322
AfaI	GTAC	3 cut(s)	1229, 1726, 1964
AfiI	CCNNNNNNNGG	2 cut(s)	684, 1279
AflII	CTTAAG	3 cut(s)	1508, 2024, 2585
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	5 cut(s)	280, 460, 475, 1816, 2670
AjiI	CACGTC	1 cut(s)	708
AjnI	CCWGG	2 cut(s)	1272, 2340
AjuI	GAANNNNNNNTTGG	6 cut(s)	62, 94, 1073, 1105, 1227, 1259
Alw21I	GWGCWC	2 cut(s)	1029, 2230
Alw26I	GTCTC	3 cut(s)	226, 1468, 2116
Alw44I	GTGCAC	1 cut(s)	2226
AlwI	GGATC	4 cut(s)	293, 379, 849, 2045
AoxI	GGCC	7 cut(s)	45, 675, 686, 1351, 1729, 1795, 2133
ApaLI	GTGCAC	1 cut(s)	2226
ApeKI	GCWGC	8 cut(s)	27, 30, 33, 36, 39, 1169, 1884, 2046
ApoI	RAATTY	1 cut(s)	634
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AseI	ATTAAT	4 cut(s)	1343, 1584, 1977, 2364
AspLEI	GCGC	3 cut(s)	2031, 2097, 2283
AspS9I	GGNCC	4 cut(s)	45, 687, 1434, 1729
AsuHPI	GGTGA	7 cut(s)	298, 331, 472, 863, 1073, 1308, 1379
AvaII	GGWCC	1 cut(s)	1434
AxyI	CCTNAGG	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	2230
BaeI	ACNNNNGTAYC	2 cut(s)	812, 845
BalI	TGGCCA	1 cut(s)	1353
BbsI	GAAGAC	3 cut(s)	2108, 2174, 2445
Bbv12I	GWGCWC	2 cut(s)	1029, 2230
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	8 cut(s)	39, 42, 45, 48, 51, 1156, 1896, 2033
BceAI	ACGGC	1 cut(s)	2495
BcgI	CGANNNNNNTGC	2 cut(s)	1267, 1301
BciT130I	CCWGG	2 cut(s)	1274, 2342
BciVI	GTATCC	1 cut(s)	2407
BclI	TGATCA	3 cut(s)	399, 1764, 2079
BcoDI	GTCTC	3 cut(s)	226, 1468, 2116
BfaI	CTAG	5 cut(s)	1058, 1068, 1320, 1478, 2003
BfmI	CTRYAG	2 cut(s)	1438, 2518
BfoI	RGCGCY	1 cut(s)	2284
BfrI	CTTAAG	3 cut(s)	1508, 2024, 2585
BfuAI	ACCTGC	3 cut(s)	422, 1355, 2415
BfuI	GTATCC	1 cut(s)	2407
BglII	AGATCT	1 cut(s)	2194
Bme1390I	CCNGG	2 cut(s)	1274, 2342
Bme18I	GGWCC	1 cut(s)	1434
BmgBI	CACGTC	1 cut(s)	708
BmgT120I	GGNCC	4 cut(s)	45, 687, 1434, 1729
BmiI	GGNNCC	2 cut(s)	1107, 1422
BmrFI	CCNGG	2 cut(s)	1274, 2342
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	6 cut(s)	552, 1287, 1579, 1602, 1684, 2597
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	3 cut(s)	2108, 2174, 2445
BpmI	CTGGAG	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	2122
BsaAI	YACGTR	1 cut(s)	1332
BsaBI	GATNNNNATC	2 cut(s)	2349, 2624
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	1656
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 1085, 1115, 1703, 1733
Bsc4I	CCNNNNNNNGG	2 cut(s)	684, 1279
Bse1I	ACTGG	4 cut(s)	113, 723, 1429, 1710
Bse21I	CCTNAGG	1 cut(s)	485
Bse3DI	GCAATG	2 cut(s)	969, 1283
Bse8I	GATNNNNATC	2 cut(s)	2349, 2624
BseBI	CCWGG	2 cut(s)	1274, 2342
BseDI	CCNNGG	1 cut(s)	1656
BseGI	GGATG	7 cut(s)	147, 745, 892, 1617, 1699, 2434, 2653
BseJI	GATNNNNATC	2 cut(s)	2349, 2624
BseLI	CCNNNNNNNGG	2 cut(s)	684, 1279
BseMI	GCAATG	2 cut(s)	969, 1283
BseMII	CTCAG	5 cut(s)	149, 499, 633, 2604, 2672
BseNI	ACTGG	4 cut(s)	113, 723, 1429, 1710
BseRI	GAGGAG	6 cut(s)	19, 214, 326, 338, 356, 2501
BseSI	GKGCMC	1 cut(s)	2230
BseXI	GCAGC	8 cut(s)	39, 42, 45, 48, 51, 1156, 1896, 2033
BseYI	CCCAGC	1 cut(s)	2336
BshFI	GGCC	7 cut(s)	47, 677, 688, 1353, 1731, 1797, 2135
BsiHKAI	GWGCWC	2 cut(s)	1029, 2230
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	2 cut(s)	1802, 2010
BslI	CCNNNNNNNGG	2 cut(s)	684, 1279
BsmAI	GTCTC	3 cut(s)	226, 1468, 2116
BsmFI	GGGAC	2 cut(s)	1802, 2010
BsnI	GGCC	7 cut(s)	47, 677, 688, 1353, 1731, 1797, 2135
Bsp1286I	GDGCHC	2 cut(s)	1029, 2230
BspANI	GGCC	7 cut(s)	47, 677, 688, 1353, 1731, 1797, 2135
BspCNI	CTCAG	5 cut(s)	148, 498, 634, 2605, 2671
BspLI	GGNNCC	2 cut(s)	1107, 1422
BspMI	ACCTGC	3 cut(s)	422, 1355, 2415
BspPI	GGATC	4 cut(s)	293, 379, 849, 2045
BspTI	CTTAAG	3 cut(s)	1508, 2024, 2585
BsrDI	GCAATG	2 cut(s)	969, 1283
BsrI	ACTGG	4 cut(s)	113, 723, 1429, 1710
BssECI	CCNNGG	1 cut(s)	1656
BssNAI	GTATAC	1 cut(s)	810
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	1656
Bst1107I	GTATAC	1 cut(s)	810
Bst2UI	CCWGG	2 cut(s)	1274, 2342
Bst6I	CTCTTC	4 cut(s)	236, 334, 437, 1896
BstACI	GRCGYC	1 cut(s)	426
BstAFI	CTTAAG	3 cut(s)	1508, 2024, 2585
BstBAI	YACGTR	1 cut(s)	1332
BstC8I	GCNNGC	5 cut(s)	675, 1290, 1740, 2044, 2648
BstDEI	CTNAG	6 cut(s)	135, 485, 642, 1293, 2613, 2658
BstF5I	GGATG	7 cut(s)	147, 745, 892, 1617, 1699, 2434, 2653
BstH2I	RGCGCY	1 cut(s)	2284
BstHHI	GCGC	3 cut(s)	2031, 2097, 2283
BstMAI	GTCTC	3 cut(s)	226, 1468, 2116
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 36, 39, 1166, 1289
BstNI	CCWGG	2 cut(s)	1274, 2342
BstNSI	RCATGY	3 cut(s)	1644, 1742, 2035
BstSCI	CCNGG	2 cut(s)	1272, 2340
BstSFI	CTRYAG	2 cut(s)	1438, 2518
BstSLI	GKGCMC	1 cut(s)	2230
BstSNI	TACGTA	1 cut(s)	1332
BstV1I	GCAGC	8 cut(s)	39, 42, 45, 48, 51, 1156, 1896, 2033
BstV2I	GAAGAC	3 cut(s)	2108, 2174, 2445
BstX2I	RGATCY	2 cut(s)	384, 2194
BstYI	RGATCY	2 cut(s)	384, 2194
BstZ17I	GTATAC	1 cut(s)	810
Bsu36I	CCTNAGG	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	2407
BsuRI	GGCC	7 cut(s)	47, 677, 688, 1353, 1731, 1797, 2135
BtgZI	GCGATG	1 cut(s)	1292
BtrI	CACGTC	1 cut(s)	708
BtsCI	GGATG	7 cut(s)	147, 745, 892, 1617, 1699, 2434, 2653
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	5 cut(s)	87, 754, 1354, 1417, 1436
BveI	ACCTGC	3 cut(s)	422, 1355, 2415
Cac8I	GCNNGC	5 cut(s)	675, 1290, 1740, 2044, 2648
CfoI	GCGC	3 cut(s)	2031, 2097, 2283
Cfr13I	GGNCC	4 cut(s)	45, 687, 1434, 1729
CseI	GACGC	2 cut(s)	434, 1744
Csp6I	GTAC	3 cut(s)	1228, 1725, 1963
CviQI	GTAC	3 cut(s)	1228, 1725, 1963
DdeI	CTNAG	6 cut(s)	135, 485, 642, 1293, 2613, 2658
DraI	TTTAAA	1 cut(s)	543
DraIII	CACNNNGTG	1 cut(s)	1322
EaeI	YGGCCR	2 cut(s)	1351, 1795
Eam1104I	CTCTTC	4 cut(s)	236, 334, 437, 1896
EarI	CTCTTC	4 cut(s)	236, 334, 437, 1896
EciI	GGCGGA	2 cut(s)	854, 2341
Eco105I	TACGTA	1 cut(s)	1332
Eco130I	CCWWGG	1 cut(s)	1656
Eco47I	GGWCC	1 cut(s)	1434
Eco57I	CTGAAG	1 cut(s)	1328
Eco81I	CCTNAGG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	45
EcoRII	CCWGG	2 cut(s)	1272, 2340
EcoT14I	CCWWGG	1 cut(s)	1656
EcoT22I	ATGCAT	2 cut(s)	1132, 1879
ErhI	CCWWGG	1 cut(s)	1656
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	2 cut(s)	1802, 2010
FauNDI	CATATG	4 cut(s)	1773, 1984, 2245, 2313
FbaI	TGATCA	3 cut(s)	399, 1764, 2079
FblI	GTMKAC	1 cut(s)	809
FokI	GGATG	7 cut(s)	134, 752, 899, 1624, 1706, 2441, 2640
FspBI	CTAG	5 cut(s)	1058, 1068, 1320, 1478, 2003
GlaI	GCGC	3 cut(s)	2030, 2096, 2282
GsaI	CCCAGC	1 cut(s)	2340
GsuI	CTGGAG	1 cut(s)	587
HaeII	RGCGCY	1 cut(s)	2284
HaeIII	GGCC	7 cut(s)	47, 677, 688, 1353, 1731, 1797, 2135
HapII	CCGG	1 cut(s)	678
HgaI	GACGC	2 cut(s)	434, 1744
HhaI	GCGC	3 cut(s)	2031, 2097, 2283
Hin1I	GRCGYC	1 cut(s)	426
Hin6I	GCGC	3 cut(s)	2029, 2095, 2281
HinP1I	GCGC	3 cut(s)	2029, 2095, 2281
HincII	GTYRAC	1 cut(s)	1959
HindII	GTYRAC	1 cut(s)	1959
HindIII	AAGCTT	3 cut(s)	2140, 2252, 2648
HinfI	GANTC	6 cut(s)	814, 1196, 1502, 1952, 2006, 2450
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	7 cut(s)	298, 331, 472, 863, 1073, 1308, 1379
Hpy188I	TCNGA	9 cut(s)	109, 792, 819, 846, 924, 958, 1308, 2614, 2661
Hpy188III	TCNNGA	2 cut(s)	1424, 2077
Hpy99I	CGWCG	2 cut(s)	125, 377
HpyCH4IV	ACGT	7 cut(s)	707, 911, 1226, 1331, 1848, 1961, 1990
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 36, 39, 1166, 1289
HpyF3I	CTNAG	6 cut(s)	135, 485, 642, 1293, 2613, 2658
HpySE526I	ACGT	7 cut(s)	707, 911, 1226, 1331, 1848, 1961, 1990
Hsp92I	GRCGYC	1 cut(s)	426
HspAI	GCGC	3 cut(s)	2029, 2095, 2281
Ksp22I	TGATCA	3 cut(s)	399, 1764, 2079
LmnI	GCTCC	3 cut(s)	1157, 2532, 2632
Lsp1109I	GCAGC	8 cut(s)	39, 42, 45, 48, 51, 1156, 1896, 2033
LweI	GCATC	6 cut(s)	552, 1287, 1579, 1602, 1684, 2597
MaeI	CTAG	5 cut(s)	1058, 1068, 1320, 1478, 2003
MaeII	ACGT	7 cut(s)	707, 911, 1226, 1331, 1848, 1961, 1990
MaeIII	GTNAC	4 cut(s)	1117, 1537, 1562, 1628
MfeI	CAATTG	3 cut(s)	163, 280, 1173
MflI	RGATCY	2 cut(s)	384, 2194
MhlI	GDGCHC	2 cut(s)	1029, 2230
MlsI	TGGCCA	1 cut(s)	1353
MluNI	TGGCCA	1 cut(s)	1353
MlyI	GAGTC	1 cut(s)	2459
MmeI	TCCRAC	3 cut(s)	770, 936, 1071
Mox20I	TGGCCA	1 cut(s)	1353
Mph1103I	ATGCAT	2 cut(s)	1132, 1879
MscI	TGGCCA	1 cut(s)	1353
MslI	CAYNNNNRTG	2 cut(s)	395, 2223
Msp20I	TGGCCA	1 cut(s)	1353
MspCI	CTTAAG	3 cut(s)	1508, 2024, 2585
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	2 cut(s)	1274, 2342
MunI	CAATTG	3 cut(s)	163, 280, 1173
MvaI	CCWGG	2 cut(s)	1274, 2342
MwoI	GCNNNNNNNGC	5 cut(s)	33, 36, 39, 1166, 1289
NdeI	CATATG	4 cut(s)	1773, 1984, 2245, 2313
NlaIV	GGNNCC	2 cut(s)	1107, 1422
NmuCI	GTSAC	2 cut(s)	1117, 1537
NsiI	ATGCAT	2 cut(s)	1132, 1879
NspI	RCATGY	3 cut(s)	1644, 1742, 2035
PaeI	GCATGC	1 cut(s)	1742
PaqCI	CACCTGC	2 cut(s)	422, 1355
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PfeI	GAWTC	5 cut(s)	814, 1196, 1502, 1952, 2006
PflMI	CCANNNNNTGG	1 cut(s)	1279
PleI	GAGTC	1 cut(s)	2458
PpsI	GAGTC	1 cut(s)	2458
Ppu21I	YACGTR	1 cut(s)	1332
PshBI	ATTAAT	4 cut(s)	1343, 1584, 1977, 2364
PsiI	TTATAA	1 cut(s)	2258
Psp6I	CCWGG	2 cut(s)	1272, 2340
PspFI	CCCAGC	1 cut(s)	2336
PspGI	CCWGG	2 cut(s)	1272, 2340
PspN4I	GGNNCC	2 cut(s)	1107, 1422
PspPI	GGNCC	4 cut(s)	45, 687, 1434, 1729
PsuI	RGATCY	2 cut(s)	384, 2194
RsaI	GTAC	3 cut(s)	1229, 1726, 1964
RsaNI	GTAC	3 cut(s)	1228, 1725, 1963
RseI	CAYNNNNRTG	2 cut(s)	395, 2223
Sau96I	GGNCC	4 cut(s)	45, 687, 1434, 1729
SchI	GAGTC	1 cut(s)	2459
ScrFI	CCNGG	2 cut(s)	1274, 2342
SduI	GDGCHC	2 cut(s)	1029, 2230
SfaNI	GCATC	6 cut(s)	552, 1287, 1579, 1602, 1684, 2597
SfcI	CTRYAG	2 cut(s)	1438, 2518
SinI	GGWCC	1 cut(s)	1434
SmiMI	CAYNNNNRTG	2 cut(s)	395, 2223
SmlI	CTYRAG	4 cut(s)	1508, 2024, 2137, 2585
SmoI	CTYRAG	4 cut(s)	1508, 2024, 2137, 2585
SnaBI	TACGTA	1 cut(s)	1332
SphI	GCATGC	1 cut(s)	1742
SspI	AATATT	2 cut(s)	1701, 2494
SspMI	CTAG	5 cut(s)	1058, 1068, 1320, 1478, 2003
StyD4I	CCNGG	2 cut(s)	1272, 2340
StyI	CCWWGG	1 cut(s)	1656
TaiI	ACGT	7 cut(s)	710, 914, 1229, 1334, 1851, 1964, 1993
TaqI	TCGA	4 cut(s)	120, 1222, 1302, 2099
TauI	GCSGC	3 cut(s)	688, 778, 2402
TfiI	GAWTC	5 cut(s)	814, 1196, 1502, 1952, 2006
TscAI	CASTG	5 cut(s)	94, 754, 1361, 1417, 1436
TseFI	GTSAC	2 cut(s)	1117, 1537
TseI	GCWGC	8 cut(s)	27, 30, 33, 36, 39, 1169, 1884, 2046
Tsp45I	GTSAC	2 cut(s)	1117, 1537
TspGWI	ACGGA	2 cut(s)	361, 2519
TspRI	CASTG	5 cut(s)	94, 754, 1361, 1417, 1436
Van91I	CCANNNNNTGG	1 cut(s)	1279
Vha464I	CTTAAG	3 cut(s)	1508, 2024, 2585
VneI	GTGCAC	1 cut(s)	2226
VpaK11BI	GGWCC	1 cut(s)	1434
VspI	ATTAAT	4 cut(s)	1343, 1584, 1977, 2364
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	3 cut(s)	1644, 1742, 2035
XmiI	GTMKAC	1 cut(s)	809
XspI	CTAG	5 cut(s)	1058, 1068, 1320, 1478, 2003
Zsp2I	ATGCAT	2 cut(s)	1132, 1879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.