Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Reverse (-)

6089238 .. 6092041

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G006310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGATTAGAAAACCGACGGCCACGATCACCCCATTCAAGCACCAACTCTTGTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCTCCACCACCGCCGGACAACCTCCCTTCCCAGCTCTTCGCCATCCTCTCCCGCCCAAACTGGCAAAAACACCCCTCCCTCAAATCCCTTATCCCCTCCATATCCCCCTCCCACGTCTCCTCCCTCTTCTCCCTCAACCCGGTCCACCCCCGAACCGCCCTCCACTTCTTCACCTGGCTCGCCCACAACCCCAAATTCCACCACAACGTCCACTCCCACTCCTCCCTCCTCGCCCTCCTCCTCCGCAACGGCTTCTCCGGCCCCGCCGAGAGGGTCCGCATTTCGATGATTAAGGCTTCAATTTCTAACGCCGACGCCCGGTTCGTGCTGGACCGGTTGCGCCGGTTCAAGCACGAATTCGGGTTCAAGATCACCCTCAGGTGTTATGATTCTCTTTTATTTTCAATTTCCAAGTTTTTAGGGATTGAAGATTTGAAAATGTTGTATTTGGAAATGTTGGAGGATAAAATCTCCCCTGATTTGCATATATATAATATCATGGTGAATGCTTATTGTAGATTAGGCAATGTAGTTGAGGCTGGTGTCTATGTTAGTAAGATCGTTGAGGCGGGTTTCAAGCCGAATACGAACACTTACAATTCTTTGATAGTGGGGCATTGTAGGAATAAGGATGTGGATAGTGCTTACAGGACTTTTAAGGTGATCCCCAACAAGGGTTGTGCAAGAGATGTGGTTTCGTATAATGTATTGATACACGGGCTCTGTGAGGCTGGCAGGAGTAACGAGGCCTTTGAGTTGTACTCTAATATGGAGAAGGATGAGTGTTTACCAGATGCGCCAACATATAATGTTCTTATTCATGCATTGTGTAGAGGGGGGAGGAGATTGGAAGGGATGAGTTTGTTTAAGGAGATGAAAGAGAAGGGTTGTGAGCCTAGTGTAAATACTTATAATGTGCTCATTACTAGCCTGTGTGACGAAAATAAGCTTCAGTATGCTAGGAAGGTTCTAGACCTGATGTCGGGGAAAGGGTTGGTTCCGGATGTTGTCACGTACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCGGTTGAGGCTGCGTTTGGGATTCTGGGTTTGATGGAATCTACTAAGTGTCGTCCAAATGCTCGCACGTTTACTGAATTGATTCATGGCTTTTGTAAAAGGAATAATGTGCACCAGGCAATGGCGCTTCTTGATAGGATGCTTGAACGGAAGCTCTCACCAGACCAGATTACATATAATTCGTTGATCAATGGGCAGTGTAAAGCAGGTCATGTAGATAGTGCTTATAGGTTGCTTAGTTTGATGAAACATAGTGGTTTAGTTCCTGACCGGTGGACTTACAGTGTCATCATCGACAGTCTCTGTAAGTTGGGGAGATTAAAAGAAGCTCAAGCCCTCTTTGATTCTCTCAAGGACAAAGGCATCAAGTCTAATGAAGTGATATTTACGGCTTTACTTGATGGTTACTGCAAGCTTGGGAAAATCGATGATGCTCGCACTTTATTTAATAGAATGCTTGCTGAGGGTTGTTTCCCAAACTCGTATACTTACTGTGCCTTCCTAGGTGGGCTGTGCAAAGAGGGAAAAACAAAGGAAGCATTATCAGTGGTGGAACAGATGCTAAGTAGTGGTGTGAAGCCTACAGTCCACACTTGTAACGTTCTAATTAACCATGTGCTGAAAGAAGGGGATTTCAACCATGCTCAGAGGTTTTTGAATGAATTTGTTTCTCTTGGTTACCGACCTGATGCAGTTATGTACGGTACATTTGTTCATGCATATTGCAGCATAGATAATATAAAAGAAGCAGAGAAGGTAATGACTAAGATGGATGAAGAAGGAATTTCTGCAGATTCATTGACATACGCATTTTTAATTGAGGCATATCTTCGTTTGGGATTAATAGATTCTGCATTTGATGTCTTTAAGCGCATGTTTGATGCTCATTGCAACCCTTGTCATCGCATCTATTACTTGCTCATCAAACACCTGTCAAATGAAAAGTTGCTGCAGACTGACAATAATGTAGTAGGACTTCATATGGTTTCAAGTGTCCCATCAGCTGATATGTGGAAGACAGTGGATTTTGAAATTGCTTTAGAGCTCCTGGAGAAGATGAATGAACATGGTTGTGCACCGAATGTGAAAACTTACGGTGAGCTTATAGTAGCACTTTGCAAAGTTAGGAACTTGGAAGTAGCCCGTAAGTTGTATGCTCATATGAGAGATACCAGCATTTCTCCTAGTGAGGATATTTGTAACTCTCTTCTTAAATGTTACTGCGAGTTGAAGGTGTATGGAGAAGCAGCTATTCTGGTGGACGCTATGATTCAGCTTGGTTATTTACCAGCATTGGAGTCGTGCAAATTGCTTGTATGTGGACTTTTTGAAGAAGAGAATAGTGAGAAGGCAAATTCTGTTTTCTGCAGAATTCTTTGTTGCGCGTATAACTACGATGAAGTAGCCTGGAAAGTTCTTCTTGAAGGTTTACTTACGAGGGGTCATATCAATAGATGCTCTGAGATGGTAACCGTCATCGAAAATATGGGTTACAAGCTTCATCCTGAGACCTATTCAATGTTAATTGAGGGATTTGATGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

892

Amino Acids

100.39

Weight (kDa)

7.48

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	176 - 283	5.4e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	186 - 235	6.8e-10	PPR repeat family
PPR_3	PF13812	213 - 266	1.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	218 - 247	1.2e-07	PPR repeat
PPR_2	PF13041	221 - 269	3e-13	PPR repeat family
PPR_long	PF17177	235 - 372	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	251 - 302	6.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	252 - 285	3.9e-11	PPR repeat
PPR_2	PF13041	256 - 305	2.1e-18	PPR repeat family
PPR	PF01535	259 - 289	8.1e-07	PPR repeat
PPR_3	PF13812	280 - 336	2.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	288 - 320	2.1e-07	PPR repeat
PPR_2	PF13041	295 - 340	3.3e-15	PPR repeat family
PPR	PF01535	295 - 324	4.7e-08	PPR repeat
PPR_long	PF17177	313 - 474	6.4e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	322 - 354	6.1e-08	PPR repeat
PPR_2	PF13041	330 - 366	2.6e-07	PPR repeat family
TPR_24	PF23276	346 - 426	1.1e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	350 - 408	9.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	357 - 390	4.3e-12	PPR repeat
PPR_2	PF13041	361 - 410	5e-17	PPR repeat family
PPR	PF01535	364 - 391	1.2e-06	PPR repeat
PPR_1	PF12854	394 - 424	1.3e-09	PPR repeat
PPR_3	PF13812	400 - 441	6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	400 - 445	2.8e-13	PPR repeat family
PPR_3	PF13812	420 - 476	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	429 - 460	7.3e-12	PPR repeat
PPR_2	PF13041	431 - 480	9.4e-17	PPR repeat family
PPR	PF01535	434 - 464	1.7e-06	PPR repeat
PPR_1	PF12854	463 - 493	9.5e-10	PPR repeat
PPR	PF01535	470 - 499	3.4e-06	PPR repeat
PPR_long	PF17177	484 - 599	5.1e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	487 - 592	4.8e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	490 - 546	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	497 - 529	9.6e-09	PPR repeat
PPR_2	PF13041	502 - 550	2.8e-15	PPR repeat family
PPR	PF01535	504 - 534	1.1e-07	PPR repeat
PPR_1	PF12854	533 - 564	7.9e-09	PPR repeat
PPR_2	PF13041	544 - 581	6.9e-09	PPR repeat family
PPR_2	PF13041	571 - 619	2.2e-07	PPR repeat family
PPR_3	PF13812	596 - 653	1.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	603 - 634	9.2e-06	PPR repeat
PPR_2	PF13041	606 - 651	7.1e-08	PPR repeat family
PPR_long	PF17177	716 - 783	5.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	726 - 784	2.3e-07	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
Acc36I	ACCTGC	1 cut(s)	1328
AccB7I	CCANNNNNTGG	1 cut(s)	1252
AccBSI	CCGCTC	1 cut(s)	1133
AccI	GTMKAC	1 cut(s)	1616
AccII	CGCG	1 cut(s)	2516
AccIII	TCCGGA	1 cut(s)	1081
AciI	CCGC	8 cut(s)	92, 133, 237, 325, 345, 358, 650, 1133
AclI	AACGTT	1 cut(s)	1731
AclWI	GGATC	1 cut(s)	739
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	6 cut(s)	275, 437, 1793, 1914, 2485, 2502
AcuI	CTGAAG	1 cut(s)	1016
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	4 cut(s)	842, 1097, 1832, 1837
AfiI	CCNNNNNNNGG	7 cut(s)	220, 351, 399, 754, 755, 1063, 1252
AgeI	ACCGGT	2 cut(s)	414, 1401
AhdI	GACNNNNNGTC	1 cut(s)	1060
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	4 cut(s)	254, 1245, 2178, 2537
Alw21I	GWGCWC	4 cut(s)	1002, 1245, 2178, 2209
Alw26I	GTCTC	3 cut(s)	202, 1436, 2633
Alw44I	GTGCAC	2 cut(s)	1241, 2205
AlwI	GGATC	1 cut(s)	739
AlwNI	CAGNNNCTG	1 cut(s)	1434
Aor13HI	TCCGGA	1 cut(s)	1081
AoxI	GGCC	3 cut(s)	18, 340, 828
ApaLI	GTGCAC	2 cut(s)	1241, 2205
ApeKI	GCWGC	4 cut(s)	1142, 1857, 2080, 2378
ApoI	RAATTY	6 cut(s)	275, 437, 1793, 1914, 2485, 2502
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AseI	ATTAAT	1 cut(s)	1973
AsiGI	ACCGGT	2 cut(s)	414, 1401
Asp700I	GAANNNNTTC	1 cut(s)	1212
AspA2I	CCTAGG	1 cut(s)	1633
AspLEI	GCGC	5 cut(s)	423, 880, 1258, 2004, 2516
AspS9I	GGNCC	4 cut(s)	223, 341, 355, 412
AsuC2I	CCSGG	2 cut(s)	221, 400
AsuHPI	GGTGA	7 cut(s)	19, 244, 445, 595, 754, 1281, 2240
AvaII	GGWCC	3 cut(s)	223, 355, 412
AvrII	CCTAGG	1 cut(s)	1633
AxyI	CCTNAGG	1 cut(s)	458
BaeGI	GKGCMC	2 cut(s)	1245, 2209
BaeI	ACNNNNGTAYC	2 cut(s)	1827, 1860
BanII	GRGCYC	2 cut(s)	804, 2178
BarI	GAAGNNNNNNTAC	2 cut(s)	2091, 2123
BbsI	GAAGAC	1 cut(s)	2153
Bbv12I	GWGCWC	4 cut(s)	1002, 1245, 2178, 2209
BbvCI	CCTCAGC	1 cut(s)	1593
BbvI	GCAGC	4 cut(s)	1129, 1869, 2067, 2390
BccI	CCATC	8 cut(s)	131, 1106, 1159, 1526, 1894, 2137, 2590, 2663
BceAI	ACGGC	3 cut(s)	33, 346, 1536
BcgI	CGANNNNNNTGC	2 cut(s)	2412, 2446
BciT130I	CCWGG	4 cut(s)	256, 1247, 2180, 2539
BclI	TGATCA	1 cut(s)	1317
BcnI	CCSGG	2 cut(s)	221, 400
BcoDI	GTCTC	3 cut(s)	202, 1436, 2633
BfaI	CTAG	6 cut(s)	978, 1008, 1041, 1052, 1634, 2316
BfmI	CTRYAG	4 cut(s)	1713, 1920, 2081, 2497
BfoI	RGCGCY	1 cut(s)	1259
BfuAI	ACCTGC	1 cut(s)	1328
BisI	GCNGC	4 cut(s)	1143, 1858, 2081, 2379
BlnI	CCTAGG	1 cut(s)	1633
BlsI	GCNGC	4 cut(s)	1144, 1859, 2082, 2380
Bme1390I	CCNGG	6 cut(s)	221, 256, 400, 1247, 2180, 2539
Bme18I	GGWCC	3 cut(s)	223, 355, 412
BmeRI	GACNNNNNGTC	1 cut(s)	1060
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	4 cut(s)	223, 341, 355, 412
BmiI	GGNNCC	3 cut(s)	343, 356, 1080
BmrFI	CCNGG	6 cut(s)	221, 256, 400, 1247, 2180, 2539
BmsI	GCATC	9 cut(s)	865, 1260, 1503, 1552, 1680, 1810, 2002, 2046, 2576
BpiI	GAAGAC	1 cut(s)	2153
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
BpmI	CTGGAG	1 cut(s)	2201
Bpu10I	CCTNAGC	1 cut(s)	1593
BpuEI	CTTGAG	2 cut(s)	1446, 1466
BpuMI	CCSGG	2 cut(s)	221, 400
Bsa29I	ATCGAT	1 cut(s)	1557
BsaAI	YACGTR	1 cut(s)	1095
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	2633
BsaJI	CCNNGG	1 cut(s)	1633
BsaWI	WCCGGW	3 cut(s)	414, 1081, 1401
BsaXI	ACNNNNNCTCC	8 cut(s)	185, 215, 278, 284, 308, 314, 320, 350
Bsc4I	CCNNNNNNNGG	7 cut(s)	220, 351, 399, 754, 755, 1063, 1252
Bse118I	RCCGGY	3 cut(s)	414, 423, 1401
Bse1I	ACTGG	1 cut(s)	146
Bse21I	CCTNAGG	1 cut(s)	458
Bse3DI	GCAATG	3 cut(s)	613, 1257, 2017
BseAI	TCCGGA	1 cut(s)	1081
BseBI	CCWGG	4 cut(s)	256, 1247, 2180, 2539
BseCI	ATCGAT	1 cut(s)	1557
BseDI	CCNNGG	1 cut(s)	1633
BseGI	GGATG	8 cut(s)	123, 718, 865, 942, 1090, 1275, 1909, 2632
BseLI	CCNNNNNNNGG	7 cut(s)	220, 351, 399, 754, 755, 1063, 1252
BseMI	GCAATG	3 cut(s)	613, 1257, 2017
BseMII	CTCAG	5 cut(s)	472, 1584, 1790, 2583, 2628
BseNI	ACTGG	1 cut(s)	146
BseSI	GKGCMC	2 cut(s)	1245, 2209
BseXI	GCAGC	4 cut(s)	1129, 1869, 2067, 2390
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	2516
BshFI	GGCC	3 cut(s)	20, 342, 830
BshTI	ACCGGT	2 cut(s)	414, 1401
BshVI	ATCGAT	1 cut(s)	1557
BsiHKAI	GWGCWC	4 cut(s)	1002, 1245, 2178, 2209
BsiSI	CCGG	8 cut(s)	95, 221, 339, 400, 415, 424, 1082, 1402
BslFI	GGGAC	1 cut(s)	2111
BslI	CCNNNNNNNGG	7 cut(s)	220, 351, 399, 754, 755, 1063, 1252
BsmAI	GTCTC	3 cut(s)	202, 1436, 2633
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	2111
BsmI	GAATGC	2 cut(s)	592, 1590
BsnI	GGCC	3 cut(s)	20, 342, 830
Bso31I	GGTCTC	1 cut(s)	2633
Bsp1286I	GDGCHC	5 cut(s)	804, 1002, 1245, 2178, 2209
Bsp13I	TCCGGA	1 cut(s)	1081
Bsp143I	GATC	5 cut(s)	24, 450, 639, 744, 1317
BspACI	CCGC	8 cut(s)	92, 133, 237, 325, 345, 358, 650, 1133
BspANI	GGCC	3 cut(s)	20, 342, 830
BspCNI	CTCAG	5 cut(s)	471, 1585, 1789, 2584, 2629
BspDI	ATCGAT	1 cut(s)	1557
BspEI	TCCGGA	1 cut(s)	1081
BspFNI	CGCG	1 cut(s)	2516
BspLI	GGNNCC	3 cut(s)	343, 356, 1080
BspMAI	CTGCAG	3 cut(s)	1924, 2085, 2501
BspMI	ACCTGC	1 cut(s)	1328
BspPI	GGATC	1 cut(s)	739
BspQI	GCTCTTC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	2633
BsrBI	CCGCTC	1 cut(s)	1133
BsrDI	GCAATG	3 cut(s)	613, 1257, 2017
BsrFI	RCCGGY	3 cut(s)	414, 423, 1401
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	3 cut(s)	414, 423, 1401
BssECI	CCNNGG	1 cut(s)	1633
BssMI	GATC	5 cut(s)	24, 450, 639, 744, 1317
BssNAI	GTATAC	1 cut(s)	1617
BssNI	GRCGYC	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	1633
Bst1107I	GTATAC	1 cut(s)	1617
Bst2UI	CCWGG	4 cut(s)	256, 1247, 2180, 2539
Bst4CI	ACNGT	8 cut(s)	1415, 1430, 1625, 1717, 1835, 2152, 2228, 2605
Bst6I	CTCTTC	4 cut(s)	122, 212, 2343, 2460
BstACI	GRCGYC	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	1095
BstC8I	GCNNGC	6 cut(s)	261, 814, 1195, 1544, 1567, 1590
BstDEI	CTNAG	9 cut(s)	458, 1176, 1367, 1593, 1694, 1776, 1896, 2592, 2637
BstEII	GGTNACC	2 cut(s)	1808, 2599
BstF5I	GGATG	8 cut(s)	123, 718, 865, 942, 1090, 1275, 1909, 2632
BstFNI	CGCG	1 cut(s)	2516
BstH2I	RGCGCY	1 cut(s)	1259
BstHHI	GCGC	5 cut(s)	423, 880, 1258, 2004, 2516
BstKTI	GATC	5 cut(s)	27, 453, 642, 747, 1320
BstMAI	GTCTC	3 cut(s)	202, 1436, 2633
BstMBI	GATC	5 cut(s)	24, 450, 639, 744, 1317
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 1139
BstNI	CCWGG	4 cut(s)	256, 1247, 2180, 2539
BstNSI	RCATGY	1 cut(s)	2008
BstPI	GGTNACC	2 cut(s)	1808, 2599
BstSCI	CCNGG	6 cut(s)	219, 254, 398, 1245, 2178, 2537
BstSFI	CTRYAG	4 cut(s)	1713, 1920, 2081, 2497
BstSLI	GKGCMC	2 cut(s)	1245, 2209
BstUI	CGCG	1 cut(s)	2516
BstV1I	GCAGC	4 cut(s)	1129, 1869, 2067, 2390
BstV2I	GAAGAC	1 cut(s)	2153
BstZ17I	GTATAC	1 cut(s)	1617
Bsu15I	ATCGAT	1 cut(s)	1557
Bsu36I	CCTNAGG	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	20, 342, 830
BsuTUI	ATCGAT	1 cut(s)	1557
BtgZI	GCGATG	1 cut(s)	2018
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	8 cut(s)	123, 718, 865, 942, 1090, 1275, 1909, 2632
BtsI	GCAGTG	1 cut(s)	1334
BtsIMutI	CAGTG	4 cut(s)	1334, 1420, 1683, 2157
BveI	ACCTGC	1 cut(s)	1328
Cac8I	GCNNGC	6 cut(s)	261, 814, 1195, 1544, 1567, 1590
CaiI	CAGNNNCTG	1 cut(s)	1434
CfoI	GCGC	5 cut(s)	423, 880, 1258, 2004, 2516
Cfr10I	RCCGGY	3 cut(s)	414, 423, 1401
Cfr13I	GGNCC	4 cut(s)	223, 341, 355, 412
ClaI	ATCGAT	1 cut(s)	1557
CseI	GACGC	2 cut(s)	404, 2402
Csp6I	GTAC	4 cut(s)	841, 1096, 1831, 1836
CspAI	ACCGGT	2 cut(s)	414, 1401
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
CviAII	CATG	9 cut(s)	580, 902, 1217, 1343, 1745, 1772, 1847, 2005, 2198
CviQI	GTAC	4 cut(s)	841, 1096, 1831, 1836
DdeI	CTNAG	9 cut(s)	458, 1176, 1367, 1593, 1694, 1776, 1896, 2592, 2637
DpnI	GATC	5 cut(s)	26, 452, 641, 746, 1319
DpnII	GATC	5 cut(s)	24, 450, 639, 744, 1317
DriI	GACNNNNNGTC	1 cut(s)	1060
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	4 cut(s)	122, 212, 2343, 2460
Eam1105I	GACNNNNNGTC	1 cut(s)	1060
EarI	CTCTTC	4 cut(s)	122, 212, 2343, 2460
Ecl136II	GAGCTC	1 cut(s)	2176
Eco130I	CCWWGG	1 cut(s)	1633
Eco147I	AGGCCT	1 cut(s)	830
Eco24I	GRGCYC	2 cut(s)	804, 2178
Eco31I	GGTCTC	1 cut(s)	2633
Eco47I	GGWCC	3 cut(s)	223, 355, 412
Eco53kI	GAGCTC	1 cut(s)	2176
Eco57I	CTGAAG	1 cut(s)	1016
Eco81I	CCTNAGG	1 cut(s)	458
Eco91I	GGTNACC	2 cut(s)	1808, 2599
EcoICRI	GAGCTC	1 cut(s)	2176
EcoO65I	GGTNACC	2 cut(s)	1808, 2599
EcoRI	GAATTC	2 cut(s)	437, 2502
EcoRII	CCWGG	4 cut(s)	254, 1245, 2178, 2537
EcoT14I	CCWWGG	1 cut(s)	1633
EcoT22I	ATGCAT	3 cut(s)	907, 1105, 1852
EcoT38I	GRGCYC	2 cut(s)	804, 2178
ErhI	CCWWGG	1 cut(s)	1633
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	9 cut(s)	583, 905, 1220, 1346, 1748, 1775, 1850, 2008, 2201
FalI	AAGNNNNNCTT	4 cut(s)	2535, 2567, 2547, 2579
FaqI	GGGAC	1 cut(s)	2111
FatI	CATG	9 cut(s)	579, 901, 1216, 1342, 1744, 1771, 1846, 2004, 2197
FauI	CCCGC	3 cut(s)	140, 352, 643
FauNDI	CATATG	2 cut(s)	2112, 2292
FbaI	TGATCA	1 cut(s)	1317
FblI	GTMKAC	1 cut(s)	1616
Fnu4HI	GCNGC	4 cut(s)	1143, 1858, 2081, 2379
FokI	GGATG	8 cut(s)	110, 725, 872, 949, 1097, 1282, 1916, 2619
FriOI	GRGCYC	2 cut(s)	804, 2178
Fsp4HI	GCNGC	4 cut(s)	1143, 1858, 2081, 2379
FspBI	CTAG	6 cut(s)	978, 1008, 1041, 1052, 1634, 2316
GlaI	GCGC	5 cut(s)	422, 879, 1257, 2003, 2515
GluI	GCNGC	4 cut(s)	1143, 1858, 2081, 2379
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	1 cut(s)	2201
HaeII	RGCGCY	1 cut(s)	1259
HaeIII	GGCC	3 cut(s)	20, 342, 830
HapII	CCGG	8 cut(s)	95, 221, 339, 400, 415, 424, 1082, 1402
HgaI	GACGC	2 cut(s)	404, 2402
HhaI	GCGC	5 cut(s)	423, 880, 1258, 2004, 2516
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	9 cut(s)	583, 905, 1220, 1346, 1748, 1775, 1850, 2008, 2201
Hin6I	GCGC	5 cut(s)	421, 878, 1256, 2002, 2514
HinP1I	GCGC	5 cut(s)	421, 878, 1256, 2002, 2514
HindIII	AAGCTT	3 cut(s)	1028, 1544, 2627
HinfI	GANTC	9 cut(s)	470, 1153, 1169, 1213, 1475, 1925, 1979, 2401, 2429
HpaII	CCGG	8 cut(s)	95, 221, 339, 400, 415, 424, 1082, 1402
HphI	GGTGA	7 cut(s)	19, 244, 445, 595, 754, 1281, 2240
Hpy188I	TCNGA	2 cut(s)	1779, 2593
Hpy188III	TCNNGA	7 cut(s)	448, 1052, 1082, 1262, 1397, 2552, 2636
Hpy99I	CGWCG	2 cut(s)	19, 398
HpyCH4III	ACNGT	8 cut(s)	1415, 1430, 1625, 1717, 1835, 2152, 2228, 2605
HpyCH4IV	ACGT	5 cut(s)	195, 288, 1094, 1199, 1731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 1139
HpyF3I	CTNAG	9 cut(s)	458, 1176, 1367, 1593, 1694, 1776, 1896, 2592, 2637
HpySE526I	ACGT	5 cut(s)	195, 288, 1094, 1199, 1731
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	9 cut(s)	583, 905, 1220, 1346, 1748, 1775, 1850, 2008, 2201
HspAI	GCGC	5 cut(s)	421, 878, 1256, 2002, 2514
Kpn2I	TCCGGA	1 cut(s)	1081
Ksp22I	TGATCA	1 cut(s)	1317
Kzo9I	GATC	5 cut(s)	24, 450, 639, 744, 1317
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	1130, 2181
Lsp1109I	GCAGC	4 cut(s)	1129, 1869, 2067, 2390
LweI	GCATC	9 cut(s)	865, 1260, 1503, 1552, 1680, 1810, 2002, 2046, 2576
MaeI	CTAG	6 cut(s)	978, 1008, 1041, 1052, 1634, 2316
MaeII	ACGT	5 cut(s)	195, 288, 1094, 1199, 1731
MalI	GATC	5 cut(s)	26, 452, 641, 746, 1319
MbiI	CCGCTC	1 cut(s)	1133
MboI	GATC	5 cut(s)	24, 450, 639, 744, 1317
MhlI	GDGCHC	5 cut(s)	804, 1002, 1245, 2178, 2209
MlyI	GAGTC	1 cut(s)	2438
MmeI	TCCRAC	1 cut(s)	519
Mph1103I	ATGCAT	3 cut(s)	907, 1105, 1852
MroI	TCCGGA	1 cut(s)	1081
MroXI	GAANNNNTTC	1 cut(s)	1212
MslI	CAYNNNNRTG	2 cut(s)	365, 2202
MspA1I	CMGCKG	1 cut(s)	2135
MspI	CCGG	8 cut(s)	95, 221, 339, 400, 415, 424, 1082, 1402
MspR9I	CCNGG	6 cut(s)	221, 256, 400, 1247, 2180, 2539
Mva1269I	GAATGC	2 cut(s)	592, 1590
MvaI	CCWGG	4 cut(s)	256, 1247, 2180, 2539
MvnI	CGCG	1 cut(s)	2516
MwoI	GCNNNNNNNGC	2 cut(s)	339, 1139
NciI	CCSGG	2 cut(s)	221, 400
NdeI	CATATG	2 cut(s)	2112, 2292
NdeII	GATC	5 cut(s)	24, 450, 639, 744, 1317
NlaIII	CATG	9 cut(s)	583, 905, 1220, 1346, 1748, 1775, 1850, 2008, 2201
NlaIV	GGNNCC	3 cut(s)	343, 356, 1080
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	2 cut(s)	1016, 1090
NsiI	ATGCAT	3 cut(s)	907, 1105, 1852
NspI	RCATGY	1 cut(s)	2008
PceI	AGGCCT	1 cut(s)	830
PciSI	GCTCTTC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	2 cut(s)	592, 1590
PdmI	GAANNNNTTC	1 cut(s)	1212
PfeI	GAWTC	8 cut(s)	470, 1153, 1169, 1213, 1475, 1925, 1979, 2401
PflMI	CCANNNNNTGG	1 cut(s)	1252
PfoI	TCCNGGA	1 cut(s)	2178
PinAI	ACCGGT	2 cut(s)	414, 1401
PkrI	GCNGC	4 cut(s)	1144, 1859, 2082, 2380
PleI	GAGTC	1 cut(s)	2437
PpsI	GAGTC	1 cut(s)	2437
Ppu21I	YACGTR	1 cut(s)	1095
PshBI	ATTAAT	1 cut(s)	1973
PsiI	TTATAA	1 cut(s)	993
Psp124BI	GAGCTC	1 cut(s)	2178
Psp1406I	AACGTT	1 cut(s)	1731
Psp6I	CCWGG	4 cut(s)	254, 1245, 2178, 2537
PspEI	GGTNACC	2 cut(s)	1808, 2599
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	4 cut(s)	254, 1245, 2178, 2537
PspN4I	GGNNCC	3 cut(s)	343, 356, 1080
PspPI	GGNCC	4 cut(s)	223, 341, 355, 412
PstI	CTGCAG	3 cut(s)	1924, 2085, 2501
PstNI	CAGNNNCTG	1 cut(s)	1434
PvuII	CAGCTG	1 cut(s)	2135
RsaI	GTAC	4 cut(s)	842, 1097, 1832, 1837
RsaNI	GTAC	4 cut(s)	841, 1096, 1831, 1836
RseI	CAYNNNNRTG	2 cut(s)	365, 2202
SacI	GAGCTC	1 cut(s)	2178
SapI	GCTCTTC	1 cut(s)	122
SatI	GCNGC	4 cut(s)	1143, 1858, 2081, 2379
Sau3AI	GATC	5 cut(s)	24, 450, 639, 744, 1317
Sau96I	GGNCC	4 cut(s)	223, 341, 355, 412
SchI	GAGTC	1 cut(s)	2438
ScrFI	CCNGG	6 cut(s)	221, 256, 400, 1247, 2180, 2539
SduI	GDGCHC	5 cut(s)	804, 1002, 1245, 2178, 2209
SfaNI	GCATC	9 cut(s)	865, 1260, 1503, 1552, 1680, 1810, 2002, 2046, 2576
SfcI	CTRYAG	4 cut(s)	1713, 1920, 2081, 2497
SinI	GGWCC	3 cut(s)	223, 355, 412
SmiMI	CAYNNNNRTG	2 cut(s)	365, 2202
SmlI	CTYRAG	2 cut(s)	1461, 1481
SmoI	CTYRAG	2 cut(s)	1461, 1481
SseBI	AGGCCT	1 cut(s)	830
SsiI	CCGC	8 cut(s)	92, 133, 237, 325, 345, 358, 650, 1133
SspMI	CTAG	6 cut(s)	978, 1008, 1041, 1052, 1634, 2316
SstI	GAGCTC	1 cut(s)	2178
StuI	AGGCCT	1 cut(s)	830
StyD4I	CCNGG	6 cut(s)	219, 254, 398, 1245, 2178, 2537
StyI	CCWWGG	1 cut(s)	1633
TaaI	ACNGT	8 cut(s)	1415, 1430, 1625, 1717, 1835, 2152, 2228, 2605
TaiI	ACGT	5 cut(s)	198, 291, 1097, 1202, 1734
TaqI	TCGA	4 cut(s)	365, 1425, 1557, 2610
TatI	WGTACW	1 cut(s)	840
TfiI	GAWTC	8 cut(s)	470, 1153, 1169, 1213, 1475, 1925, 1979, 2401
TscAI	CASTG	4 cut(s)	1334, 1420, 1683, 2157
TseFI	GTSAC	2 cut(s)	1016, 1090
TseI	GCWGC	4 cut(s)	1142, 1857, 2080, 2378
Tsp45I	GTSAC	2 cut(s)	1016, 1090
TspGWI	ACGGA	1 cut(s)	1294
TspRI	CASTG	4 cut(s)	1334, 1420, 1683, 2157
Van91I	CCANNNNNTGG	1 cut(s)	1252
VneI	GTGCAC	2 cut(s)	1241, 2205
VpaK11BI	GGWCC	3 cut(s)	223, 355, 412
VspI	ATTAAT	1 cut(s)	1973
XapI	RAATTY	6 cut(s)	275, 437, 1793, 1914, 2485, 2502
XbaI	TCTAGA	1 cut(s)	1051
XceI	RCATGY	1 cut(s)	2008
XmaJI	CCTAGG	1 cut(s)	1633
XmiI	GTMKAC	1 cut(s)	1616
XmnI	GAANNNNTTC	1 cut(s)	1212
XspI	CTAG	6 cut(s)	978, 1008, 1041, 1052, 1634, 2316
Zsp2I	ATGCAT	3 cut(s)	907, 1105, 1852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.