Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Forward (+)

38618616 .. 38619611

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38890.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAATTCTATTTCGATTCCAGAACATTTAATCCAACTCCTCCTCAATTCAATTCCTCCTTAATTCAATTCTTCATATTTTCATTACTGTTACGTAAACTCTCCATAAATTCCAAAACGAACCCCAAACAAACCTACTATTTTCTCTTCCCTCCACCTTCCCACTCTCCGACTCATACAGCATTTCTTGGTCCGAAGAAGAAGATGATGAGAAAACCCATGCTCTTCTCCCTTCTCTCCCGCCCCAATTGGCAGCGCCACCCTTCCCTAAAAAAACTTGCCCCCTCCATATCCCCTTCCCATGTCTCCTCCGTCTTCGCTCTCAAACTCGACCCCCAAACGGCCCTCGGATTCTTCAACTGGATTGCCCTTAAACCCGGATACAAGCACACTGTCCAGTGCCATTCTTCCCTCCTCAACATTCTCCTTCCCAATGGGTTTCTCCAGGTCGCGCAAAAGATCCGAATTTCCATGATTAAGGCTTCCAGTTCCCCTCAAGATGCCGTTTTTGTGCTCGAATATTTGCGGGCATTGAATGGCGCCGAAGAGTTCGAGTTTAAGCTCACCCTCAGGTGCTACAATTTTCTTCTAATGTCATTGTCTAGGTTTTCCCTGTTTCAAGATTTGAAAGCTCTGTACTTGGAGATGTTAGACGATATGGTTTCGCCAAATCTGCATACTTTTAATACCATGATCAATGCTTACTGTAAATTGGGTAATGTGGCTGAGGCAGACTTGTATTTCAGTAAGATAGGGCAGGCGGGTTTGCACCCCGATACGTTTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

263

Amino Acids

29.99

Weight (kDa)

9.77

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AccII	CGCG	1 cut(s)	452
AciI	CCGC	3 cut(s)	241, 526, 761
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	3 cut(s)	5, 109, 465
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	6 cut(s)	52, 68, 358, 535, 620, 628
AjnI	CCWGG	1 cut(s)	444
AloI	GAACNNNNNNTCC	2 cut(s)	16, 48
AluBI	AGCT	2 cut(s)	562, 632
AluI	AGCT	2 cut(s)	562, 632
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	454
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	3 cut(s)	5, 109, 465
AspLEI	GCGC	3 cut(s)	258, 454, 542
AspS9I	GGNCC	2 cut(s)	191, 343
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	357, 488
BciT130I	CCWGG	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	603
BfoI	RGCGCY	2 cut(s)	259, 543
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	378, 446
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 343
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	2 cut(s)	378, 446
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	3 cut(s)	365, 397, 486
Bse21I	CCTNAGG	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	583, 717
BseNI	ACTGG	3 cut(s)	365, 397, 486
BseRI	GAGGAG	4 cut(s)	30, 33, 298, 404
BseXI	GCAGC	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	459, 693
BspACI	CCGC	3 cut(s)	241, 526, 761
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	582, 718
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	539
BsrI	ACTGG	3 cut(s)	365, 397, 486
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	2 cut(s)	459, 693
BssNI	GRCGYC	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	3 cut(s)	90, 394, 707
Bst6I	CTCTTC	3 cut(s)	152, 230, 540
BstACI	GRCGYC	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	528, 759
BstDEI	CTNAG	2 cut(s)	569, 726
BstFNI	CGCG	1 cut(s)	452
BstH2I	RGCGCY	2 cut(s)	259, 543
BstHHI	GCGC	3 cut(s)	258, 454, 542
BstKTI	GATC	2 cut(s)	462, 696
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	2 cut(s)	459, 693
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	376, 444
BstSNI	TACGTA	1 cut(s)	95
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	569
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	390, 404
Cac8I	GCNNGC	2 cut(s)	528, 759
CfoI	GCGC	3 cut(s)	258, 454, 542
Cfr13I	GGNCC	2 cut(s)	191, 343
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	4 cut(s)	220, 302, 472, 691
CviJI	RGCY	5 cut(s)	344, 482, 562, 632, 725
CviKI_1	RGCY	5 cut(s)	344, 482, 562, 632, 725
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	2 cut(s)	569, 726
DinI	GGCGCC	1 cut(s)	541
DpnI	GATC	2 cut(s)	461, 695
DpnII	GATC	2 cut(s)	459, 693
Eam1104I	CTCTTC	3 cut(s)	152, 230, 540
EarI	CTCTTC	3 cut(s)	152, 230, 540
Eco105I	TACGTA	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	444
EgeI	GGCGCC	1 cut(s)	541
EheI	GGCGCC	1 cut(s)	541
FaeI	CATG	4 cut(s)	223, 305, 475, 694
FatI	CATG	4 cut(s)	219, 301, 471, 690
FauI	CCCGC	3 cut(s)	248, 519, 754
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	3 cut(s)	257, 453, 541
GluI	GCNGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	2 cut(s)	259, 543
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	3 cut(s)	258, 454, 542
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	4 cut(s)	223, 305, 475, 694
Hin6I	GCGC	3 cut(s)	256, 452, 540
HinP1I	GCGC	3 cut(s)	256, 452, 540
HinfI	GANTC	3 cut(s)	17, 172, 351
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	2 cut(s)	98, 783
Hpy188I	TCNGA	4 cut(s)	171, 195, 350, 464
Hpy188III	TCNNGA	3 cut(s)	21, 497, 620
Hpy8I	GTNNAC	2 cut(s)	98, 783
HpyAV	CCTTC	5 cut(s)	168, 242, 273, 306, 437
HpyCH4III	ACNGT	3 cut(s)	90, 394, 707
HpyCH4IV	ACGT	2 cut(s)	94, 779
HpyCH4V	TGCA	2 cut(s)	676, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	2 cut(s)	569, 726
HpySE526I	ACGT	2 cut(s)	94, 779
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	4 cut(s)	223, 305, 475, 694
HspAI	GCGC	3 cut(s)	256, 452, 540
KasI	GGCGCC	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	2 cut(s)	459, 693
LguI	GCTCTTC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	2 cut(s)	94, 779
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	2 cut(s)	461, 695
MboI	GATC	2 cut(s)	459, 693
MfeI	CAATTG	1 cut(s)	247
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	516
Mly113I	GGCGCC	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	2 cut(s)	59, 194
MseI	TTAA	6 cut(s)	30, 62, 372, 477, 558, 684
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	378, 446
MunI	CAATTG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	1 cut(s)	673
NarI	GGCGCC	1 cut(s)	540
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	459, 693
NlaIII	CATG	4 cut(s)	223, 305, 475, 694
NlaIV	GGNNCC	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	17, 351
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	166
PluTI	GGCGCC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	2 cut(s)	191, 343
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	6 cut(s)	30, 62, 372, 477, 558, 684
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	2 cut(s)	459, 693
Sau96I	GGNCC	2 cut(s)	191, 343
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	378, 446
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	1 cut(s)	490
SfoI	GGCGCC	1 cut(s)	541
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
SnaBI	TACGTA	1 cut(s)	95
SsiI	CCGC	3 cut(s)	241, 526, 761
SspDI	GGCGCC	1 cut(s)	539
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	2 cut(s)	376, 444
TaaI	ACNGT	3 cut(s)	90, 394, 707
TaiI	ACGT	2 cut(s)	97, 782
TaqI	TCGA	4 cut(s)	15, 330, 516, 552
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	2 cut(s)	17, 351
Tru1I	TTAA	6 cut(s)	30, 62, 372, 477, 558, 684
Tru9I	TTAA	6 cut(s)	30, 62, 372, 477, 558, 684
TscAI	CASTG	2 cut(s)	397, 404
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	17, 64, 72
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	2 cut(s)	397, 404
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	3 cut(s)	5, 109, 465
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.