Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Forward (+)

54094823 .. 54100019

Gene Structure 5197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1441200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGGCCGTCATCTGCCACCCACCTGAGCCCTTCCTCTTCCTCCTCCTCAAACCCTTTTATTCCATTTCCTCCCCCGCCACCGCTCCCCTTCCCCTCTCCCCCGAACCGCACGATCTCTCCGCCCAGCTCTTCTCCATTCTCTCCCGCCCCAATTGGCAGCGCCACCCTTCCCTAAAAAAACTTGCCCCCTCCATATCCCCTTCTCATGTCTCCTCCGTCTTCGCTCTCAAACTCGACCCCCAAACGGCCCTCGGATTCTTCAACTGGATTGCCCTTAAACCCGGATACAAGCACACTGTCCAGTGCCATTCTTCCCTCCTCAACATTCTCCTTCCCAATGGGTTTCTCCAGGTCGCGGAAAAGATCCGAATTTCCATGATTAAGGCGTCCAGTTCCCCACAAGATGCCGTTTTTGTGCTCGAATATTTGCGGGCATTGAATGGCGCCGAAGAGTTCGAGTTCAAGCTCACCCTCAGGTGCTACAATTTTCTTCTAATGTCATTGTCTAAGTTTTCCCTGTTTCAAGATTTGAAAGCTCTGTACTTGGAGATGTTAGACGATATGGTTTCGCCAAATCTGCATACTTTTAATACCATGATCCATGCTTACTGTAAATTGGGTAACGTGGCCGAGGCGGACTTGTATTTCAGTAAGATAGGGCAGGCGGGTTTGCACCCCGATACGTTTACCTACACTTCATTGATCCTGGGGCATTGTAGGAATAAGGATGTGGATAGTGGTTGTAGTGTTTTCAAGCTAATGCCGCAAAAGGGTTGTCAAAGAAATGAGGTTTCCTATACTAATTTGATTCATGGGTTTTGTGAGGCTGATCGGATCGATGAGGCTCTCAAGTTGTTTTCTCAAATGGGGGAGGATAATTGTTTTCCGACTGTGCGTACATTTACAGTTCTTATTTGCGCCTTGTGTAAATTGGGAAGGAAAATAGAAGCTATGAATCTGTTTAAAGAGATGACGGAAATGGGTTGTGAACCAAATGTTCATACTTATACTGTGCTCATTGATAGCATGTGTAAGGAAAATAAGCTTGATAAGGCAAGAAACTTGCTAAACAAGATGTTGGAGAAAAGGTTGGTTCCTAATGTTGTCACGTACAACGCAATGATTGATGGGTACTGCAAGGAGGGAGCAGTTGAGGCTGCACTTGGTATTTTGGCTTTGATGGAATCGAGTAATTGTTTTCCAAATGCTCGGACGTACAATGAATTGATTTGTGGATTTTGTAAAAGGAAAAATATACACCAGGCAATGGCACTGCTTGGTAAGATGCTTGATCGGAAACTCTCACCAAGCCTATATACATATAACTCATTAATCCATGGGCAATGTAAAATAGGTCATTTGGAGAGTGCTTATAGGCTGCTTAATTTGATGAAAGAAGGCGGTTTGGTTCCTGACCAATGGTCTTACAGTTCTCTCATAGACACACTCTGTAAGAAGGGGAGACTGGAAGAAGCTCATGCCCTGTTTGATTCTCTCAAAGAGAAAGGCATAAAGTTGAATGACGTGATCTTTACTGCTTTGATTGATGGTTATTGCACGGTTGGGAAAATTGACGATGCCCATTCTTTGTTTGATAGAATGCTTGTAGAAGACTGTTTGCCGAACTCATACACTTACAATACCTTGATAGATGTGTTGTGCAAAGAAGGAAGACTGAAGGAAGCATTATCACTGGTAGAAAAGATGGTAAGTATTGGTGTGAAAGCTACAGTACATACTTATACAATTCTAATTAAACAAATGTTGAAGGAAGGGGACTTTGACCATGCTCATAGGCTTTTAAACCAGATGGTTAGTTCTGGTAATCAGCCTGACCTATTTACTTACACCACCTTTATTCATGCATATTGCGGCATAGGAAATGTAGAAGAGGCAGAGAAATTGATGATTAAGATGAATGAAGAAGGAATTGTAGCAGATTCGTTGACTTACACATTGCTAATTGATGGATATGGACGCATGGGATTAATTGATTGTGCATTTGATGTTCTTAAGCGCATGTTTGATGCTTCTTGTGATCCTTCGCATTATACCTATTCCTTTCTGATCAAACATCTTTCAAATGAAAAGTTGACAGAGACAAGGAATAATATACTGGGAATGGATTTGATCTCAAATGTCTCCTTGATTGATATTGCTGATGTGTGGAAGATAATGGATTTTGACATTGCTTTAGACCTTTTTGAAAAAATGACTGGACATGGTTGTGCACCCAGTACCAACACTTATGACAAACTTATAGTAGGTCTTTGCAAAGAGAGGCGCTTGGAAGAAGCCCAGAGGTTATACAGTCATATGAAAGAGAGGGAAGTTTCTCCCAGTGAGGATATTTATAATTATCTTCTTAACTGTTGCTGTACATTGCAAAAGTATGGAGAGGCAGCAATCTTGGTGGATGCGATGATTGAGGATGGTTATTTACCGACATTGGAGTCCTCCACGTTGCTTGTATGTGGGCTTCTTGATGAAGAGAAGAGTGAGAAGGCAAAAGCAGTTTTTCGTACTTTGCTTCATTGCGAATATAATTACGATGAAGTAGCTTGGAAAGTTCTCTTTGATGGTTTACTTAAGAGGGGTCTTGGCAATATATGCTCTGAGCTCATAAGCATCATGGAGAAGTTGGGTTGCCGGCTTCATCCTCAGACATATTCAATGTTGATTGAGGGAATCGATAGTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

901

Amino Acids

101.44

Weight (kDa)

5.91

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	160 - 205	9.3e-07	PPR repeat family
PPR_1	PF12854	188 - 212	3.1e-07	PPR repeat
PPR_2	PF13041	191 - 240	1.8e-12	PPR repeat family
PPR_1	PF12854	223 - 254	2.1e-07	PPR repeat
PPR_2	PF13041	226 - 274	1.6e-13	PPR repeat family
PPR	PF01535	229 - 259	8.6e-06	PPR repeat
TPR_24	PF23276	241 - 356	3.7e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	250 - 307	2.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	257 - 289	9.5e-11	PPR repeat
PPR_2	PF13041	262 - 310	8e-16	PPR repeat family
PPR	PF01535	264 - 294	4.9e-07	PPR repeat
PPR_1	PF12854	293 - 325	7e-08	PPR repeat
PPR_3	PF13812	299 - 342	1e-05	Pentatricopeptide repeat domain
PPR	PF01535	300 - 329	4.7e-07	PPR repeat
PPR_2	PF13041	304 - 345	2.2e-13	PPR repeat family
PPR_long	PF17177	317 - 404	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	320 - 378	7.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	327 - 359	4.6e-12	PPR repeat
PPR	PF01535	335 - 363	4.9e-06	PPR repeat
PPR_2	PF13041	336 - 379	2.6e-13	PPR repeat family
PPR_3	PF13812	355 - 411	2.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	363 - 395	6.2e-10	PPR repeat
PPR_2	PF13041	366 - 415	1.8e-17	PPR repeat family
PPR	PF01535	369 - 399	1.1e-07	PPR repeat
PPR_long	PF17177	390 - 501	5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	398 - 429	9.7e-09	PPR repeat
PPR_2	PF13041	405 - 450	6.2e-13	PPR repeat family
PPR_3	PF13812	425 - 483	4.7e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	431 - 533	1.7e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	434 - 465	5.3e-09	PPR repeat
PPR	PF01535	439 - 468	7e-06	PPR repeat
PPR_2	PF13041	439 - 485	2.3e-14	PPR repeat family
PPR_1	PF12854	468 - 498	1.9e-09	PPR repeat
PPR	PF01535	475 - 504	7.1e-07	PPR repeat
PPR_2	PF13041	475 - 508	7.4e-07	PPR repeat family
PPR_long	PF17177	488 - 587	1.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	495 - 553	9.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	502 - 534	2.9e-09	PPR repeat
PPR_2	PF13041	507 - 555	4.9e-16	PPR repeat family
PPR	PF01535	509 - 539	3.2e-06	PPR repeat
PPR_1	PF12854	538 - 570	2.5e-13	PPR repeat
TPR_24	PF23276	543 - 634	8.7e-07	Fungal tetratrico peptide repeats
PPR	PF01535	544 - 574	8.6e-09	PPR repeat
PPR_2	PF13041	544 - 588	5.3e-14	PPR repeat family
PPR_long	PF17177	580 - 691	1.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	583 - 624	7.9e-11	PPR repeat family
PPR_3	PF13812	599 - 660	2.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	610 - 639	1.9e-08	PPR repeat
PPR_2	PF13041	611 - 659	2.4e-13	PPR repeat family
PPR	PF01535	614 - 644	2.1e-06	PPR repeat
PPR_3	PF13812	635 - 693	1.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	643 - 674	3.3e-07	PPR repeat
PPR_2	PF13041	647 - 694	5.5e-10	PPR repeat family
PPR_long	PF17177	726 - 839	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	734 - 792	4.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	742 - 774	5.2e-06	PPR repeat
PPR_2	PF13041	745 - 793	4.7e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2355
AasI	GACNNNNNNGTC	1 cut(s)	2452
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	1267
AccBSI	CCGCTC	1 cut(s)	83
AccII	CGCG	1 cut(s)	356
AclWI	GGATC	5 cut(s)	358, 592, 697, 842, 2033
AcoI	YGGCCR	2 cut(s)	3, 627
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	1697
AcyI	GRCGYC	2 cut(s)	386, 444
AfaI	GTAC	9 cut(s)	542, 898, 1112, 1133, 1217, 1734, 2239, 2380, 2524
AfiI	CCNNNNNNNGG	4 cut(s)	244, 355, 770, 1267
AflII	CTTAAG	2 cut(s)	2012, 2588
AhdI	GACNNNNNGTC	1 cut(s)	1420
AjiI	CACGTC	1 cut(s)	1525
AjnI	CCWGG	3 cut(s)	348, 705, 1260
Alw21I	GWGCWC	4 cut(s)	420, 1017, 2233, 2622
Alw26I	GTCTC	4 cut(s)	214, 1456, 2093, 2146
Alw44I	GTGCAC	1 cut(s)	2229
AlwI	GGATC	5 cut(s)	358, 592, 697, 842, 2033
AoxI	GGCC	3 cut(s)	3, 246, 627
ApaLI	GTGCAC	1 cut(s)	2229
ApeKI	GCWGC	4 cut(s)	157, 1157, 1378, 2402
ApoI	RAATTY	1 cut(s)	369
ArsI	GACNNNNNNTTYG	2 cut(s)	760, 792
AseI	ATTAAT	2 cut(s)	1331, 1988
AspLEI	GCGC	5 cut(s)	162, 446, 920, 2019, 2286
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	460, 1296
AxyI	CCTNAGG	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	2233
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	2 cut(s)	30, 2622
BarI	GAAGNNNNNNTAC	2 cut(s)	2463, 2495
BbsI	GAAGAC	3 cut(s)	211, 1617, 1678
Bbv12I	GWGCWC	4 cut(s)	420, 1017, 2233, 2622
BbvI	GCAGC	4 cut(s)	169, 1144, 1365, 2414
BccI	CCATC	8 cut(s)	1121, 1174, 1541, 1699, 1804, 1961, 2426, 2573
BceAI	ACGGC	2 cut(s)	261, 392
BciT130I	CCWGG	3 cut(s)	350, 707, 1262
BciVI	GTATCC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	2067
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	4 cut(s)	214, 1456, 2093, 2146
BfmI	CTRYAG	1 cut(s)	1728
BfoI	RGCGCY	3 cut(s)	163, 447, 2287
BfrI	CTTAAG	2 cut(s)	2012, 2588
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	6 cut(s)	158, 764, 1158, 1379, 1873, 2403
BlsI	GCNGC	6 cut(s)	159, 765, 1159, 1380, 1874, 2404
Bme1390I	CCNGG	4 cut(s)	282, 350, 707, 1262
BmeRI	GACNNNNNGTC	1 cut(s)	1420
BmgBI	CACGTC	1 cut(s)	1525
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	3 cut(s)	445, 1095, 1410
BmrFI	CCNGG	4 cut(s)	282, 350, 707, 1262
BmrI	ACTGGG	3 cut(s)	2126, 2229, 2334
BmsI	GCATC	6 cut(s)	394, 1275, 1567, 2017, 2407, 2637
BmuI	ACTGGG	3 cut(s)	2126, 2229, 2334
BpiI	GAAGAC	3 cut(s)	211, 1617, 1678
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	833
BpuMI	CCSGG	1 cut(s)	282
Bsa29I	ATCGAT	2 cut(s)	837, 2691
BsaAI	YACGTR	1 cut(s)	1110
BsaHI	GRCGYC	2 cut(s)	386, 444
BsaJI	CCNNGG	4 cut(s)	250, 630, 706, 1336
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 1073, 1103
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 355, 770, 1267
Bse118I	RCCGGY	1 cut(s)	2649
Bse1I	ACTGG	9 cut(s)	269, 301, 390, 1470, 1698, 2121, 2221, 2235, 2340
Bse21I	CCTNAGG	1 cut(s)	473
Bse3DI	GCAATG	7 cut(s)	1125, 1272, 1349, 1955, 2187, 2381, 2533
BseBI	CCWGG	3 cut(s)	350, 707, 1262
BseCI	ATCGAT	2 cut(s)	837, 2691
BseDI	CCNNGG	4 cut(s)	250, 630, 706, 1336
BseGI	GGATG	4 cut(s)	733, 2422, 2437, 2656
BseLI	CCNNNNNNNGG	4 cut(s)	244, 355, 770, 1267
BseMI	GCAATG	7 cut(s)	1125, 1272, 1349, 1955, 2187, 2381, 2533
BseMII	CTCAG	4 cut(s)	15, 487, 2607, 2675
BseNI	ACTGG	9 cut(s)	269, 301, 390, 1470, 1698, 2121, 2221, 2235, 2340
BseRI	GAGGAG	4 cut(s)	32, 35, 202, 308
BseSI	GKGCMC	1 cut(s)	2233
BseXI	GCAGC	4 cut(s)	169, 1144, 1365, 2414
BseYI	CCCAGC	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	1143
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	5, 248, 629
BshNI	GGYRCC	1 cut(s)	443
BshVI	ATCGAT	2 cut(s)	837, 2691
BsiHKAI	GWGCWC	4 cut(s)	420, 1017, 2233, 2622
BsiSI	CCGG	2 cut(s)	282, 2650
BslFI	GGGAC	1 cut(s)	1790
BslI	CCNNNNNNNGG	4 cut(s)	244, 355, 770, 1267
BsmAI	GTCTC	4 cut(s)	214, 1456, 2093, 2146
BsmFI	GGGAC	1 cut(s)	1790
BsmI	GAATGC	1 cut(s)	1605
BsnI	GGCC	3 cut(s)	5, 248, 629
Bsp1286I	GDGCHC	5 cut(s)	30, 420, 1017, 2233, 2622
Bsp1407I	TGTACA	1 cut(s)	2378
Bsp19I	CCATGG	1 cut(s)	1336
BspANI	GGCC	3 cut(s)	5, 248, 629
BspCNI	CTCAG	4 cut(s)	16, 486, 2608, 2674
BspDI	ATCGAT	2 cut(s)	837, 2691
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	3 cut(s)	445, 1095, 1410
BspPI	GGATC	5 cut(s)	358, 592, 697, 842, 2033
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	443
BspTI	CTTAAG	2 cut(s)	2012, 2588
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	7 cut(s)	1125, 1272, 1349, 1955, 2187, 2381, 2533
BsrFI	RCCGGY	1 cut(s)	2649
BsrGI	TGTACA	1 cut(s)	2378
BsrI	ACTGG	9 cut(s)	269, 301, 390, 1470, 1698, 2121, 2221, 2235, 2340
BssAI	RCCGGY	1 cut(s)	2649
BssECI	CCNNGG	4 cut(s)	250, 630, 706, 1336
BssNI	GRCGYC	2 cut(s)	386, 444
BssT1I	CCWWGG	1 cut(s)	1336
Bst2UI	CCWGG	3 cut(s)	350, 707, 1262
Bst6I	CTCTTC	6 cut(s)	41, 134, 444, 1884, 2484, 2489
BstACI	GRCGYC	2 cut(s)	386, 444
BstAFI	CTTAAG	2 cut(s)	2012, 2588
BstAPI	GCANNNNNTGC	1 cut(s)	2610
BstAUI	TGTACA	1 cut(s)	2378
BstBAI	YACGTR	1 cut(s)	1110
BstC8I	GCNNGC	3 cut(s)	432, 663, 2651
BstDEI	CTNAG	5 cut(s)	24, 473, 507, 2616, 2661
BstDSI	CCRYGG	1 cut(s)	1336
BstF5I	GGATG	4 cut(s)	733, 2422, 2437, 2656
BstFNI	CGCG	1 cut(s)	356
BstH2I	RGCGCY	3 cut(s)	163, 447, 2287
BstHHI	GCGC	5 cut(s)	162, 446, 920, 2019, 2286
BstMAI	GTCTC	4 cut(s)	214, 1456, 2093, 2146
BstMWI	GCNNNNNNNGC	4 cut(s)	577, 763, 1154, 2610
BstNI	CCWGG	3 cut(s)	350, 707, 1262
BstNSI	RCATGY	2 cut(s)	1030, 2023
BstSCI	CCNGG	4 cut(s)	280, 348, 705, 1260
BstSFI	CTRYAG	1 cut(s)	1728
BstSLI	GKGCMC	1 cut(s)	2233
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	4 cut(s)	169, 1144, 1365, 2414
BstV2I	GAAGAC	3 cut(s)	211, 1617, 1678
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
Bsu15I	ATCGAT	2 cut(s)	837, 2691
Bsu36I	CCTNAGG	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	3 cut(s)	5, 248, 629
BsuTUI	ATCGAT	2 cut(s)	837, 2691
BtgI	CCRYGG	1 cut(s)	1336
BtgZI	GCGATG	1 cut(s)	2435
BtrI	CACGTC	1 cut(s)	1525
BtsCI	GGATG	4 cut(s)	733, 2422, 2437, 2656
BtsI	GCAGTG	1 cut(s)	1271
BtsIMutI	CAGTG	5 cut(s)	294, 308, 1271, 1691, 2347
Cac8I	GCNNGC	3 cut(s)	432, 663, 2651
CfoI	GCGC	5 cut(s)	162, 446, 920, 2019, 2286
Cfr10I	RCCGGY	1 cut(s)	2649
Cfr13I	GGNCC	1 cut(s)	247
ClaI	ATCGAT	2 cut(s)	837, 2691
CseI	GACGC	2 cut(s)	375, 1986
Csp6I	GTAC	9 cut(s)	541, 897, 1111, 1132, 1216, 1733, 2238, 2379, 2523
CspCI	CAANNNNNGTGG	4 cut(s)	2394, 2429, 2449, 2484
CviQI	GTAC	9 cut(s)	541, 897, 1111, 1132, 1216, 1733, 2238, 2379, 2523
DdeI	CTNAG	5 cut(s)	24, 473, 507, 2616, 2661
DinI	GGCGCC	1 cut(s)	445
DraI	TTTAAA	2 cut(s)	964, 1803
DrdI	GACNNNNNNGTC	1 cut(s)	2452
DriI	GACNNNNNGTC	1 cut(s)	1420
DseDI	GACNNNNNNGTC	1 cut(s)	2452
EaeI	YGGCCR	2 cut(s)	3, 627
Eam1104I	CTCTTC	6 cut(s)	41, 134, 444, 1884, 2484, 2489
Eam1105I	GACNNNNNGTC	1 cut(s)	1420
EarI	CTCTTC	6 cut(s)	41, 134, 444, 1884, 2484, 2489
EciI	GGCGGA	2 cut(s)	109, 650
Ecl136II	GAGCTC	1 cut(s)	2620
Eco130I	CCWWGG	1 cut(s)	1336
Eco24I	GRGCYC	2 cut(s)	30, 2622
Eco53kI	GAGCTC	1 cut(s)	2620
Eco57I	CTGAAG	1 cut(s)	1697
Eco81I	CCTNAGG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	2620
EcoRII	CCWGG	3 cut(s)	348, 705, 1260
EcoT14I	CCWWGG	1 cut(s)	1336
EcoT22I	ATGCAT	1 cut(s)	1867
EcoT38I	GRGCYC	2 cut(s)	30, 2622
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	1336
FaqI	GGGAC	1 cut(s)	1790
FauI	CCCGC	4 cut(s)	82, 152, 423, 658
FauNDI	CATATG	1 cut(s)	2316
FbaI	TGATCA	1 cut(s)	2067
Fnu4HI	GCNGC	6 cut(s)	158, 764, 1158, 1379, 1873, 2403
FokI	GGATG	4 cut(s)	740, 2429, 2444, 2643
FriOI	GRGCYC	2 cut(s)	30, 2622
Fsp4HI	GCNGC	6 cut(s)	158, 764, 1158, 1379, 1873, 2403
GlaI	GCGC	5 cut(s)	161, 445, 919, 2018, 2285
GluI	GCNGC	6 cut(s)	158, 764, 1158, 1379, 1873, 2403
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	3 cut(s)	163, 447, 2287
HaeIII	GGCC	3 cut(s)	5, 248, 629
HapII	CCGG	2 cut(s)	282, 2650
HgaI	GACGC	2 cut(s)	375, 1986
HhaI	GCGC	5 cut(s)	162, 446, 920, 2019, 2286
Hin1I	GRCGYC	2 cut(s)	386, 444
Hin6I	GCGC	5 cut(s)	160, 444, 918, 2017, 2284
HinP1I	GCGC	5 cut(s)	160, 444, 918, 2017, 2284
HincII	GTYRAC	2 cut(s)	1947, 2094
HindII	GTYRAC	2 cut(s)	1947, 2094
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	8 cut(s)	255, 808, 955, 1184, 1490, 1940, 2453, 2688
HpaII	CCGG	2 cut(s)	282, 2650
HphI	GGTGA	2 cut(s)	460, 1296
Hpy166II	GTNNAC	6 cut(s)	687, 989, 1947, 2094, 2231, 2585
Hpy188I	TCNGA	9 cut(s)	254, 368, 834, 888, 1212, 1296, 2067, 2617, 2664
Hpy188III	TCNNGA	3 cut(s)	524, 1412, 2483
Hpy8I	GTNNAC	6 cut(s)	687, 989, 1947, 2094, 2231, 2585
HpyCH4IV	ACGT	6 cut(s)	624, 683, 1109, 1214, 1524, 2462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	577, 763, 1154, 2610
HpyF3I	CTNAG	5 cut(s)	24, 473, 507, 2616, 2661
HpySE526I	ACGT	6 cut(s)	624, 683, 1109, 1214, 1524, 2462
Hsp92I	GRCGYC	2 cut(s)	386, 444
HspAI	GCGC	5 cut(s)	160, 444, 918, 2017, 2284
KasI	GGCGCC	1 cut(s)	443
KroI	GCCGGC	1 cut(s)	2649
KroNI	GCCGGC	1 cut(s)	2651
Ksp22I	TGATCA	1 cut(s)	2067
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	88, 1145
Lsp1109I	GCAGC	4 cut(s)	169, 1144, 1365, 2414
LweI	GCATC	6 cut(s)	394, 1275, 1567, 2017, 2407, 2637
MaeII	ACGT	6 cut(s)	624, 683, 1109, 1214, 1524, 2462
MaeIII	GTNAC	2 cut(s)	620, 1105
MbiI	CCGCTC	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	5 cut(s)	30, 420, 1017, 2233, 2622
Mly113I	GGCGCC	1 cut(s)	444
MlyI	GAGTC	1 cut(s)	2462
MmeI	TCCRAC	2 cut(s)	911, 1059
Mph1103I	ATGCAT	1 cut(s)	1867
MroNI	GCCGGC	1 cut(s)	2649
MslI	CAYNNNNRTG	1 cut(s)	2226
MspCI	CTTAAG	2 cut(s)	2012, 2588
MspI	CCGG	2 cut(s)	282, 2650
MspR9I	CCNGG	4 cut(s)	282, 350, 707, 1262
MunI	CAATTG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	1605
MvaI	CCWGG	3 cut(s)	350, 707, 1262
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	4 cut(s)	577, 763, 1154, 2610
NaeI	GCCGGC	1 cut(s)	2651
NarI	GGCGCC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	1336
NdeI	CATATG	1 cut(s)	2316
NgoMIV	GCCGGC	1 cut(s)	2649
NlaIV	GGNNCC	3 cut(s)	445, 1095, 1410
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	1 cut(s)	1105
NsiI	ATGCAT	1 cut(s)	1867
NspI	RCATGY	2 cut(s)	1030, 2023
PciSI	GCTCTTC	1 cut(s)	134
PctI	GAATGC	1 cut(s)	1605
PdiI	GCCGGC	1 cut(s)	2651
PfeI	GAWTC	7 cut(s)	255, 808, 955, 1184, 1490, 1940, 2688
PflMI	CCANNNNNTGG	1 cut(s)	1267
PkrI	GCNGC	6 cut(s)	159, 765, 1159, 1380, 1874, 2404
PleI	GAGTC	1 cut(s)	2461
PluTI	GGCGCC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	2461
Ppu21I	YACGTR	1 cut(s)	1110
PshBI	ATTAAT	2 cut(s)	1331, 1988
PsiI	TTATAA	1 cut(s)	2355
Psp124BI	GAGCTC	1 cut(s)	2622
Psp6I	CCWGG	3 cut(s)	348, 705, 1260
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	3 cut(s)	348, 705, 1260
PspN4I	GGNNCC	3 cut(s)	445, 1095, 1410
PspPI	GGNCC	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	363
RsaI	GTAC	9 cut(s)	542, 898, 1112, 1133, 1217, 1734, 2239, 2380, 2524
RsaNI	GTAC	9 cut(s)	541, 897, 1111, 1132, 1216, 1733, 2238, 2379, 2523
RseI	CAYNNNNRTG	1 cut(s)	2226
SacI	GAGCTC	1 cut(s)	2622
SapI	GCTCTTC	1 cut(s)	134
SatI	GCNGC	6 cut(s)	158, 764, 1158, 1379, 1873, 2403
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	2462
ScrFI	CCNGG	4 cut(s)	282, 350, 707, 1262
SduI	GDGCHC	5 cut(s)	30, 420, 1017, 2233, 2622
SfaNI	GCATC	6 cut(s)	394, 1275, 1567, 2017, 2407, 2637
SfcI	CTRYAG	1 cut(s)	1728
SfoI	GGCGCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	2226
SmlI	CTYRAG	3 cut(s)	848, 2012, 2588
SmoI	CTYRAG	3 cut(s)	848, 2012, 2588
SspDI	GGCGCC	1 cut(s)	443
SspI	AATATT	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	2622
StyD4I	CCNGG	4 cut(s)	280, 348, 705, 1260
StyI	CCWWGG	1 cut(s)	1336
TaiI	ACGT	6 cut(s)	627, 686, 1112, 1217, 1527, 2465
TaqI	TCGA	6 cut(s)	234, 420, 456, 837, 1187, 2691
TatI	WGTACW	3 cut(s)	540, 1732, 2378
TauI	GCSGC	2 cut(s)	766, 1875
TfiI	GAWTC	7 cut(s)	255, 808, 955, 1184, 1490, 1940, 2688
TscAI	CASTG	5 cut(s)	301, 308, 1278, 1698, 2347
TseFI	GTSAC	1 cut(s)	1105
TseI	GCWGC	4 cut(s)	157, 1157, 1378, 2402
Tsp45I	GTSAC	1 cut(s)	1105
TspGWI	ACGGA	3 cut(s)	205, 989, 2688
TspRI	CASTG	5 cut(s)	301, 308, 1278, 1698, 2347
Van91I	CCANNNNNTGG	1 cut(s)	1267
Vha464I	CTTAAG	2 cut(s)	2012, 2588
VneI	GTGCAC	1 cut(s)	2229
VspI	ATTAAT	2 cut(s)	1331, 1988
XapI	RAATTY	1 cut(s)	369
XceI	RCATGY	2 cut(s)	1030, 2023
Zsp2I	ATGCAT	1 cut(s)	1867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.