Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Forward (+)

20845514 .. 20848231

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2718 bp

ATGATGAGAAAACCCATGGCCGTCATCTGCCACGCACCTGAACCCTTCCTCTTCCTCCTCCTCAAACCCTTCTCTTCCATTTCCTCCGCCGCCGCCGCTCCTTTTCCCCTCTCCAATGAACCGCACGATCTATCCTCCCAGCTCTTCGCCATTCTATCCCGCCCCAATTGGCAGCGCCACCCTTCCCTTAAACAACTAACCCCCTCCATATCCCCTTCCCATGTCTCCTCCGTCTTCGCTCTCAACCTCGACCCCCGAACCGCCCTCGCTTTCTTCAACTGGATAGCTCTTAAACCCGGATACAAGCACACCGTCCATTGCCACTCTTCTCTCCTCAACATTCTCCTCCCCAATGGGTTTCTCCAGGTCGCAGAAAAGATCCGAATTTCCATGATTAAGGCTTCCAGTTCCCCTCAAGATGCCCTTTTCGTGCTCAAGTTTTTGCGGGAGTTGAATGGTGCCGGAGAGTTCGAGTTCAAGCTCACCCTCAGGTGCTACAATTTTCTTCTTATGTCATTGTCTAAGTTTTCCCTGCTTCAAGATTTGAAAGCTTTGTATTTGGAGATGTTAGACGATATGGTTTCTCCAAATCTGCATACTTTTAATACCATGATCGATGCTTACTGTAAAGTGGGTAATGTGGCTGAGGCAGACTTGTATTTCAGTAAGATAGGGCAGGCGGGTTTCCACCCCGATACATTTACCTACACTTCTTTGATACTGGGACATTGTAGGAATAAGGATGTGGATAGTGGTTACAGGGTTTTTAAGCTAATGCCGCAAAAGGGTTGTCAAAGAAATGAAGTTTCCTATACTAATTTGATACATGGGTTTTGCGAGGCTGATCGGATTGATGAGGCTCTAAAGTTGTTTTCTCAAATGGGGGAGGATAATTGTTTTCCAACTGTGCGGACATACACAGTTCTTATTTGCGCCTTGTGTAAATTGGGAAGGAAATTAGAAGCTATGAATCTTTTCAAAGAGATGACGGACAAGGGTTGTGAACCAAATGTTCATACTTATACTGTGCTCATTGATAGCATGTGCAAGGAAAATAAGCTTGACGAGGCAAGAAACTTGCTAAACAAGATGTTGGAGAAAAGGTTGGTTCCTAATGTTGTCACTTACAACGCAATGATTGATGGGTACTGCAAGGAGGGAGCAGTTGAGGCTGCACTTGGTATTTTGGCTTTGATGGAATCGAGTAATTGTTATCCAAATGCTCGGACGTACAATGAATTGATTTGTGGGTTTTGTAAAAGGAAAAATATACACCAGGCAATGGCATTGCTTGGTAAGATGCTTGATCGGAAACTCTCACCAAGCCTATATACATACAACTCATTAATCCATGGGCAGTGTAAAATGGGTCATTTTGAGAGTGCTTACAGGTTGCTTAATTTGATGAAAGAAAGTGGTTTGGTTCCTGACCGATGGTCTTACAGTTCTCTCCTAGACACTCTCTGTAAGAGGGGCAGACTGGAAGAAGCTCATGCCCTGTTTGATTCTCTCAATGAGAAAGGCATAAAGTCAAATGACGTGATCTTTACTGCTTTGATTGATGGTTATTGTAAGGTTGGGAAAATCGACGATGCCCATTCTTTGTTTGATAGAATGCTTGCTGAAGACTGTTTGCCGAACTCATTCACTTACAATACCTTGATAGATGTGTTGTGCAGAGAAGGAAGACTGAAGGAAGCGTTATCACTGGTAGAAAAGATGTTAAGTATTGGCGTCAAAGCTACAACACATACTTATACAATTCTAATTAAACAAATGTTGAAGGAAGGGGACTTTGACCATGCTCATAGGCTTTTAAACCAGATGGTTAGTTCTGGTAATCAACCTGACCTGTTTACTTACACTACCTTTATTCATGCATATTGCGGCATAGGAAATGTAGAAGAGGCAGAGAAATTGATGATGAAGATGAATGAAGAAGGAATTATAGCAGATTCGTTGACTTACACATTGCTAATTGATGGATATGGGCGTATGAGATTAATTGATTGTGCATTTGATGTTCTTAAGCGCATGTTTGATGCTTGTTGTGATCCTTCGCATTATACATATTCCTTTCTGCTCAAACATCTTTCGAATGAAAAGTTGACGGGGACAAAGAATAATATGGTGGAAATTGATTTGATCCCAAAAGTCTCCTTAATTGATATTAGTGATGTGTGGAAGACAATGGATTTTGACATTGCTTTAGAGCTCTTTGAAAAAATGGCTGGACATGGTTGTGCACCCAGTACCAACACTTATGAAAAACTTATAGTAGGTCTTTGCAAAGAGAGGCGCTTGGAAGTAGCCCAGAGGTTATACAGTCATATGAGAGGAAGGAAAATTTCTCCAAGTGAGAATATTTATAATTCTCTTCTTAACTGTTGCTGTACATTGCAAAAGTATGGAGAGGCAGCAACCTTGGTGGATGCGATGATTGAGGATGGTTATTTACCGACACTGGAGTCCTCCACGTTGCTTGTATGCGGGCTTCTTGACGAAGAGAAGACTGAGAAGGCAAAAGCAATTTTTCGTACTTTGCTTCTTTGCGAATATAATTACGATGAAGTAGCTTGGAAAGTTCTCTTTGATGGTTTACTTAAGAGGGGTTTTGTCAATATATGCTCTGAGCTCATAAGCATCATGGAGAAGATGGGTTGCCAGCTTCATCCTCAGACATATTCAATGTTGATTGAGGGAATGGATGGTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

906

Amino Acids

102.3

Weight (kDa)

6.38

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	165 - 210	6.8e-07	PPR repeat family
PPR_1	PF12854	193 - 217	1.6e-07	PPR repeat
PPR_2	PF13041	196 - 245	1.2e-12	PPR repeat family
PPR_1	PF12854	228 - 259	7.9e-08	PPR repeat
PPR_2	PF13041	231 - 279	6.5e-14	PPR repeat family
PPR_long	PF17177	247 - 318	2.2e-06	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	249 - 359	9.5e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	262 - 294	9.6e-11	PPR repeat
PPR_2	PF13041	267 - 315	1.7e-16	PPR repeat family
PPR	PF01535	269 - 299	5e-07	PPR repeat
PPR_1	PF12854	298 - 330	6.1e-09	PPR repeat
PPR	PF01535	305 - 334	1.6e-07	PPR repeat
PPR_2	PF13041	309 - 350	2.5e-14	PPR repeat family
PPR_long	PF17177	322 - 412	4.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	325 - 383	8.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	332 - 364	1.3e-12	PPR repeat
PPR	PF01535	340 - 368	2.5e-06	PPR repeat
PPR_2	PF13041	341 - 382	4.2e-12	PPR repeat family
PPR_1	PF12854	368 - 400	6.3e-10	PPR repeat
PPR_2	PF13041	371 - 420	2e-17	PPR repeat family
PPR	PF01535	374 - 404	1.1e-07	PPR repeat
PPR_3	PF13812	396 - 450	7.6e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	397 - 505	2.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	403 - 434	3.2e-08	PPR repeat
PPR_2	PF13041	406 - 455	5.8e-14	PPR repeat family
PPR_3	PF13812	430 - 489	1.2e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	437 - 536	1.1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	439 - 470	9.1e-09	PPR repeat
PPR_2	PF13041	441 - 490	3.8e-15	PPR repeat family
PPR	PF01535	444 - 474	4.2e-07	PPR repeat
PPR_1	PF12854	473 - 502	5.9e-08	PPR repeat
PPR_long	PF17177	496 - 597	7.8e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	500 - 558	1.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	507 - 539	3.8e-10	PPR repeat
PPR_2	PF13041	512 - 560	2.2e-16	PPR repeat family
PPR	PF01535	514 - 544	9e-08	PPR repeat
PPR_1	PF12854	543 - 574	3e-13	PPR repeat
PPR_2	PF13041	546 - 593	6.5e-15	PPR repeat family
TPR_24	PF23276	548 - 639	6.4e-07	Fungal tetratrico peptide repeats
PPR	PF01535	549 - 579	1.5e-08	PPR repeat
PPR_long	PF17177	584 - 692	1.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	587 - 629	3.2e-11	PPR repeat family
PPR_3	PF13812	604 - 665	2.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	615 - 644	3.5e-08	PPR repeat
PPR	PF01535	619 - 649	2.1e-06	PPR repeat
PPR_2	PF13041	619 - 664	4e-12	PPR repeat family
PPR_3	PF13812	640 - 698	5.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	652 - 699	3.2e-08	PPR repeat family
PPR_long	PF17177	726 - 848	7.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	754 - 798	2.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2370
AasI	GACNNNNNNGTC	1 cut(s)	2467
AccB1I	GGYRCC	1 cut(s)	458
AccB7I	CCANNNNNTGG	1 cut(s)	1282
AccBSI	CCGCTC	1 cut(s)	98
AclWI	GGATC	3 cut(s)	373, 2048, 2140
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	384, 2346
AcuI	CTGAAG	2 cut(s)	1644, 1712
AcyI	GRCGYC	1 cut(s)	1734
AfaI	GTAC	5 cut(s)	1148, 1232, 2254, 2395, 2539
AfiI	CCNNNNNNNGG	2 cut(s)	785, 1282
AflII	CTTAAG	2 cut(s)	2027, 2603
AgsI	TTSAA	9 cut(s)	277, 454, 478, 539, 547, 979, 1783, 2222, 2688
AhdI	GACNNNNNGTC	1 cut(s)	1435
AjiI	CACGTC	1 cut(s)	1540
AjnI	CCWGG	2 cut(s)	363, 1275
Alw21I	GWGCWC	5 cut(s)	435, 1032, 2217, 2248, 2637
Alw26I	GTCTC	2 cut(s)	229, 2161
Alw44I	GTGCAC	1 cut(s)	2244
AlwI	GGATC	3 cut(s)	373, 2048, 2140
AoxI	GGCC	1 cut(s)	18
ApaLI	GTGCAC	1 cut(s)	2244
ApeKI	GCWGC	3 cut(s)	172, 1172, 2417
ApoI	RAATTY	2 cut(s)	384, 2346
ArsI	GACNNNNNNTTYG	2 cut(s)	775, 807
AseI	ATTAAT	2 cut(s)	1346, 2003
Asp700I	GAANNNNTTC	2 cut(s)	974, 1643
AspLEI	GCGC	4 cut(s)	177, 935, 2034, 2301
AspS9I	GGNCC	1 cut(s)	2711
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	475, 1311
AsuII	TTCGAA	1 cut(s)	2096
AvaII	GGWCC	1 cut(s)	2711
AxyI	CCTNAGG	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	2248
BaeI	ACNNNNGTAYC	2 cut(s)	815, 848
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	2 cut(s)	2217, 2637
BarI	GAAGNNNNNNTAC	2 cut(s)	2478, 2510
BbsI	GAAGAC	5 cut(s)	226, 1632, 1693, 2192, 2516
Bbv12I	GWGCWC	5 cut(s)	435, 1032, 2217, 2248, 2637
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	184, 1159, 2429
BceAI	ACGGC	1 cut(s)	5
BciT130I	CCWGG	2 cut(s)	365, 1277
BciVI	GTATCC	1 cut(s)	293
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	229, 2161
BfaI	CTAG	1 cut(s)	1454
BfoI	RGCGCY	2 cut(s)	178, 2302
BfrI	CTTAAG	2 cut(s)	2027, 2603
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	8 cut(s)	90, 93, 96, 173, 779, 1173, 1888, 2418
BlsI	GCNGC	8 cut(s)	91, 94, 97, 174, 780, 1174, 1889, 2419
Bme1390I	CCNGG	3 cut(s)	297, 365, 1277
Bme18I	GGWCC	1 cut(s)	2711
BmeRI	GACNNNNNGTC	1 cut(s)	1435
BmgBI	CACGTC	1 cut(s)	1540
BmgT120I	GGNCC	1 cut(s)	2711
BmiI	GGNNCC	3 cut(s)	460, 1110, 1425
BmrFI	CCNGG	3 cut(s)	297, 365, 1277
BmrI	ACTGGG	2 cut(s)	731, 2244
BmsI	GCATC	7 cut(s)	409, 607, 1290, 1582, 2032, 2422, 2652
BmuI	ACTGGG	2 cut(s)	731, 2244
BpiI	GAAGAC	5 cut(s)	226, 1632, 1693, 2192, 2516
BpmI	CTGGAG	2 cut(s)	347, 2486
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	2096
BpuEI	CTTGAG	2 cut(s)	399, 419
BpuMI	CCSGG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	1734
BsaJI	CCNNGG	3 cut(s)	15, 1351, 2424
BsaXI	ACNNNNNCTCC	2 cut(s)	1088, 1118
Bsc4I	CCNNNNNNNGG	2 cut(s)	785, 1282
Bse1I	ACTGG	7 cut(s)	284, 405, 726, 1485, 1713, 2250, 2469
Bse21I	CCTNAGG	1 cut(s)	488
Bse3DI	GCAATG	7 cut(s)	316, 1140, 1286, 1287, 1970, 2202, 2396
BseBI	CCWGG	2 cut(s)	365, 1277
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	3 cut(s)	15, 1351, 2424
BseGI	GGATG	5 cut(s)	748, 2437, 2452, 2671, 2713
BseLI	CCNNNNNNNGG	2 cut(s)	785, 1282
BseMI	GCAATG	7 cut(s)	316, 1140, 1286, 1287, 1970, 2202, 2396
BseMII	CTCAG	5 cut(s)	502, 636, 2505, 2622, 2690
BseNI	ACTGG	7 cut(s)	284, 405, 726, 1485, 1713, 2250, 2469
BseRI	GAGGAG	5 cut(s)	47, 50, 217, 323, 335
BseSI	GKGCMC	1 cut(s)	2248
BseXI	GCAGC	3 cut(s)	184, 1159, 2429
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	2 cut(s)	1158, 1696
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	458
BshVI	ATCGAT	1 cut(s)	615
BsiHKAI	GWGCWC	5 cut(s)	435, 1032, 2217, 2248, 2637
BsiSI	CCGG	2 cut(s)	297, 462
BslFI	GGGAC	3 cut(s)	738, 1805, 2128
BslI	CCNNNNNNNGG	2 cut(s)	785, 1282
BsmAI	GTCTC	2 cut(s)	229, 2161
BsmFI	GGGAC	3 cut(s)	738, 1805, 2128
BsmI	GAATGC	1 cut(s)	1620
BsnI	GGCC	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	2096
Bsp1286I	GDGCHC	5 cut(s)	435, 1032, 2217, 2248, 2637
Bsp1407I	TGTACA	1 cut(s)	2393
Bsp143I	GATC	8 cut(s)	127, 378, 612, 844, 1306, 1542, 2053, 2145
Bsp19I	CCATGG	2 cut(s)	15, 1351
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	5 cut(s)	501, 637, 2506, 2623, 2689
BspDI	ATCGAT	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	460, 1110, 1425
BspPI	GGATC	3 cut(s)	373, 2048, 2140
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	2096
BspT107I	GGYRCC	1 cut(s)	458
BspTI	CTTAAG	2 cut(s)	2027, 2603
BsrBI	CCGCTC	1 cut(s)	98
BsrDI	GCAATG	7 cut(s)	316, 1140, 1286, 1287, 1970, 2202, 2396
BsrGI	TGTACA	1 cut(s)	2393
BsrI	ACTGG	7 cut(s)	284, 405, 726, 1485, 1713, 2250, 2469
BssECI	CCNNGG	3 cut(s)	15, 1351, 2424
BssMI	GATC	8 cut(s)	127, 378, 612, 844, 1306, 1542, 2053, 2145
BssNI	GRCGYC	1 cut(s)	1734
BssT1I	CCWWGG	3 cut(s)	15, 1351, 2424
Bst2UI	CCWGG	2 cut(s)	365, 1277
Bst4CI	ACNGT	9 cut(s)	313, 626, 907, 922, 1027, 1445, 1631, 2327, 2387
Bst6I	CTCTTC	7 cut(s)	56, 79, 149, 331, 1899, 2382, 2499
BstACI	GRCGYC	1 cut(s)	1734
BstAFI	CTTAAG	2 cut(s)	2027, 2603
BstAUI	TGTACA	1 cut(s)	2393
BstBI	TTCGAA	1 cut(s)	2096
BstC8I	GCNNGC	4 cut(s)	678, 1620, 2492, 2666
BstDEI	CTNAG	6 cut(s)	488, 522, 645, 2514, 2631, 2676
BstDSI	CCRYGG	2 cut(s)	15, 1351
BstF5I	GGATG	5 cut(s)	748, 2437, 2452, 2671, 2713
BstH2I	RGCGCY	2 cut(s)	178, 2302
BstHHI	GCGC	4 cut(s)	177, 935, 2034, 2301
BstKTI	GATC	8 cut(s)	130, 381, 615, 847, 1309, 1545, 2056, 2148
BstMAI	GTCTC	2 cut(s)	229, 2161
BstMBI	GATC	8 cut(s)	127, 378, 612, 844, 1306, 1542, 2053, 2145
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 778, 1169
BstNI	CCWGG	2 cut(s)	365, 1277
BstNSI	RCATGY	2 cut(s)	1045, 2038
BstSCI	CCNGG	3 cut(s)	295, 363, 1275
BstSLI	GKGCMC	1 cut(s)	2248
BstV1I	GCAGC	3 cut(s)	184, 1159, 2429
BstV2I	GAAGAC	5 cut(s)	226, 1632, 1693, 2192, 2516
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	615
Bsu36I	CCTNAGG	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	615
BtgI	CCRYGG	2 cut(s)	15, 1351
BtgZI	GCGATG	1 cut(s)	2450
BtrI	CACGTC	1 cut(s)	1540
BtsCI	GGATG	5 cut(s)	748, 2437, 2452, 2671, 2713
BtsI	GCAGTG	1 cut(s)	1364
BtsIMutI	CAGTG	3 cut(s)	1364, 1706, 2462
Cac8I	GCNNGC	4 cut(s)	678, 1620, 2492, 2666
CfoI	GCGC	4 cut(s)	177, 935, 2034, 2301
Cfr13I	GGNCC	1 cut(s)	2711
ClaI	ATCGAT	1 cut(s)	615
CseI	GACGC	1 cut(s)	1723
Csp6I	GTAC	5 cut(s)	1147, 1231, 2253, 2394, 2538
CspCI	CAANNNNNGTGG	4 cut(s)	2409, 2444, 2464, 2499
CviQI	GTAC	5 cut(s)	1147, 1231, 2253, 2394, 2538
DdeI	CTNAG	6 cut(s)	488, 522, 645, 2514, 2631, 2676
DpnI	GATC	8 cut(s)	129, 380, 614, 846, 1308, 1544, 2055, 2147
DpnII	GATC	8 cut(s)	127, 378, 612, 844, 1306, 1542, 2053, 2145
DraI	TTTAAA	1 cut(s)	1818
DrdI	GACNNNNNNGTC	1 cut(s)	2467
DriI	GACNNNNNGTC	1 cut(s)	1435
DseDI	GACNNNNNNGTC	1 cut(s)	2467
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	7 cut(s)	56, 79, 149, 331, 1899, 2382, 2499
Eam1105I	GACNNNNNGTC	1 cut(s)	1435
EarI	CTCTTC	7 cut(s)	56, 79, 149, 331, 1899, 2382, 2499
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	2 cut(s)	2215, 2635
Eco130I	CCWWGG	3 cut(s)	15, 1351, 2424
Eco24I	GRGCYC	2 cut(s)	2217, 2637
Eco47I	GGWCC	1 cut(s)	2711
Eco53kI	GAGCTC	2 cut(s)	2215, 2635
Eco57I	CTGAAG	2 cut(s)	1644, 1712
Eco81I	CCTNAGG	1 cut(s)	488
EcoICRI	GAGCTC	2 cut(s)	2215, 2635
EcoRII	CCWGG	2 cut(s)	363, 1275
EcoT14I	CCWWGG	3 cut(s)	15, 1351, 2424
EcoT22I	ATGCAT	1 cut(s)	1882
EcoT38I	GRGCYC	2 cut(s)	2217, 2637
ErhI	CCWWGG	3 cut(s)	15, 1351, 2424
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	3 cut(s)	738, 1805, 2128
FauI	CCCGC	4 cut(s)	167, 438, 673, 2483
FauNDI	CATATG	1 cut(s)	2331
Fnu4HI	GCNGC	8 cut(s)	90, 93, 96, 173, 779, 1173, 1888, 2418
FokI	GGATG	4 cut(s)	755, 2444, 2459, 2658
FriOI	GRGCYC	2 cut(s)	2217, 2637
Fsp4HI	GCNGC	8 cut(s)	90, 93, 96, 173, 779, 1173, 1888, 2418
FspBI	CTAG	1 cut(s)	1454
GlaI	GCGC	4 cut(s)	176, 934, 2033, 2300
GluI	GCNGC	8 cut(s)	90, 93, 96, 173, 779, 1173, 1888, 2418
GsaI	CCCAGC	1 cut(s)	142
GsuI	CTGGAG	2 cut(s)	347, 2486
HaeII	RGCGCY	2 cut(s)	178, 2302
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	2 cut(s)	297, 462
HgaI	GACGC	1 cut(s)	1723
HhaI	GCGC	4 cut(s)	177, 935, 2034, 2301
Hin1I	GRCGYC	1 cut(s)	1734
Hin6I	GCGC	4 cut(s)	175, 933, 2032, 2299
HinP1I	GCGC	4 cut(s)	175, 933, 2032, 2299
HincII	GTYRAC	2 cut(s)	1962, 2109
HindII	GTYRAC	2 cut(s)	1962, 2109
HindIII	AAGCTT	2 cut(s)	549, 1058
HinfI	GANTC	5 cut(s)	970, 1199, 1505, 1955, 2468
HpaII	CCGG	2 cut(s)	297, 462
HphI	GGTGA	2 cut(s)	475, 1311
Hpy166II	GTNNAC	6 cut(s)	1004, 1857, 1962, 2109, 2246, 2600
Hpy188I	TCNGA	6 cut(s)	383, 849, 1227, 1311, 2632, 2679
Hpy188III	TCNNGA	4 cut(s)	416, 539, 1427, 2498
Hpy8I	GTNNAC	6 cut(s)	1004, 1857, 1962, 2109, 2246, 2600
Hpy99I	CGWCG	1 cut(s)	1592
HpyCH4III	ACNGT	9 cut(s)	313, 626, 907, 922, 1027, 1445, 1631, 2327, 2387
HpyCH4IV	ACGT	3 cut(s)	1229, 1539, 2477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 778, 1169
HpyF3I	CTNAG	6 cut(s)	488, 522, 645, 2514, 2631, 2676
HpySE526I	ACGT	3 cut(s)	1229, 1539, 2477
Hsp92I	GRCGYC	1 cut(s)	1734
HspAI	GCGC	4 cut(s)	175, 933, 2032, 2299
Kzo9I	GATC	8 cut(s)	127, 378, 612, 844, 1306, 1542, 2053, 2145
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	103, 1160
Lsp1109I	GCAGC	3 cut(s)	184, 1159, 2429
LweI	GCATC	7 cut(s)	409, 607, 1290, 1582, 2032, 2422, 2652
MaeI	CTAG	1 cut(s)	1454
MaeII	ACGT	3 cut(s)	1229, 1539, 2477
MaeIII	GTNAC	2 cut(s)	755, 1120
MalI	GATC	8 cut(s)	129, 380, 614, 846, 1308, 1544, 2055, 2147
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	8 cut(s)	127, 378, 612, 844, 1306, 1542, 2053, 2145
MfeI	CAATTG	1 cut(s)	166
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	5 cut(s)	435, 1032, 2217, 2248, 2637
MlyI	GAGTC	1 cut(s)	2477
MmeI	TCCRAC	2 cut(s)	926, 1074
Mph1103I	ATGCAT	1 cut(s)	1882
MroXI	GAANNNNTTC	2 cut(s)	974, 1643
MslI	CAYNNNNRTG	1 cut(s)	2241
MspCI	CTTAAG	2 cut(s)	2027, 2603
MspI	CCGG	2 cut(s)	297, 462
MspR9I	CCNGG	3 cut(s)	297, 365, 1277
MunI	CAATTG	1 cut(s)	166
Mva1269I	GAATGC	1 cut(s)	1620
MvaI	CCWGG	2 cut(s)	365, 1277
MwoI	GCNNNNNNNGC	3 cut(s)	95, 778, 1169
NciI	CCSGG	1 cut(s)	297
NcoI	CCATGG	2 cut(s)	15, 1351
NdeI	CATATG	1 cut(s)	2331
NdeII	GATC	8 cut(s)	127, 378, 612, 844, 1306, 1542, 2053, 2145
NlaIV	GGNNCC	3 cut(s)	460, 1110, 1425
NmuCI	GTSAC	1 cut(s)	1120
NsiI	ATGCAT	1 cut(s)	1882
NspI	RCATGY	2 cut(s)	1045, 2038
NspV	TTCGAA	1 cut(s)	2096
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	1620
PdmI	GAANNNNTTC	2 cut(s)	974, 1643
PfeI	GAWTC	4 cut(s)	970, 1199, 1505, 1955
PflMI	CCANNNNNTGG	1 cut(s)	1282
PkrI	GCNGC	8 cut(s)	91, 94, 97, 174, 780, 1174, 1889, 2419
PleI	GAGTC	1 cut(s)	2476
PpsI	GAGTC	1 cut(s)	2476
PshBI	ATTAAT	2 cut(s)	1346, 2003
PsiI	TTATAA	1 cut(s)	2370
Psp124BI	GAGCTC	2 cut(s)	2217, 2637
Psp6I	CCWGG	2 cut(s)	363, 1275
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	2 cut(s)	363, 1275
PspN4I	GGNNCC	3 cut(s)	460, 1110, 1425
PspPI	GGNCC	1 cut(s)	2711
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	5 cut(s)	1148, 1232, 2254, 2395, 2539
RsaNI	GTAC	5 cut(s)	1147, 1231, 2253, 2394, 2538
RseI	CAYNNNNRTG	1 cut(s)	2241
SacI	GAGCTC	2 cut(s)	2217, 2637
SapI	GCTCTTC	1 cut(s)	149
SatI	GCNGC	8 cut(s)	90, 93, 96, 173, 779, 1173, 1888, 2418
Sau3AI	GATC	8 cut(s)	127, 378, 612, 844, 1306, 1542, 2053, 2145
Sau96I	GGNCC	1 cut(s)	2711
SchI	GAGTC	1 cut(s)	2477
ScrFI	CCNGG	3 cut(s)	297, 365, 1277
SduI	GDGCHC	5 cut(s)	435, 1032, 2217, 2248, 2637
SfaNI	GCATC	7 cut(s)	409, 607, 1290, 1582, 2032, 2422, 2652
SfuI	TTCGAA	1 cut(s)	2096
SinI	GGWCC	1 cut(s)	2711
SmiMI	CAYNNNNRTG	1 cut(s)	2241
SmlI	CTYRAG	4 cut(s)	414, 434, 2027, 2603
SmoI	CTYRAG	4 cut(s)	414, 434, 2027, 2603
SspI	AATATT	1 cut(s)	2365
SspMI	CTAG	1 cut(s)	1454
SstI	GAGCTC	2 cut(s)	2217, 2637
StyD4I	CCNGG	3 cut(s)	295, 363, 1275
StyI	CCWWGG	3 cut(s)	15, 1351, 2424
TaaI	ACNGT	9 cut(s)	313, 626, 907, 922, 1027, 1445, 1631, 2327, 2387
TaiI	ACGT	3 cut(s)	1232, 1542, 2480
TaqI	TCGA	6 cut(s)	249, 471, 615, 1202, 1587, 2096
TaqII	GACCGA	1 cut(s)	1446
TatI	WGTACW	1 cut(s)	2393
TauI	GCSGC	5 cut(s)	92, 95, 98, 781, 1890
TfiI	GAWTC	4 cut(s)	970, 1199, 1505, 1955
TscAI	CASTG	3 cut(s)	1364, 1713, 2469
TseFI	GTSAC	1 cut(s)	1120
TseI	GCWGC	3 cut(s)	172, 1172, 2417
Tsp45I	GTSAC	1 cut(s)	1120
TspGWI	ACGGA	3 cut(s)	220, 1004, 2703
TspRI	CASTG	3 cut(s)	1364, 1713, 2469
Van91I	CCANNNNNTGG	1 cut(s)	1282
Vha464I	CTTAAG	2 cut(s)	2027, 2603
VneI	GTGCAC	1 cut(s)	2244
VpaK11BI	GGWCC	1 cut(s)	2711
VspI	ATTAAT	2 cut(s)	1346, 2003
XapI	RAATTY	2 cut(s)	384, 2346
XceI	RCATGY	2 cut(s)	1045, 2038
XmnI	GAANNNNTTC	2 cut(s)	974, 1643
XspI	CTAG	1 cut(s)	1454
Zsp2I	ATGCAT	1 cut(s)	1882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.