Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001743

Physical Location & Seq

Genomic Coordinates Reverse (-)

18752881 .. 18755571

Gene Structure 2691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG099700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2691 bp

ATGAGGAGAAAACCCATTCTCCCAAGCAGCAGCAGGGCCTTGTTTCTCCACCTCAATTCCAAGCGCTTCTTCTCCTTCACTGCTTCCGCTTCCGCTTCTGAGCCAGTCCTCGACGATCTCCCCTCTCAGCTCTTGTCCATCCTCTCCCAACCCAATTGGCAAAGACACCCCTCCCTCAAACCCCTAATCCCCTCCATATCCCCCTCCCATGTCTCCTCCCTCTTCTCCCTCAACCACCACCTCCCTCCCCAAACCGCCCTCGCCTTCTTCAACTGGATCGCCCTCAAACCCAACTTCACCCACACCGTCCACTCCCACTCTTCTCTCCTCTCCCTTCTCCTCCCCAACCCTTCCTTCCTCTCCGTCGCCGAAAAGATCCGCATTTCCATGATCAAGTCCTCCACCTGCCCCCCTGACGCCCTCTTCGTCCTCCACCATCTCCGCTACCTGAACAAGACCCACTTCAAGCTCACCCTCAGGTCATACAACTTTCTTCTCATGTCATTGTCCAAGTTTTCGCTGTTTGATGATTTAAAAACTGTGTATATGGAGATTTTGGAGGATAAGGTTTCCCCCAATTTGCATACATTTAACACCATGGTCAATGCTTATTGTAAATTGGGGAATTTGGCTGAGGCAGAGGTGTATTTCAGTAAGATAGGGCAGGCCGGTTTGCGGCCGGATACTTTTAGCTACACGTCTTTGATACTGGGGCATTGTAGGAATAAGGATGTGGACAGTGCTTATAGGGTGTTTAGGGTAATGCCGCAGAAGGAGTGTCGGAGAAATGAGGTTTCGTATACCAATCTAATACATGGGTTGTGTGAGGCGGATCGGATTGATGAGGCTTTTAAGTTGTTTTCGCAGATGGGGGAGGATGATTGTCAGCCGACTGTCCGCACGTTTACAGTTCTTATTTCTGCATTTTGTAGATTGGGGAAGAAATCAGAAGGAATGAAGTTGTTTAGAGAGATGAGGGAAAAGGGTTGTCAACCGAATGCTCATACTTATACGGTGCTCATTGATAGTATGTGCAAGGAGAATAAGCTAGGTGAGGCTAGGAAGTTGCTGAATGAGATGTTGGAGAAACGGTTGGTTCCTACTGTTGTCACGTACAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCAGTTGAGGCTGCAATTGATATTAAGGCTTTGATGGAATCAAATAAATGTTGTCCAAATGCTCGAACGTACAATGAATTAATTTTTGGGTTTTGTAAAAGGAAAGATGTAAACCAGGCGATGGCATTGCTCGCTAAGATGCTCGATCTGAAGCTCTCACCTAGTGTGATTACGTATAACTCATTAATACATGGCCACTGTAAAGCAGGTGATATAGACTGTGCTTATAGGTTGCTTGATTTGATGAAGGACAGTGGTTTGGTTCCTGACCAGTGGACCTATAGTGTTTTTATAGACAGTCTTTGTAAGAGTGGGAGACTAGAAGAAGCTCATGCCCTGTTTGATTCTCTTCAGGAGAAAGGCGTAAAGTCAAATGAAGTGACATTTACTGCTTTGATTGATGGTTACTGCAAGGTGGGGAAAATTAATGATGCCCATACCTTGTTTGATAGGATGCTTACAGAGGGCTGTAACCCGAACACATGCACTTACAATACATTGGTAGATGGATTGTGCAAAGAAGGAAAATTGCAGGATGCAATATTACTGGTGGAGAAGATGTTAAGTACGGGCCTGACGCATGCACCACATACTTATTCTATACTGATCAAACATATGCTGAAAGAAGGGGACTTCGGCCATGCTCATAGACTGTTCAACCAGATGGTTTGTTCTGGTAGTAAACCGGACGTATTTATTTACACTTCGTTTATTCATGCATATTGCAGCATAGGGGATATAGAAGAGGCAGAAAAGCTGATGGTTAAGATGAGTGAAGAAGGAATTAGAGCAGATTCGTTGACTTACACATTATTGATTAACACATATGGACGTATGGGACTACTAGATTCTGCATTTGGTGTTCTTAAGCGCATGTTTGATGCTTGCTGCGATCCTTCTCACTATACCTATTCTTTCCTGATCAAACATCTTTTGCGCTCGAAGACGAATGACGATATTGTGAGACTTGATTTGGCCTCAAGCTTCATTGATATTGCTGATGTATGGAAGACAATGGATTATCAAAATGCTTTAGATCTGTTTGACAAGATGGTTGAACATGGCTGTGCACCCAATGGCAACACATATGAAAAGCTTATAATAGGTCTTTGCAAAGAGGGGCGCTTGGAAGTAGCCCAGAGGCTATATGTTCATATGAGAGATGGGCGGATTTCTCCCAGCCAGGATATTTATCATTCTCTTATTAATTGTTGCTGTCAGTTGCAAGTGTATGGAGAGGCGGCAAACCTGCTGGATACGATGATTGAGGATGGTTATTTACCAACATTAGAGTCTTCCAAGTTGCTTGTATGTGGGCTATTCATTGAGGAGAATATCGAGAAGGCAAAAGCCGTTTTCTGTAGTTTGCTCCGTTGTGAGTATAACTTTGACGAAGTAGCTTGGAAAGTTCTCCATGATGGTTTACTTAAGAGGGGTCTTGTCAATAGATGCTCTGAGTTGATAACCATCATGGAGCAGATGGGTTGCAAGCTTCATCCTCAGACATATTCAATGCTGATTGAGGGAATTGATGGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

896

Amino Acids

101.23

Weight (kDa)

6.79

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	190 - 217	3.2e-07	PPR repeat
PPR_2	PF13041	192 - 241	7.7e-11	PPR repeat family
PPR_1	PF12854	224 - 255	2.9e-09	PPR repeat
PPR_2	PF13041	227 - 275	1.8e-13	PPR repeat family
PPR_long	PF17177	243 - 313	1.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	258 - 290	5.6e-10	PPR repeat
PPR_2	PF13041	263 - 311	2.8e-16	PPR repeat family
PPR	PF01535	265 - 295	1.7e-06	PPR repeat
PPR_3	PF13812	285 - 343	2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	294 - 326	1.5e-08	PPR repeat
PPR	PF01535	301 - 330	3.9e-08	PPR repeat
PPR_2	PF13041	305 - 346	2.6e-14	PPR repeat family
PPR_long	PF17177	317 - 399	2.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	320 - 379	1.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	328 - 360	1.6e-11	PPR repeat
PPR	PF01535	336 - 364	2.7e-06	PPR repeat
PPR_2	PF13041	338 - 373	6e-08	PPR repeat family
PPR_3	PF13812	355 - 411	2.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	364 - 391	2.4e-09	PPR repeat
PPR_2	PF13041	367 - 416	7.6e-16	PPR repeat family
PPR	PF01535	370 - 400	7.5e-06	PPR repeat
PPR_long	PF17177	395 - 479	2.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	400 - 430	1.1e-08	PPR repeat
PPR_2	PF13041	402 - 451	9.1e-14	PPR repeat family
PPR_3	PF13812	426 - 482	3.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	435 - 466	5.4e-13	PPR repeat
PPR_2	PF13041	437 - 486	5.8e-17	PPR repeat family
PPR	PF01535	440 - 470	6.8e-08	PPR repeat
PPR_1	PF12854	469 - 498	2.8e-09	PPR repeat
PPR	PF01535	476 - 505	1.5e-06	PPR repeat
PPR_2	PF13041	480 - 521	5.7e-12	PPR repeat family
PPR_long	PF17177	490 - 594	7.8e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	493 - 604	9e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	496 - 551	6e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	503 - 535	4.8e-11	PPR repeat
PPR_2	PF13041	508 - 556	9.1e-18	PPR repeat family
PPR	PF01535	510 - 540	3.3e-08	PPR repeat
PPR_1	PF12854	539 - 570	1e-13	PPR repeat
PPR_2	PF13041	542 - 588	3.9e-11	PPR repeat family
PPR	PF01535	546 - 574	3.6e-06	PPR repeat
PPR_2	PF13041	581 - 618	1.1e-07	PPR repeat family
PPR_3	PF13812	600 - 661	2.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	609 - 641	5e-09	PPR repeat
PPR_2	PF13041	612 - 659	1e-12	PPR repeat family
PPR	PF01535	616 - 645	2.1e-06	PPR repeat
PPR_3	PF13812	636 - 692	7.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	648 - 694	2.7e-08	PPR repeat family
PPR_long	PF17177	717 - 849	8.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	723 - 755	1.1e-06	PPR repeat family
PPR_3	PF13812	730 - 788	1.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	745 - 790	1.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77340 AT5G65560 AT5G65560 AT5G65560
fragaria_vesca	FvH4_1g06430 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_2g11090 FvH4_7g04271 FvH4_7g04271
malus_domestica	MD03G1170600.v1.1 MD08G1245900.v1.1 MD11G1188000.v1.1 MD15G1441200.v1.1
prunus_persica	Prupe.1G583300_v2.0.a1 Prupe.4G256300_v2.0.a1
pyrus_communis	pycom03g12750 pycom08g21340 pycom15g38890 pycom15g38910
rosa_chinensis	RchiOBHm_Chr1g0329241 RchiOBHm_Chr2g0092171
rosa_laevigata	RLG00000016282 RLG00000029907
rosa_multiflora	Rmu_co8315275.1_g000001 Rmu_sc0000203.1_g000005 Rmu_sc0000524.1_g000014 Rmu_sc0010272.1_g000004 Rmu_sc0013552.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149410 Rroxscaffold_4G00321300
rosa_rugosa	Rorug01G0077300 Rorug01G0077300 Rorug02G0023500
rosa_samantha	Rh1AG096400 Rh1BG077100 Rh1CG093100 Rh1CG107900 Rh1DG099700 Rh1DG116600 Rh2AG069100 Rh2BG068600 Rh2CG069700 Rh2DG067700
rosa_wichuraiana	Rw1G007460 Rw2G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2249
AarI	CACCTGC	2 cut(s)	413, 1346
Acc36I	ACCTGC	3 cut(s)	413, 1346, 2406
AccB7I	CCANNNNNTGG	1 cut(s)	1270
AccI	GTMKAC	1 cut(s)	800
AclWI	GGATC	4 cut(s)	284, 370, 840, 2036
AcoI	YGGCCR	3 cut(s)	677, 1342, 1786
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	2 cut(s)	1319, 1484
AcyI	GRCGYC	1 cut(s)	417
AdeI	CACNNNGTG	1 cut(s)	1313
AfaI	GTAC	3 cut(s)	1115, 1220, 1717
AfeI	AGCGCT	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	675, 1270
AflII	CTTAAG	2 cut(s)	2015, 2576
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	5 cut(s)	271, 466, 1807, 2207, 2661
AjiI	CACGTC	1 cut(s)	699
AjnI	CCWGG	2 cut(s)	1263, 2331
AjuI	GAANNNNNNNTTGG	8 cut(s)	53, 85, 338, 370, 1064, 1096, 1218, 1250
Alw21I	GWGCWC	2 cut(s)	1020, 2221
Alw26I	GTCTC	3 cut(s)	217, 1459, 2107
Alw44I	GTGCAC	1 cut(s)	2217
AlwI	GGATC	4 cut(s)	284, 370, 840, 2036
Aor51HI	AGCGCT	1 cut(s)	65
AoxI	GGCC	7 cut(s)	36, 666, 677, 1342, 1720, 1786, 2124
ApaLI	GTGCAC	1 cut(s)	2217
ApeKI	GCWGC	5 cut(s)	27, 30, 1160, 1875, 2037
ApoI	RAATTY	1 cut(s)	625
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AseI	ATTAAT	4 cut(s)	1229, 1334, 1575, 2355
AspLEI	GCGC	4 cut(s)	66, 2022, 2088, 2274
AspS9I	GGNCC	3 cut(s)	36, 1425, 1720
AsuHPI	GGTGA	5 cut(s)	289, 463, 1064, 1299, 1370
AvaII	GGWCC	1 cut(s)	1425
AxyI	CCTNAGG	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	2221
BalI	TGGCCA	1 cut(s)	1344
BbsI	GAAGAC	3 cut(s)	2099, 2165, 2436
Bbv12I	GWGCWC	2 cut(s)	1020, 2221
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	5 cut(s)	39, 42, 1147, 1887, 2024
BceAI	ACGGC	1 cut(s)	2486
BcgI	CGANNNNNNTGC	2 cut(s)	1258, 1292
BciT130I	CCWGG	2 cut(s)	1265, 2333
BciVI	GTATCC	2 cut(s)	676, 2398
BclI	TGATCA	3 cut(s)	390, 1755, 2070
BcoDI	GTCTC	3 cut(s)	217, 1459, 2107
BfaI	CTAG	5 cut(s)	1049, 1059, 1311, 1469, 1994
BfmI	CTRYAG	2 cut(s)	1429, 2509
BfoI	RGCGCY	2 cut(s)	67, 2275
BfrI	CTTAAG	2 cut(s)	2015, 2576
BfuAI	ACCTGC	3 cut(s)	413, 1346, 2406
BfuI	GTATCC	2 cut(s)	676, 2398
BglII	AGATCT	1 cut(s)	2185
BisI	GCNGC	8 cut(s)	28, 31, 677, 767, 1161, 1876, 2038, 2391
BlsI	GCNGC	8 cut(s)	29, 32, 678, 768, 1162, 1877, 2039, 2392
Bme1390I	CCNGG	2 cut(s)	1265, 2333
Bme18I	GGWCC	1 cut(s)	1425
BmgBI	CACGTC	1 cut(s)	699
BmgT120I	GGNCC	3 cut(s)	36, 1425, 1720
BmiI	GGNNCC	2 cut(s)	1098, 1413
BmrFI	CCNGG	2 cut(s)	1265, 2333
BmrI	ACTGGG	1 cut(s)	719
BmsI	GCATC	6 cut(s)	1278, 1570, 1593, 1675, 2020, 2588
BmuI	ACTGGG	1 cut(s)	719
BpiI	GAAGAC	3 cut(s)	2099, 2165, 2436
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	2113
BsaAI	YACGTR	2 cut(s)	1113, 1323
BsaBI	GATNNNNATC	2 cut(s)	2340, 2615
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	1834
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 1076, 1106, 1694, 1724
Bsc4I	CCNNNNNNNGG	2 cut(s)	675, 1270
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	5 cut(s)	104, 278, 714, 1420, 1701
Bse21I	CCTNAGG	1 cut(s)	476
Bse3DI	GCAATG	1 cut(s)	1274
Bse8I	GATNNNNATC	2 cut(s)	2340, 2615
BseBI	CCWGG	2 cut(s)	1265, 2333
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	7 cut(s)	138, 736, 883, 1608, 1690, 2425, 2644
BseJI	GATNNNNATC	2 cut(s)	2340, 2615
BseLI	CCNNNNNNNGG	2 cut(s)	675, 1270
BseMI	GCAATG	1 cut(s)	1274
BseMII	CTCAG	6 cut(s)	90, 140, 490, 624, 2595, 2663
BseNI	ACTGG	5 cut(s)	104, 278, 714, 1420, 1701
BseRI	GAGGAG	5 cut(s)	19, 205, 317, 329, 2492
BseSI	GKGCMC	1 cut(s)	2221
BseX3I	CGGCCG	1 cut(s)	677
BseXI	GCAGC	5 cut(s)	39, 42, 1147, 1887, 2024
BseYI	CCCAGC	1 cut(s)	2327
Bsh1285I	CGRYCG	1 cut(s)	680
BshFI	GGCC	7 cut(s)	38, 668, 679, 1344, 1722, 1788, 2126
BsiEI	CGRYCG	1 cut(s)	680
BsiHKAI	GWGCWC	2 cut(s)	1020, 2221
BsiSI	CCGG	3 cut(s)	669, 680, 1835
BslFI	GGGAC	2 cut(s)	1793, 2001
BslI	CCNNNNNNNGG	2 cut(s)	675, 1270
BsmAI	GTCTC	3 cut(s)	217, 1459, 2107
BsmFI	GGGAC	2 cut(s)	1793, 2001
BsmI	GAATGC	1 cut(s)	1003
BsnI	GGCC	7 cut(s)	38, 668, 679, 1344, 1722, 1788, 2126
Bsp1286I	GDGCHC	2 cut(s)	1020, 2221
Bsp19I	CCATGG	1 cut(s)	597
BspANI	GGCC	7 cut(s)	38, 668, 679, 1344, 1722, 1788, 2126
BspCNI	CTCAG	6 cut(s)	91, 139, 489, 625, 2596, 2662
BspLI	GGNNCC	2 cut(s)	1098, 1413
BspMI	ACCTGC	3 cut(s)	413, 1346, 2406
BspPI	GGATC	4 cut(s)	284, 370, 840, 2036
BspTI	CTTAAG	2 cut(s)	2015, 2576
BsrDI	GCAATG	1 cut(s)	1274
BsrFI	RCCGGY	1 cut(s)	668
BsrI	ACTGG	5 cut(s)	104, 278, 714, 1420, 1701
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	1 cut(s)	597
BssNAI	GTATAC	1 cut(s)	801
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	597
Bst1107I	GTATAC	1 cut(s)	801
Bst2UI	CCWGG	2 cut(s)	1265, 2333
Bst6I	CTCTTC	5 cut(s)	227, 325, 428, 1503, 1887
BstACI	GRCGYC	1 cut(s)	417
BstAFI	CTTAAG	2 cut(s)	2015, 2576
BstBAI	YACGTR	2 cut(s)	1113, 1323
BstC8I	GCNNGC	5 cut(s)	666, 1281, 1731, 2035, 2639
BstDEI	CTNAG	7 cut(s)	99, 126, 476, 633, 1284, 2604, 2649
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	7 cut(s)	138, 736, 883, 1608, 1690, 2425, 2644
BstH2I	RGCGCY	2 cut(s)	67, 2275
BstHHI	GCGC	4 cut(s)	66, 2022, 2088, 2274
BstMAI	GTCTC	3 cut(s)	217, 1459, 2107
BstMCI	CGRYCG	1 cut(s)	680
BstMWI	GCNNNNNNNGC	2 cut(s)	1157, 1280
BstNI	CCWGG	2 cut(s)	1265, 2333
BstNSI	RCATGY	3 cut(s)	1635, 1733, 2026
BstSCI	CCNGG	2 cut(s)	1263, 2331
BstSFI	CTRYAG	2 cut(s)	1429, 2509
BstSLI	GKGCMC	1 cut(s)	2221
BstSNI	TACGTA	1 cut(s)	1323
BstV1I	GCAGC	5 cut(s)	39, 42, 1147, 1887, 2024
BstV2I	GAAGAC	3 cut(s)	2099, 2165, 2436
BstX2I	RGATCY	2 cut(s)	375, 2185
BstYI	RGATCY	2 cut(s)	375, 2185
BstZ17I	GTATAC	1 cut(s)	801
BstZI	CGGCCG	1 cut(s)	677
Bsu36I	CCTNAGG	1 cut(s)	476
BsuI	GTATCC	2 cut(s)	676, 2398
BsuRI	GGCC	7 cut(s)	38, 668, 679, 1344, 1722, 1788, 2126
BtgI	CCRYGG	1 cut(s)	597
BtgZI	GCGATG	1 cut(s)	1283
BtrI	CACGTC	1 cut(s)	699
BtsCI	GGATG	7 cut(s)	138, 736, 883, 1608, 1690, 2425, 2644
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	5 cut(s)	78, 745, 1345, 1408, 1427
BveI	ACCTGC	3 cut(s)	413, 1346, 2406
Cac8I	GCNNGC	5 cut(s)	666, 1281, 1731, 2035, 2639
CfoI	GCGC	4 cut(s)	66, 2022, 2088, 2274
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	3 cut(s)	36, 1425, 1720
CseI	GACGC	2 cut(s)	425, 1735
Csp6I	GTAC	3 cut(s)	1114, 1219, 1716
CviQI	GTAC	3 cut(s)	1114, 1219, 1716
DdeI	CTNAG	7 cut(s)	99, 126, 476, 633, 1284, 2604, 2649
DraI	TTTAAA	1 cut(s)	534
DraIII	CACNNNGTG	1 cut(s)	1313
EaeI	YGGCCR	3 cut(s)	677, 1342, 1786
EagI	CGGCCG	1 cut(s)	677
Eam1104I	CTCTTC	5 cut(s)	227, 325, 428, 1503, 1887
EarI	CTCTTC	5 cut(s)	227, 325, 428, 1503, 1887
EciI	GGCGGA	2 cut(s)	845, 2332
EclXI	CGGCCG	1 cut(s)	677
Eco105I	TACGTA	1 cut(s)	1323
Eco130I	CCWWGG	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	1425
Eco47III	AGCGCT	1 cut(s)	65
Eco52I	CGGCCG	1 cut(s)	677
Eco57I	CTGAAG	2 cut(s)	1319, 1484
Eco81I	CCTNAGG	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	1263, 2331
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	2 cut(s)	1123, 1870
ErhI	CCWWGG	1 cut(s)	597
FalI	AAGNNNNNCTT	4 cut(s)	53, 85, 446, 478
FaqI	GGGAC	2 cut(s)	1793, 2001
FauNDI	CATATG	4 cut(s)	1764, 1975, 2236, 2304
FbaI	TGATCA	3 cut(s)	390, 1755, 2070
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	8 cut(s)	28, 31, 677, 767, 1161, 1876, 2038, 2391
FokI	GGATG	7 cut(s)	125, 743, 890, 1615, 1697, 2432, 2631
Fsp4HI	GCNGC	8 cut(s)	28, 31, 677, 767, 1161, 1876, 2038, 2391
FspBI	CTAG	5 cut(s)	1049, 1059, 1311, 1469, 1994
GlaI	GCGC	4 cut(s)	65, 2021, 2087, 2273
GluI	GCNGC	8 cut(s)	28, 31, 677, 767, 1161, 1876, 2038, 2391
GsaI	CCCAGC	1 cut(s)	2331
HaeII	RGCGCY	2 cut(s)	67, 2275
HaeIII	GGCC	7 cut(s)	38, 668, 679, 1344, 1722, 1788, 2126
HapII	CCGG	3 cut(s)	669, 680, 1835
HgaI	GACGC	2 cut(s)	425, 1735
HhaI	GCGC	4 cut(s)	66, 2022, 2088, 2274
Hin1I	GRCGYC	1 cut(s)	417
Hin6I	GCGC	4 cut(s)	64, 2020, 2086, 2272
HinP1I	GCGC	4 cut(s)	64, 2020, 2086, 2272
HincII	GTYRAC	2 cut(s)	992, 1950
HindII	GTYRAC	2 cut(s)	992, 1950
HindIII	AAGCTT	3 cut(s)	2131, 2243, 2639
HinfI	GANTC	5 cut(s)	1187, 1493, 1943, 1997, 2441
HpaII	CCGG	3 cut(s)	669, 680, 1835
HphI	GGTGA	5 cut(s)	289, 463, 1064, 1299, 1370
Hpy188I	TCNGA	7 cut(s)	100, 783, 837, 949, 1299, 2605, 2652
Hpy188III	TCNNGA	4 cut(s)	1415, 1502, 2068, 2488
Hpy99I	CGWCG	2 cut(s)	116, 368
HpyCH4IV	ACGT	7 cut(s)	698, 902, 1112, 1217, 1322, 1839, 1981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1157, 1280
HpyF3I	CTNAG	7 cut(s)	99, 126, 476, 633, 1284, 2604, 2649
HpySE526I	ACGT	7 cut(s)	698, 902, 1112, 1217, 1322, 1839, 1981
Hsp92I	GRCGYC	1 cut(s)	417
HspAI	GCGC	4 cut(s)	64, 2020, 2086, 2272
Ksp22I	TGATCA	3 cut(s)	390, 1755, 2070
LmnI	GCTCC	3 cut(s)	1148, 2523, 2623
Lsp1109I	GCAGC	5 cut(s)	39, 42, 1147, 1887, 2024
LweI	GCATC	6 cut(s)	1278, 1570, 1593, 1675, 2020, 2588
MaeI	CTAG	5 cut(s)	1049, 1059, 1311, 1469, 1994
MaeII	ACGT	7 cut(s)	698, 902, 1112, 1217, 1322, 1839, 1981
MaeIII	GTNAC	4 cut(s)	1108, 1528, 1553, 1619
MfeI	CAATTG	2 cut(s)	154, 1164
MflI	RGATCY	2 cut(s)	375, 2185
MhlI	GDGCHC	2 cut(s)	1020, 2221
MlsI	TGGCCA	1 cut(s)	1344
MluNI	TGGCCA	1 cut(s)	1344
MlyI	GAGTC	1 cut(s)	2450
MmeI	TCCRAC	2 cut(s)	761, 1062
Mox20I	TGGCCA	1 cut(s)	1344
Mph1103I	ATGCAT	2 cut(s)	1123, 1870
MscI	TGGCCA	1 cut(s)	1344
MslI	CAYNNNNRTG	2 cut(s)	386, 2214
Msp20I	TGGCCA	1 cut(s)	1344
MspCI	CTTAAG	2 cut(s)	2015, 2576
MspI	CCGG	3 cut(s)	669, 680, 1835
MspR9I	CCNGG	2 cut(s)	1265, 2333
MunI	CAATTG	2 cut(s)	154, 1164
Mva1269I	GAATGC	1 cut(s)	1003
MvaI	CCWGG	2 cut(s)	1265, 2333
MwoI	GCNNNNNNNGC	2 cut(s)	1157, 1280
NcoI	CCATGG	1 cut(s)	597
NdeI	CATATG	4 cut(s)	1764, 1975, 2236, 2304
NlaIV	GGNNCC	2 cut(s)	1098, 1413
NmuCI	GTSAC	2 cut(s)	1108, 1528
NsiI	ATGCAT	2 cut(s)	1123, 1870
NspI	RCATGY	3 cut(s)	1635, 1733, 2026
PaeI	GCATGC	1 cut(s)	1733
PaqCI	CACCTGC	2 cut(s)	413, 1346
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	1 cut(s)	1003
PfeI	GAWTC	4 cut(s)	1187, 1493, 1943, 1997
PflMI	CCANNNNNTGG	1 cut(s)	1270
PkrI	GCNGC	8 cut(s)	29, 32, 678, 768, 1162, 1877, 2039, 2392
PleI	GAGTC	1 cut(s)	2449
PpsI	GAGTC	1 cut(s)	2449
Ppu21I	YACGTR	2 cut(s)	1113, 1323
PshBI	ATTAAT	4 cut(s)	1229, 1334, 1575, 2355
PsiI	TTATAA	1 cut(s)	2249
Psp6I	CCWGG	2 cut(s)	1263, 2331
PspFI	CCCAGC	1 cut(s)	2327
PspGI	CCWGG	2 cut(s)	1263, 2331
PspN4I	GGNNCC	2 cut(s)	1098, 1413
PspPI	GGNCC	3 cut(s)	36, 1425, 1720
PsuI	RGATCY	2 cut(s)	375, 2185
RsaI	GTAC	3 cut(s)	1115, 1220, 1717
RsaNI	GTAC	3 cut(s)	1114, 1219, 1716
RseI	CAYNNNNRTG	2 cut(s)	386, 2214
SatI	GCNGC	8 cut(s)	28, 31, 677, 767, 1161, 1876, 2038, 2391
Sau96I	GGNCC	3 cut(s)	36, 1425, 1720
SchI	GAGTC	1 cut(s)	2450
ScrFI	CCNGG	2 cut(s)	1265, 2333
SduI	GDGCHC	2 cut(s)	1020, 2221
SfaNI	GCATC	6 cut(s)	1278, 1570, 1593, 1675, 2020, 2588
SfcI	CTRYAG	2 cut(s)	1429, 2509
SinI	GGWCC	1 cut(s)	1425
SmiMI	CAYNNNNRTG	2 cut(s)	386, 2214
SmlI	CTYRAG	3 cut(s)	2015, 2128, 2576
SmoI	CTYRAG	3 cut(s)	2015, 2128, 2576
SnaBI	TACGTA	1 cut(s)	1323
SphI	GCATGC	1 cut(s)	1733
SspI	AATATT	1 cut(s)	1692
SspMI	CTAG	5 cut(s)	1049, 1059, 1311, 1469, 1994
StyD4I	CCNGG	2 cut(s)	1263, 2331
StyI	CCWWGG	1 cut(s)	597
TaiI	ACGT	7 cut(s)	701, 905, 1115, 1220, 1325, 1842, 1984
TaqI	TCGA	5 cut(s)	111, 1213, 1293, 2090, 2487
TauI	GCSGC	3 cut(s)	679, 769, 2393
TfiI	GAWTC	4 cut(s)	1187, 1493, 1943, 1997
TscAI	CASTG	5 cut(s)	85, 745, 1352, 1408, 1427
TseFI	GTSAC	2 cut(s)	1108, 1528
TseI	GCWGC	5 cut(s)	27, 30, 1160, 1875, 2037
Tsp45I	GTSAC	2 cut(s)	1108, 1528
TspGWI	ACGGA	2 cut(s)	352, 2510
TspRI	CASTG	5 cut(s)	85, 745, 1352, 1408, 1427
Van91I	CCANNNNNTGG	1 cut(s)	1270
Vha464I	CTTAAG	2 cut(s)	2015, 2576
VneI	GTGCAC	1 cut(s)	2217
VpaK11BI	GGWCC	1 cut(s)	1425
VspI	ATTAAT	4 cut(s)	1229, 1334, 1575, 2355
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	3 cut(s)	1635, 1733, 2026
XmiI	GTMKAC	1 cut(s)	800
XspI	CTAG	5 cut(s)	1049, 1059, 1311, 1469, 1994
Zsp2I	ATGCAT	2 cut(s)	1123, 1870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.