Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

8530865 .. 8533779

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGACTATTCTTGTTGAACATTTTGTTCCTGATTCAAGAGTGGATGAAAAGAAAGTGATAGAGGAGAGGGATAATGAATTGGTGTTGGATGGAGGTTTTGTGGTTCCAAAATCAAAGGAAACTGATGCATTCGATGCTCCTGATATGAATTTCTTGGGCCATTCCTTCAGGGATTATGAGAATGGTGAAAGCGAGAGACAACAAGGTGTTGAGGAATTTTACAGGATGCAACACATTCACCAGACCTATGACTTTGTGAAGAAGATGAGGAAAGAGTATGGAAAACTTAACAAGATGGAAATGAGTATATGGGAATGTTGTGAGTTATTGAACAATGTTGTTGATGAAAGCGATCCGGATCTTGATGAGCCTCAAATTCAACACCTTCTCCAAACCGCTGAAGCCATTCGAAGGGACTATCCCGACGAAGATTGGCTCCATCTCACTGCCCTAATCCATGATCTTGGCAAGGTTCTCCTTCTGCCAGAATTCGGTGGTCTTCCCCAGTGGGCTGTCGTTGGCGATACATTTCCAGTTGGATGTACCTTCGACTCAGCCAATATTCACCACAAGTATTTCAAAGGAAACCATGATATCAACAACCCAAAGTACAACACAAAAAATGGAGTTTACACTGAAGGATGTGGTTTAGACAATGTTCTCATGTCATGGGGTCATGACGACTACATGTATTTGGTGGCTAAGAAGAATGGCACGACCCTTCCTCACGCTGGTCTCTTCATTATTCGATATCATTCCTTTTATCCATTGCACAAGGCAGGAGCCTACACACACTTGATGAACGATGAGGACAGAGATGATCTCAAGTGGCTCCATGTCTTCAATAAATATGACCTATACAGTAAGAGCAAAGTTCTGGTAGATGTCGAACAAGTGAAGCCTTACTACATTTCACTCATCAACAAGTATTTTCCGGCGAAACTAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

317

Amino Acids

37.05

Weight (kDa)

5.34

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	68 - 317	6.2e-128	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	2 cut(s)	347, 366
AcsI	RAATTY	4 cut(s)	148, 215, 375, 488
AcuI	CTGAAG	3 cut(s)	151, 420, 657
AfaI	GTAC	2 cut(s)	544, 611
AfiI	CCNNNNNNNGG	3 cut(s)	411, 491, 731
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	6 cut(s)	17, 36, 331, 380, 580, 844
Alw26I	GTCTC	2 cut(s)	190, 740
AlwI	GGATC	2 cut(s)	347, 366
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	4 cut(s)	148, 215, 375, 488
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	197, 230, 557
AsuII	TTCGAA	1 cut(s)	409
BarI	GAAGNNNNNNTAC	2 cut(s)	890, 922
BbsI	GAAGAC	2 cut(s)	491, 832
BccI	CCATC	3 cut(s)	83, 289, 447
BcoDI	GTCTC	2 cut(s)	190, 740
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	4 cut(s)	105, 437, 784, 833
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	3 cut(s)	115, 124, 216
BmuI	ACTGGG	1 cut(s)	499
BpiI	GAAGAC	2 cut(s)	491, 832
BplI	GAGNNNNNCTC	2 cut(s)	807, 839
Bpu14I	TTCGAA	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	740
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 491, 731
Bse1I	ACTGG	2 cut(s)	505, 533
Bse3DI	GCAATG	1 cut(s)	767
Bse8I	GATNNNNATC	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	355
BseGI	GGATG	5 cut(s)	49, 94, 231, 545, 647
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	3 cut(s)	411, 491, 731
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	2 cut(s)	505, 533
BseRI	GAGGAG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	356, 935
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	3 cut(s)	411, 491, 731
BsmAI	GTCTC	2 cut(s)	190, 740
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	740
Bsp119I	TTCGAA	1 cut(s)	409
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	4 cut(s)	352, 358, 460, 820
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	566
BspEI	TCCGGA	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	4 cut(s)	105, 437, 784, 833
BspPI	GGATC	2 cut(s)	347, 366
BspT104I	TTCGAA	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	767
BsrI	ACTGG	2 cut(s)	505, 533
BssMI	GATC	4 cut(s)	352, 358, 460, 820
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	1 cut(s)	743
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	553, 702
BstF5I	GGATG	5 cut(s)	49, 94, 231, 545, 647
BstKTI	GATC	4 cut(s)	355, 361, 463, 823
BstMAI	GTCTC	2 cut(s)	190, 740
BstMBI	GATC	4 cut(s)	352, 358, 460, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	691
BstV2I	GAAGAC	2 cut(s)	491, 832
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	5 cut(s)	49, 94, 231, 545, 647
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	444, 512, 633
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	543, 610
CviAII	CATG	7 cut(s)	458, 590, 664, 669, 677, 688, 836
CviQI	GTAC	2 cut(s)	543, 610
DdeI	CTNAG	2 cut(s)	553, 702
DpnI	GATC	4 cut(s)	354, 360, 462, 822
DpnII	GATC	4 cut(s)	352, 358, 460, 820
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	740
Eco32I	GATATC	2 cut(s)	595, 752
Eco57I	CTGAAG	3 cut(s)	151, 420, 657
EcoRI	GAATTC	1 cut(s)	488
EcoRV	GATATC	2 cut(s)	595, 752
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	7 cut(s)	461, 593, 667, 672, 680, 691, 839
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	7 cut(s)	457, 589, 663, 668, 676, 687, 835
FokI	GGATG	5 cut(s)	56, 101, 238, 552, 654
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	2 cut(s)	356, 935
Hin1II	CATG	7 cut(s)	461, 593, 667, 672, 680, 691, 839
HinfI	GANTC	2 cut(s)	32, 551
HpaII	CCGG	2 cut(s)	356, 935
HphI	GGTGA	3 cut(s)	197, 230, 557
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188III	TCNNGA	7 cut(s)	29, 36, 140, 356, 362, 422, 677
Hpy8I	GTNNAC	1 cut(s)	631
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	7 cut(s)	175, 395, 405, 488, 556, 632, 731
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4V	TGCA	3 cut(s)	128, 229, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	553, 702
Hsp92II	CATG	7 cut(s)	461, 593, 667, 672, 680, 691, 839
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	352, 358, 460, 820
LmnI	GCTCC	4 cut(s)	142, 441, 782, 837
LweI	GCATC	3 cut(s)	115, 124, 216
MalI	GATC	4 cut(s)	354, 360, 462, 822
MboI	GATC	4 cut(s)	352, 358, 460, 820
MboII	GAAGA	7 cut(s)	271, 274, 440, 491, 718, 730, 832
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	5 cut(s)	77, 148, 215, 375, 488
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	2 cut(s)	66, 517
MnlI	CCTC	8 cut(s)	55, 60, 86, 205, 261, 381, 735, 802
Mph1103I	ATGCAT	1 cut(s)	130
MroI	TCCGGA	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	2 cut(s)	356, 935
Mva1269I	GAATGC	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	4 cut(s)	352, 358, 460, 820
NlaIII	CATG	7 cut(s)	461, 593, 667, 672, 680, 691, 839
NlaIV	GGNNCC	4 cut(s)	105, 437, 784, 833
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	409
PagI	TCATGA	1 cut(s)	676
PciI	ACATGT	1 cut(s)	687
PctI	GAATGC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PscI	ACATGT	1 cut(s)	687
PspN4I	GGNNCC	4 cut(s)	105, 437, 784, 833
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	544, 611
RsaNI	GTAC	2 cut(s)	543, 610
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	4 cut(s)	352, 358, 460, 820
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	545
SetI	ASST	7 cut(s)	97, 208, 248, 387, 474, 548, 858
SfaNI	GCATC	3 cut(s)	115, 124, 216
SfuI	TTCGAA	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	5 cut(s)	77, 148, 215, 375, 488
SsiI	CCGC	1 cut(s)	396
SspI	AATATT	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	863
TaqI	TCGA	5 cut(s)	132, 409, 549, 748, 888
TasI	AATT	5 cut(s)	77, 148, 215, 375, 488
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	3 cut(s)	451, 512, 640
TspDTI	ATGAA	6 cut(s)	60, 90, 161, 360, 730, 815
TspRI	CASTG	3 cut(s)	451, 512, 640
XapI	RAATTY	4 cut(s)	148, 215, 375, 488
XceI	RCATGY	1 cut(s)	691
XmnI	GAANNNNTTC	1 cut(s)	405
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.