Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

22927230 .. 22929717

Gene Structure 2488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAATATCTCCGTCGAAAACCCTGTTTTTGTACATGAGGACTCGACAACGCAGAAGACCGGAGAGTTACGATTGGACAGCGACATACCAATGTCGAAGATATCATCCGATGATGAAGTGTTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACACGGATACAAACAGCGAGAGGCAAAAGAGCGTCGAACATTTCTATGCAACACAACACACTAACCAAACTTTAGACTTTGTACAGAAAATGAGAAGTGAGTATGGAAAATTGGACAAGATGGTGATGAACATTTGGGAATGTTGTGAACTTTCAAAAGAAGTGGTGGACGAGAGTGATCCCGACCTCGACGAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAAGATTATCCTAACGAAGATTGGCTTCATCTCACTGCGCTTATCCATGATCTTGGGAAGGTTCTTACCCTACCACAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTTCCTGTTGGGTGTGCATTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACCCTGATTTTAACAACCCTAAGTACAATACCAAAGCTGGAATTTATTCTGAAGGCTGTGGACTTGAAAATGTTCTTATGTCATGGGGACATGATGACTACATGTATCTGGTGGCCAAGGAGAATGGAAGCACCTTACCATCCCCGGGACTATTCATCATCCGATACCATTCCTTTTATCCATTGCACAAGGCTGGAGCTTACACTCACCTTATGAACGAGGAAGACAAGGAGAATCTCAAATGGCTTCATGTTTTTAACAAGTATGACTTATACAGCAAGAGCAAAGTACACGTCAATGTCGAGAAGGTTAAGCCGTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCTGAGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

314

Amino Acids

36.54

Weight (kDa)

5.22

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	65 - 314	1.3e-127	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	482
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	2 cut(s)	366, 618
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	6 cut(s)	33, 249, 555, 602, 867, 896
AfiI	CCNNNNNNNGG	2 cut(s)	482, 722
AflIII	ACRYGT	3 cut(s)	678, 868, 900
AgsI	TTSAA	4 cut(s)	321, 371, 383, 644
AjiI	CACGTC	1 cut(s)	871
AluBI	AGCT	2 cut(s)	614, 776
AluI	AGCT	2 cut(s)	614, 776
Alw26I	GTCTC	2 cut(s)	156, 909
AlwI	GGATC	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	721
AoxI	GGCC	1 cut(s)	690
ApoI	RAATTY	2 cut(s)	366, 618
ArsI	GACNNNNNNTTYG	2 cut(s)	855, 887
Asp700I	GAANNNNTTC	3 cut(s)	622, 648, 920
AspLEI	GCGC	1 cut(s)	442
AsuC2I	CCSGG	3 cut(s)	722, 723, 926
AsuHPI	GGTGA	3 cut(s)	301, 524, 776
AvaI	CYCGRG	1 cut(s)	721
BalI	TGGCCA	1 cut(s)	692
BbsI	GAAGAC	2 cut(s)	62, 807
BccI	CCATC	2 cut(s)	280, 724
BceAI	ACGGC	1 cut(s)	877
BciVI	GTATCC	1 cut(s)	166
BcnI	CCSGG	3 cut(s)	722, 723, 926
BcoDI	GTCTC	2 cut(s)	156, 909
BfuI	GTATCC	1 cut(s)	166
Bme1390I	CCNGG	3 cut(s)	722, 723, 926
BmeT110I	CYCGRG	1 cut(s)	721
BmgBI	CACGTC	1 cut(s)	871
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	3 cut(s)	722, 723, 926
BpiI	GAAGAC	2 cut(s)	62, 807
BpmI	CTGGAG	1 cut(s)	792
BpuMI	CCSGG	3 cut(s)	722, 723, 926
BsaJI	CCNNGG	3 cut(s)	693, 720, 721
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 722
Bse3DI	GCAATG	1 cut(s)	758
BseDI	CCNNGG	3 cut(s)	693, 720, 721
BseGI	GGATG	3 cut(s)	104, 716, 735
BseLI	CCNNNNNNNGG	2 cut(s)	482, 722
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	2 cut(s)	123, 926
BshFI	GGCC	1 cut(s)	692
BsiHKCI	CYCGRG	1 cut(s)	721
BsiSI	CCGG	3 cut(s)	60, 722, 926
BslFI	GGGAC	2 cut(s)	678, 738
BslI	CCNNNNNNNGG	2 cut(s)	482, 722
BsmAI	GTCTC	2 cut(s)	156, 909
BsmFI	GGGAC	2 cut(s)	678, 738
BsnI	GGCC	1 cut(s)	692
BsoBI	CYCGRG	1 cut(s)	721
Bsp1407I	TGTACA	2 cut(s)	31, 247
Bsp143I	GATC	2 cut(s)	343, 451
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	2 cut(s)	124, 927
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	758
BsrGI	TGTACA	2 cut(s)	31, 247
BssECI	CCNNGG	3 cut(s)	693, 720, 721
BssMI	GATC	2 cut(s)	343, 451
BssT1I	CCWWGG	1 cut(s)	693
Bst4CI	ACNGT	1 cut(s)	480
BstAUI	TGTACA	2 cut(s)	31, 247
BstDEI	CTNAG	3 cut(s)	132, 597, 935
BstF5I	GGATG	3 cut(s)	104, 716, 735
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	2 cut(s)	346, 454
BstMAI	GTCTC	2 cut(s)	156, 909
BstMBI	GATC	2 cut(s)	343, 451
BstNSI	RCATGY	2 cut(s)	682, 904
BstSCI	CCNGG	3 cut(s)	720, 721, 924
BstV2I	GAAGAC	2 cut(s)	62, 807
BstXI	CCANNNNNNTGG	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	692
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	3 cut(s)	104, 716, 735
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
CfoI	GCGC	1 cut(s)	442
Cfr9I	CCCGGG	1 cut(s)	721
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	6 cut(s)	32, 248, 554, 601, 866, 895
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	7 cut(s)	35, 449, 660, 668, 679, 827, 901
CviQI	GTAC	6 cut(s)	32, 248, 554, 601, 866, 895
DdeI	CTNAG	3 cut(s)	132, 597, 935
DpnI	GATC	2 cut(s)	345, 453
DpnII	GATC	2 cut(s)	343, 451
EaeI	YGGCCR	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	721
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	7 cut(s)	38, 452, 663, 671, 682, 830, 904
FalI	AAGNNNNNCTT	4 cut(s)	411, 443, 830, 862
FaqI	GGGAC	2 cut(s)	678, 738
FatI	CATG	7 cut(s)	34, 448, 659, 667, 678, 826, 900
FokI	GGATG	3 cut(s)	91, 703, 722
GlaI	GCGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	1 cut(s)	692
HapII	CCGG	3 cut(s)	60, 722, 926
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	7 cut(s)	38, 452, 663, 671, 682, 830, 904
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HinfI	GANTC	3 cut(s)	41, 545, 811
HpaII	CCGG	3 cut(s)	60, 722, 926
HphI	GGTGA	3 cut(s)	301, 524, 776
Hpy166II	GTNNAC	5 cut(s)	314, 334, 556, 638, 868
Hpy188I	TCNGA	5 cut(s)	109, 161, 628, 740, 936
Hpy188III	TCNNGA	4 cut(s)	131, 347, 880, 913
Hpy8I	GTNNAC	5 cut(s)	314, 334, 556, 638, 868
Hpy99I	CGWCG	3 cut(s)	17, 203, 359
HpyAV	CCTTC	3 cut(s)	454, 623, 877
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	2 cut(s)	552, 870
HpyCH4V	TGCA	3 cut(s)	215, 536, 763
HpyF3I	CTNAG	3 cut(s)	132, 597, 935
HpySE526I	ACGT	2 cut(s)	552, 870
Hsp92II	CATG	7 cut(s)	38, 452, 663, 671, 682, 830, 904
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	2 cut(s)	343, 451
LmnI	GCTCC	2 cut(s)	133, 773
MaeII	ACGT	2 cut(s)	552, 870
MaeIII	GTNAC	2 cut(s)	66, 512
MalI	GATC	2 cut(s)	345, 453
MboI	GATC	2 cut(s)	343, 451
MboII	GAAGA	4 cut(s)	67, 109, 431, 812
MlsI	TGGCCA	1 cut(s)	692
MluCI	AATT	4 cut(s)	155, 275, 366, 618
MluNI	TGGCCA	1 cut(s)	692
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	7 cut(s)	31, 180, 362, 479, 504, 790, 930
Mox20I	TGGCCA	1 cut(s)	692
MroXI	GAANNNNTTC	3 cut(s)	622, 648, 920
MscI	TGGCCA	1 cut(s)	692
MseI	TTAA	3 cut(s)	588, 834, 888
MslI	CAYNNNNRTG	3 cut(s)	89, 210, 873
Msp20I	TGGCCA	1 cut(s)	692
MspI	CCGG	3 cut(s)	60, 722, 926
MspR9I	CCNGG	3 cut(s)	722, 723, 926
NciI	CCSGG	3 cut(s)	722, 723, 926
NdeII	GATC	2 cut(s)	343, 451
NlaIII	CATG	7 cut(s)	38, 452, 663, 671, 682, 830, 904
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	512
NspI	RCATGY	2 cut(s)	682, 904
PciI	ACATGT	2 cut(s)	678, 900
PcsI	WCGNNNNNNNCGW	1 cut(s)	876
PdmI	GAANNNNTTC	3 cut(s)	622, 648, 920
PfeI	GAWTC	2 cut(s)	545, 811
PflMI	CCANNNNNTGG	1 cut(s)	482
PfoI	TCCNGGA	1 cut(s)	924
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	2 cut(s)	678, 900
PspN4I	GGNNCC	1 cut(s)	129
RsaI	GTAC	6 cut(s)	33, 249, 555, 602, 867, 896
RsaNI	GTAC	6 cut(s)	32, 248, 554, 601, 866, 895
RseI	CAYNNNNRTG	3 cut(s)	89, 210, 873
SaqAI	TTAA	3 cut(s)	588, 834, 888
Sau3AI	GATC	2 cut(s)	343, 451
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	722, 723, 926
SmaI	CCCGGG	1 cut(s)	723
SmiMI	CAYNNNNRTG	3 cut(s)	89, 210, 873
Sse9I	AATT	4 cut(s)	155, 275, 366, 618
SsiI	CCGC	1 cut(s)	389
SspI	AATATT	1 cut(s)	920
StyD4I	CCNGG	3 cut(s)	720, 721, 924
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	2 cut(s)	555, 873
TaqI	TCGA	6 cut(s)	15, 44, 95, 201, 354, 879
TasI	AATT	4 cut(s)	155, 275, 366, 618
TatI	WGTACW	4 cut(s)	31, 247, 600, 865
TfiI	GAWTC	2 cut(s)	545, 811
Tru1I	TTAA	3 cut(s)	588, 834, 888
Tru9I	TTAA	3 cut(s)	588, 834, 888
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	9 cut(s)	17, 129, 152, 308, 419, 558, 721, 806, 815
TspGWI	ACGGA	2 cut(s)	185, 389
TspMI	CCCGGG	1 cut(s)	721
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	482
XapI	RAATTY	2 cut(s)	366, 618
XceI	RCATGY	2 cut(s)	682, 904
XmaI	CCCGGG	1 cut(s)	721
XmnI	GAANNNNTTC	3 cut(s)	622, 648, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.