Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Reverse (-)

23038314 .. 23040204

Gene Structure 1891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG232900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGCATATGGGAATGCTGTGAGCTCCTGAATGAGGTTGTGGATGAGAGTGACCCGGATTTGGATGAACCCCAAATTCAGCATTTGTTGCAAACAGCTGAGGCAATTAGAAAAGACTATCCGAATGAAGATTGGCTGCACCTTACCGCTCTCATTCATGATCTCGGGAAAGTGCTTCTTCTTCCTAAATTTGGAGGACTTCCTCAATGGGCTGTTGTTGGAGACACACATCCTCTTGGGTGCGCTTTTGATGAATCCATCGTTCACCACAAGTACTTCAAGGACAATCCGGATTCCAAAAATCCCGCGTACAACAACAAGAATGGAATTTACAAAGAAGGGTGTGGACTAGAAAATGTGATGATCTCATGGGGTCATGATGACTACATGTACATGGTTGCCAAGGAAAACGGGACAACTTTGCCGGAGGCTGGATTGTTTGTTATCCGGTATCACTCATTTTATCCTCTACACAAGGCAGGGGCATATACACACCTAATGAACGAGGAAGACAGAAAGAATATGAAGTGGCTTCATATTTTTAACAAATATGACCTCTACAGCAAGAGCAAAGTTCAAGTTGATATCGACAAGGTCAAGCCTTACTACTTATCCCTTATTAACAAGTACTTCCCAGCGAAGCTAAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

217

Amino Acids

25.25

Weight (kDa)

5.73

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	1 - 217	4.9e-113	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	149
AccII	CGCG	1 cut(s)	308
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	2 cut(s)	147, 306
AcsI	RAATTY	3 cut(s)	75, 188, 327
AfaI	GTAC	4 cut(s)	275, 311, 392, 629
AfiI	CCNNNNNNNGG	4 cut(s)	34, 61, 191, 431
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	280, 578
AluBI	AGCT	3 cut(s)	25, 98, 643
AluI	AGCT	3 cut(s)	25, 98, 643
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	3 cut(s)	75, 188, 327
AspLEI	GCGC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	559
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmcAI	AGTACT	2 cut(s)	275, 629
Bme1390I	CCNGG	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	2 cut(s)	289, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 61, 191, 431
BseAI	TCCGGA	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	3 cut(s)	49, 70, 229
BseLI	CCNNNNNNNGG	4 cut(s)	34, 61, 191, 431
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	634
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	4 cut(s)	56, 290, 425, 448
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	4 cut(s)	34, 61, 191, 431
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	160, 363
BspACI	CCGC	2 cut(s)	147, 306
BspCNI	CTCAG	1 cut(s)	91
BspEI	TCCGGA	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	2 cut(s)	157, 376
BsrBI	CCGCTC	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	2 cut(s)	160, 363
BssT1I	CCWWGG	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstAUI	TGTACA	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	99
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	49, 70, 229
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	2 cut(s)	163, 366
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	160, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	559
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	49, 70, 229
CciI	TCATGA	2 cut(s)	157, 376
CfoI	GCGC	1 cut(s)	245
Csp6I	GTAC	4 cut(s)	274, 310, 391, 628
CviAII	CATG	5 cut(s)	158, 369, 377, 388, 394
CviJI	RGCY	8 cut(s)	25, 98, 136, 212, 431, 532, 601, 643
CviKI_1	RGCY	8 cut(s)	25, 98, 136, 212, 431, 532, 601, 643
CviQI	GTAC	4 cut(s)	274, 310, 391, 628
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	162, 365
DpnII	GATC	2 cut(s)	160, 363
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	5 cut(s)	161, 372, 380, 391, 397
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	5 cut(s)	157, 368, 376, 387, 393
FauI	CCCGC	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	3 cut(s)	56, 77, 216
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	137
GsaI	CCCAGC	1 cut(s)	638
HapII	CCGG	4 cut(s)	56, 290, 425, 448
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	5 cut(s)	161, 372, 380, 391, 397
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	2 cut(s)	254, 293
HpaII	CCGG	4 cut(s)	56, 290, 425, 448
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	265, 347
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	5 cut(s)	28, 158, 166, 290, 377
Hpy8I	GTNNAC	2 cut(s)	265, 347
HpyAV	CCTTC	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	91, 139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	161, 372, 380, 391, 397
HspAI	GCGC	1 cut(s)	243
Kpn2I	TCCGGA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	160, 363
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	8 cut(s)	41, 69, 303, 417, 438, 461, 465, 648
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	162, 365
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	2 cut(s)	160, 363
MboII	GAAGA	4 cut(s)	140, 170, 173, 521
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	75, 105, 188, 327
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	9 cut(s)	28, 94, 188, 213, 243, 421, 477, 499, 566
MroI	TCCGGA	1 cut(s)	289
MseI	TTAA	2 cut(s)	543, 621
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	4 cut(s)	56, 290, 425, 448
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	20
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	56
NdeI	CATATG	1 cut(s)	8
NdeII	GATC	2 cut(s)	160, 363
NlaIII	CATG	5 cut(s)	161, 372, 380, 391, 397
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	391
PagI	TCATGA	2 cut(s)	157, 376
PciI	ACATGT	1 cut(s)	387
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	254, 293
PflFI	GACNNNGTC	1 cut(s)	593
PkrI	GCNGC	1 cut(s)	138
PscI	ACATGT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	634
PsyI	GACNNNGTC	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	4 cut(s)	275, 311, 392, 629
RsaNI	GTAC	4 cut(s)	274, 310, 391, 628
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	543, 621
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	2 cut(s)	160, 363
ScaI	AGTACT	2 cut(s)	275, 629
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	8 cut(s)	27, 39, 100, 144, 498, 558, 597, 645
SfcI	CTRYAG	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	4 cut(s)	75, 105, 188, 327
SsiI	CCGC	2 cut(s)	147, 306
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	402
TaqI	TCGA	1 cut(s)	588
TasI	AATT	4 cut(s)	75, 105, 188, 327
TatI	WGTACW	3 cut(s)	273, 390, 627
TfiI	GAWTC	2 cut(s)	254, 293
Tru1I	TTAA	2 cut(s)	543, 621
Tru9I	TTAA	2 cut(s)	543, 621
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	7 cut(s)	81, 141, 146, 267, 515, 524, 539
Tth111I	GACNNNGTC	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	3 cut(s)	75, 188, 327
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	1 cut(s)	350
ZrmI	AGTACT	2 cut(s)	275, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.