Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001122

Physical Location & Seq

Genomic Coordinates Forward (+)

15473962 .. 15476253

Gene Structure 2292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGCCTTGAAACCCGTTTTGGAGTTCTGAATATCCTTTCTCCTTTAGTTTCCATCATTACCCTCCTAATTGAGAAAAAAGAAGACATGACTATCCTCGTTGAGAAGCCTGAGGTAGTGACCAAAGTGGAGGACCAGAATGAAACCAGTGATTTGGTGTTGGATGGTGGGTTTGTGGTTTCGAAAGACGTAGCCGGCAACGATGGGTGTGTGAAGCCCGAAGCTTTAGTGTCGAACAATGAGTTCATTACCCCTGAAATCAATGCATTTGGCCAGACATTCAGGGAATACAATGCAGAGAGTGAGAGGCAGAAAGGTGTGGAGGAATTCTACCGGTTGAACCACATTCACCAAACATATGATTTCGTGAAGAAAATGAGAGAGGAGTACAGAAAGCTCAATCGAGTTGAAATGAGCATATGGGAATGCTGTGAACTCCTCAATGAAGTTGTGGACGACACACTTGTTGCAAACAGAACAGCTGAAGCAATTCGAAAAGACTACCCTGATGAAGACTGGCTTCACTTGACTGCTCTTATTCATGATCTCGGAAAAGTGTTGCTGCTTCCGAGCTTTGGAGGCCTTCCTCAATGGGCTGTTGTTGGAGACACACATCCAGTTGGGTGCCCCTTTGATGGCTCCATTGTCCACCACAAGTACTTCAAGGACAACCCGGACTACAACAATGCGAAGTACAACAGCAGTAAGTATGGTATTTACGCACATGGGATTGGCCTGGAGAATGTGTTGATGTCTTGGGGTCATGACGACTACATGTACTTGGTGGCCAAGGAAAATGGCACAACTTTGCCTCAGGCCGGATTGTTCATTATCCGGTATCACTCCTTTTATCCTTTGCACAAATGCGGGGTGTATAAGCACCTCATGAACAAGGAGGATGAAGATAACTTGAAGTGGCTTAAAATCTTCAACAAGTATGATCTCTACAGCAAGAGCAAAGTTCGACTTGATGTTGAGAAAGTCAAGCCATATTACTTGTCCCTTATTGAGAAGTACTTCCCAGCAAAGCTGAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

346

Amino Acids

40.0

Weight (kDa)

5.6

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	105 - 346	1e-106	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19800 AT4G26260 AT4G26260 AT5G56640 AT5G56640
fragaria_vesca	FvH4_1g06630 FvH4_1g06630 FvH4_5g01690 FvH4_5g20650
malus_domestica	MD02G1069300.v1.1 MD12G1147200.v1.1 MD15G1201000.v1.1
prunus_persica	Prupe.2G089300_v2.0.a1 Prupe.5G054000_v2.0.a1 Prupe.5G054100_v2.0.a1 Prupe.7G216300_v2.0.a1
pyrus_communis	pycom15g17840
rosa_chinensis	RchiOBHm_Chr2g0092361 RchiOBHm_Chr7g0199031 RchiOBHm_Chr7g0206031 RchiOBHm_Chr7g0206141 RchiOBHm_Chr7g0206211
rosa_laevigata	RLG00000003333 RLG00000003336 RLG00000003821 RLG00000003822 RLG00000016303
rosa_multiflora	Rmu_sc0000076.1_g000016 Rmu_sc0003289.1_g000008 Rmu_sc0004084.1_g000023 Rmu_sc0004084.1_g000036 Rmu_sc0007328.1_g000002 Rmu_sc0010737.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149200 Rroxscaffold_3G00251770 Rroxscaffold_3G00251780 Rroxscaffold_3G00251820 Rroxscaffold_3G00257200
rosa_rugosa	Rorug02G0025300.1 Rorug07G0052200 Rorug07G0094600 Rorug07G0094700 Rorug07G0094800
rosa_samantha	Rh2AG071300 Rh7AG175300 Rh7AG226800 Rh7BG178700 Rh7BG223000 Rh7CG184500 Rh7CG240800 Rh7DG178300 Rh7DG232900
rosa_wichuraiana	Rw0G012930 Rw2G006110 Rw7G015380 Rw7G019500 Rw7G019530 Rw7G019580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	624
AciI	CCGC	1 cut(s)	867
AcoI	YGGCCR	2 cut(s)	271, 786
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	5 cut(s)	389, 659, 695, 779, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	575, 635, 818
AflIII	ACRYGT	1 cut(s)	774
AgeI	ACCGGT	1 cut(s)	333
AgsI	TTSAA	6 cut(s)	11, 340, 410, 664, 913, 931
AjnI	CCWGG	1 cut(s)	735
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	5 cut(s)	224, 397, 482, 573, 1030
AluI	AGCT	5 cut(s)	224, 397, 482, 573, 1030
Alw26I	GTCTC	1 cut(s)	600
AoxI	GGCC	6 cut(s)	4, 271, 580, 733, 786, 816
ApeKI	GCWGC	1 cut(s)	562
ApoI	RAATTY	1 cut(s)	326
AsiGI	ACCGGT	1 cut(s)	333
Asp700I	GAANNNNTTC	2 cut(s)	489, 1016
AspS9I	GGNCC	2 cut(s)	4, 133
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	341
AsuII	TTCGAA	2 cut(s)	182, 493
AvaII	GGWCC	1 cut(s)	133
AxyI	CCTNAGG	2 cut(s)	111, 813
BaeGI	GKGCMC	1 cut(s)	629
BalI	TGGCCA	2 cut(s)	273, 788
BanI	GGYRCC	1 cut(s)	624
BbsI	GAAGAC	2 cut(s)	90, 519
BbvI	GCAGC	1 cut(s)	549
BccI	CCATC	4 cut(s)	62, 158, 197, 629
BciT130I	CCWGG	1 cut(s)	737
BcnI	CCSGG	1 cut(s)	674
BcoDI	GTCTC	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	946
BisI	GCNGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	564
BmcAI	AGTACT	2 cut(s)	659, 1016
Bme1390I	CCNGG	2 cut(s)	674, 737
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	4, 133
BmiI	GGNNCC	2 cut(s)	626, 640
BmrFI	CCNGG	2 cut(s)	674, 737
BpiI	GAAGAC	2 cut(s)	90, 519
BpmI	CTGGAG	1 cut(s)	758
Bpu14I	TTCGAA	2 cut(s)	182, 493
BpuMI	CCSGG	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	789
BsaWI	WCCGGW	2 cut(s)	333, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bsc4I	CCNNNNNNNGG	3 cut(s)	575, 635, 818
Bse118I	RCCGGY	2 cut(s)	194, 333
Bse1I	ACTGG	3 cut(s)	147, 521, 617
Bse21I	CCTNAGG	2 cut(s)	111, 813
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	3 cut(s)	169, 613, 904
BseLI	CCNNNNNNNGG	3 cut(s)	575, 635, 818
BseMII	CTCAG	2 cut(s)	102, 827
BseNI	ACTGG	3 cut(s)	147, 521, 617
BseRI	GAGGAG	2 cut(s)	398, 428
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	549
BseYI	CCCAGC	1 cut(s)	1021
BshFI	GGCC	6 cut(s)	6, 273, 582, 735, 788, 818
BshNI	GGYRCC	1 cut(s)	624
BshTI	ACCGGT	1 cut(s)	333
BsiSI	CCGG	5 cut(s)	195, 334, 674, 819, 835
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	3 cut(s)	575, 635, 818
BsmAI	GTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	985
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	6 cut(s)	6, 273, 582, 735, 788, 818
Bsp119I	TTCGAA	2 cut(s)	182, 493
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	544, 940
BspACI	CCGC	1 cut(s)	867
BspANI	GGCC	6 cut(s)	6, 273, 582, 735, 788, 818
BspCNI	CTCAG	2 cut(s)	103, 826
BspHI	TCATGA	3 cut(s)	541, 763, 885
BspLI	GGNNCC	2 cut(s)	626, 640
BspT104I	TTCGAA	2 cut(s)	182, 493
BspT107I	GGYRCC	1 cut(s)	624
BsrFI	RCCGGY	2 cut(s)	194, 333
BsrI	ACTGG	3 cut(s)	147, 521, 617
BssAI	RCCGGY	2 cut(s)	194, 333
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	2 cut(s)	544, 940
BssT1I	CCWWGG	1 cut(s)	789
Bst2UI	CCWGG	1 cut(s)	737
BstBI	TTCGAA	2 cut(s)	182, 493
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	111, 813
BstF5I	GGATG	3 cut(s)	169, 613, 904
BstKTI	GATC	2 cut(s)	547, 943
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	2 cut(s)	544, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	2 cut(s)	672, 735
BstSFI	CTRYAG	1 cut(s)	946
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	549
BstV2I	GAAGAC	2 cut(s)	90, 519
BstXI	CCANNNNNNTGG	1 cut(s)	154
Bsu36I	CCTNAGG	2 cut(s)	111, 813
BsuRI	GGCC	6 cut(s)	6, 273, 582, 735, 788, 818
BtsCI	GGATG	3 cut(s)	169, 613, 904
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	196
CciI	TCATGA	3 cut(s)	541, 763, 885
Cfr10I	RCCGGY	2 cut(s)	194, 333
Cfr13I	GGNCC	2 cut(s)	4, 133
Csp6I	GTAC	5 cut(s)	388, 658, 694, 778, 1015
CspAI	ACCGGT	1 cut(s)	333
CviAII	CATG	6 cut(s)	88, 542, 725, 764, 775, 886
CviQI	GTAC	5 cut(s)	388, 658, 694, 778, 1015
DdeI	CTNAG	2 cut(s)	111, 813
DpnI	GATC	2 cut(s)	546, 942
DpnII	GATC	2 cut(s)	544, 940
EaeI	YGGCCR	2 cut(s)	271, 786
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	504
Eco81I	CCTNAGG	2 cut(s)	111, 813
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	735
EcoT14I	CCWWGG	1 cut(s)	789
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	6 cut(s)	91, 545, 728, 767, 778, 889
FalI	AAGNNNNNCTT	4 cut(s)	504, 536, 951, 983
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	6 cut(s)	87, 541, 724, 763, 774, 885
FauI	CCCGC	1 cut(s)	860
FauNDI	CATATG	2 cut(s)	358, 419
Fnu4HI	GCNGC	1 cut(s)	563
FokI	GGATG	3 cut(s)	176, 600, 911
Fsp4HI	GCNGC	1 cut(s)	563
GluI	GCNGC	1 cut(s)	563
GsaI	CCCAGC	1 cut(s)	1025
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	6 cut(s)	6, 273, 582, 735, 788, 818
HapII	CCGG	5 cut(s)	195, 334, 674, 819, 835
Hin1II	CATG	6 cut(s)	91, 545, 728, 767, 778, 889
HindIII	AAGCTT	1 cut(s)	222
HpaII	CCGG	5 cut(s)	195, 334, 674, 819, 835
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	434, 454, 649
Hpy188I	TCNGA	3 cut(s)	30, 551, 570
Hpy188III	TCNNGA	4 cut(s)	367, 542, 764, 886
Hpy8I	GTNNAC	3 cut(s)	434, 454, 649
HpyAV	CCTTC	1 cut(s)	593
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	266, 296, 470, 859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpyF3I	CTNAG	2 cut(s)	111, 813
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	6 cut(s)	91, 545, 728, 767, 778, 889
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	544, 940
LmnI	GCTCC	1 cut(s)	644
Lsp1109I	GCAGC	1 cut(s)	549
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	546, 942
MboI	GATC	2 cut(s)	544, 940
MboII	GAAGA	5 cut(s)	95, 382, 524, 914, 919
MhlI	GDGCHC	1 cut(s)	629
MlsI	TGGCCA	2 cut(s)	273, 788
MluCI	AATT	3 cut(s)	69, 326, 489
MluNI	TGGCCA	2 cut(s)	273, 788
MmeI	TCCRAC	2 cut(s)	141, 583
Mox20I	TGGCCA	2 cut(s)	273, 788
Mph1103I	ATGCAT	1 cut(s)	268
MroNI	GCCGGC	1 cut(s)	194
MroXI	GAANNNNTTC	2 cut(s)	489, 1016
MscI	TGGCCA	2 cut(s)	273, 788
MseI	TTAA	1 cut(s)	921
Msp20I	TGGCCA	2 cut(s)	273, 788
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	5 cut(s)	195, 334, 674, 819, 835
MspR9I	CCNGG	2 cut(s)	674, 737
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	737
MwoI	GCNNNNNNNGC	1 cut(s)	579
NaeI	GCCGGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	674
NdeI	CATATG	2 cut(s)	358, 419
NdeII	GATC	2 cut(s)	544, 940
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	6 cut(s)	91, 545, 728, 767, 778, 889
NlaIV	GGNNCC	2 cut(s)	626, 640
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	778
NspV	TTCGAA	2 cut(s)	182, 493
PagI	TCATGA	3 cut(s)	541, 763, 885
PceI	AGGCCT	1 cut(s)	582
PciI	ACATGT	1 cut(s)	774
PctI	GAATGC	1 cut(s)	431
PdiI	GCCGGC	1 cut(s)	196
PdmI	GAANNNNTTC	2 cut(s)	489, 1016
PinAI	ACCGGT	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	564
PscI	ACATGT	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	735
PspFI	CCCAGC	1 cut(s)	1021
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	2 cut(s)	626, 640
PspPI	GGNCC	2 cut(s)	4, 133
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	5 cut(s)	389, 659, 695, 779, 1016
RsaNI	GTAC	5 cut(s)	388, 658, 694, 778, 1015
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	1 cut(s)	563
Sau3AI	GATC	2 cut(s)	544, 940
Sau96I	GGNCC	2 cut(s)	4, 133
ScaI	AGTACT	2 cut(s)	659, 1016
ScrFI	CCNGG	2 cut(s)	674, 737
SduI	GDGCHC	1 cut(s)	629
SetI	ASST	9 cut(s)	117, 192, 226, 319, 399, 484, 575, 885, 1032
SfcI	CTRYAG	1 cut(s)	946
SfuI	TTCGAA	2 cut(s)	182, 493
SinI	GGWCC	1 cut(s)	133
Sse9I	AATT	3 cut(s)	69, 326, 489
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	1 cut(s)	867
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	672, 735
StyI	CCWWGG	1 cut(s)	789
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	182, 233, 403, 493, 964
TasI	AATT	3 cut(s)	69, 326, 489
TatI	WGTACW	5 cut(s)	387, 657, 693, 777, 1014
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	8 cut(s)	156, 235, 459, 525, 530, 817, 902, 915
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	778
XmnI	GAANNNNTTC	2 cut(s)	489, 1016
ZrmI	AGTACT	2 cut(s)	659, 1016
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.